BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2219 205513 205151 -121 !not a gene!
         (121 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71244 hypothetical protein PH0217 - Pyrococcus horikoshii ...   232  1e-60
emb|CAC12547.1| (AL445067) conserved hypothetical protein [Therm...    75  5e-13

>pir||G71244 hypothetical protein PH0217 - Pyrococcus horikoshii
           >gi|3256603|dbj|BAA29286.1| (AP000001) 106aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 106
           
 Score =  232 bits (586), Expect = 1e-60
 Identities = 105/106 (99%), Positives = 106/106 (99%)

Query: 16  VPEARHWGSPRRGFPHCGGFAPAAPRRAWTRVSVSISGLPLSRPVPIFGLVGRYPTNYLI 75
           +PEARHWGSPRRGFPHCGGFAPAAPRRAWTRVSVSISGLPLSRPVPIFGLVGRYPTNYLI
Sbjct: 1   MPEARHWGSPRRGFPHCGGFAPAAPRRAWTRVSVSISGLPLSRPVPIFGLVGRYPTNYLI 60

Query: 76  GRRPILGRSLTAPFRPGDLPVPQAYGGLAPVSRGYPPPEGRLPTCY 121
           GRRPILGRSLTAPFRPGDLPVPQAYGGLAPVSRGYPPPEGRLPTCY
Sbjct: 61  GRRPILGRSLTAPFRPGDLPVPQAYGGLAPVSRGYPPPEGRLPTCY 106


>emb|CAC12547.1| (AL445067) conserved hypothetical protein [Thermoplasma
          acidophilum]
          Length = 81
          
 Score = 74.5 bits (180), Expect = 5e-13
 Identities = 36/56 (64%), Positives = 39/56 (69%)

Query: 9  FLHSGKAVPEARHWGSPRRGFPHCGGFAPAAPRRAWTRVSVSISGLPLSRPVPIFG 64
          F H      ++RH GSP R F HC  FAPAAPRRAWT VS SISGLPLS PVP+ G
Sbjct: 26 FRHQKSLDKKSRHSGSPCRAFAHCTVFAPAAPRRAWTVVSESISGLPLSGPVPVLG 81


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.145    0.487 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59477438
Number of Sequences: 2977
Number of extensions: 2910178
Number of successful extensions: 5943
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5941
Number of HSP's gapped (non-prelim): 2
length of query: 121
length of database: 189,106,746
effective HSP length: 43
effective length of query: 78
effective length of database: 163,371,805
effective search space: 12743000790
effective search space used: 12743000790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)