BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2216 207600 206812 -263 !not a gene!
         (263 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71245 hypothetical protein PH0220 - Pyrococcus horikoshii ...   243  2e-63

>pir||B71245 hypothetical protein PH0220 - Pyrococcus horikoshii
           >gi|3256606|dbj|BAA29289.1| (AP000001) 171aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 171
           
 Score =  243 bits (613), Expect = 2e-63
 Identities = 121/138 (87%), Positives = 121/138 (87%)

Query: 75  TLLSPPGFRLFSPPSRGAFQLSLTVLVRYRSRDVFRVGSRCLPASRRISNRRYSGSPETL 134
           TLLSPPGFRLFSPPSRGAFQLSLTVLVRYRSRDVFRVGSRCLPASRRISNRRYSGSPETL
Sbjct: 27  TLLSPPGFRLFSPPSRGAFQLSLTVLVRYRSRDVFRVGSRCLPASRRISNRRYSGSPETL 86

Query: 135 RAYAYGAITLSGAAFQRTSASPARVSYGGPTTPHPPNLVGPGFSLPCAAFGRPYSXXXXX 194
           RAYAYGAITLSGAAFQRTSASPARVSYGGPTTPHPPNLVGPGFSLP A FGRPYS     
Sbjct: 87  RAYAYGAITLSGAAFQRTSASPARVSYGGPTTPHPPNLVGPGFSLPSAVFGRPYSRHRFC 146

Query: 195 XXXXXXXXXXNSPRSPSG 212
                     NSPRSPSG
Sbjct: 147 FLFLRVLRCFNSPRSPSG 164


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.135    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93417431
Number of Sequences: 2977
Number of extensions: 3687603
Number of successful extensions: 8662
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8660
Number of HSP's gapped (non-prelim): 1
length of query: 263
length of database: 189,106,746
effective HSP length: 52
effective length of query: 211
effective length of database: 157,985,422
effective search space: 33334924042
effective search space used: 33334924042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)