BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2217 207259 206597 -221 !not a gene!
         (221 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71245 hypothetical protein PH0219 - Pyrococcus horikoshii ...   199  2e-50

>pir||A71245 hypothetical protein PH0219 - Pyrococcus horikoshii
           >gi|3256605|dbj|BAA29288.1| (AP000001) 125aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 125
           
 Score =  199 bits (502), Expect = 2e-50
 Identities = 92/118 (77%), Positives = 93/118 (77%)

Query: 104 VRHKPREVPFGNPRFDGCLRLAGXXXXXXXXXXXXXXXXXTGRLSVLTPYRRGQALLGPP 163
           +RHKPREVPFGNPRFDGCLRLAG                 TGRL VLTPYRRGQALLGPP
Sbjct: 1   MRHKPREVPFGNPRFDGCLRLAGAYRSLPRPSSAPRAEPSTGRLRVLTPYRRGQALLGPP 60

Query: 164 AYARXXXXXXIRGPWALPSRAGLGTCISSWWTGRDLNPGPPPCKGGAHTRLSYRPTKK 221
           AYAR      IRGPWALPSRAGLGTCISSWWTGRDLNPGPPPCKGGAHTRLSYRPT K
Sbjct: 61  AYARPSSSPPIRGPWALPSRAGLGTCISSWWTGRDLNPGPPPCKGGAHTRLSYRPTNK 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.146    0.494 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94203391
Number of Sequences: 2977
Number of extensions: 4019247
Number of successful extensions: 10540
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10539
Number of HSP's gapped (non-prelim): 1
length of query: 221
length of database: 189,106,746
effective HSP length: 44
effective length of query: 177
effective length of database: 162,773,318
effective search space: 28810877286
effective search space used: 28810877286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)