BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2215 208998 208294 -235 !not a gene!
         (235 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71245 hypothetical protein PH0221 - Pyrococcus horikoshii ...   479  e-134

>pir||D71245 hypothetical protein PH0221 - Pyrococcus horikoshii
           >gi|3256608|dbj|BAA29291.1| (AP000001) 235aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 235
           
 Score =  479 bits (1220), Expect = e-134
 Identities = 224/235 (95%), Positives = 224/235 (95%)

Query: 1   MGSSLPTGGPWHARQAEVSXXXXXXXXXXXYAIHAGRHLTDKEFRYLKRVIVTPAVYRCF 60
           MGSSLPTGGPWHARQAEVS           YAIHAGRHLTDKEFRYLKRVIVTPAVYRCF
Sbjct: 1   MGSSLPTGGPWHARQAEVSPGPGRGQRGPRYAIHAGRHLTDKEFRYLKRVIVTPAVYRCF 60

Query: 61  TRLYPGFTYRHWAGVGPSTNPFGLAGTCVFIKQSGPPSHCDLRVTHPQAPLLPKLRGQFA 120
           TRLYPGFTYRHWAGVGPSTNPFGLAGTCVFIKQSGPPSHCDLRVTHPQAPLLPKLRGQFA
Sbjct: 61  TRLYPGFTYRHWAGVGPSTNPFGLAGTCVFIKQSGPPSHCDLRVTHPQAPLLPKLRGQFA 120

Query: 121 EFPRPGFPRHALGFSPRGTCVGSRYGRGGSEFPEGFSRAPGIGGTPLTGGHSRFHPVLAI 180
           EFPRPGFPRHALGFSPRGTCVGSRYGRGGSEFPEGFSRAPGIGGTPLTGGHSRFHPVLAI
Sbjct: 121 EFPRPGFPRHALGFSPRGTCVGSRYGRGGSEFPEGFSRAPGIGGTPLTGGHSRFHPVLAI 180

Query: 181 TALPGLIRLAGLIGRSAYPEASPSGLALPHLPPRYGNINPFPFPPRRVTGGVRTD 235
           TALPGLIRLAGLIGRSAYPEASPSGLALPHLPPRYGNINPFPFPPRRVTGGVRTD
Sbjct: 181 TALPGLIRLAGLIGRSAYPEASPSGLALPHLPPRYGNINPFPFPPRRVTGGVRTD 235


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.145    0.478 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106847988
Number of Sequences: 2977
Number of extensions: 5297197
Number of successful extensions: 11271
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11270
Number of HSP's gapped (non-prelim): 1
length of query: 235
length of database: 189,106,746
effective HSP length: 46
effective length of query: 189
effective length of database: 161,576,344
effective search space: 30537929016
effective search space used: 30537929016
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)