BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2220 (PAB2220) DE:Hypothetical protein
(202 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75209 hypothetical protein PAB2220 - Pyrococcus abyssi (st... 371 e-102
sp|O57953|Y214_PYRHO HYPOTHETICAL PROTEIN PH0214 >gi|7447536|pir... 342 2e-93
sp|Q58382|Y972_METJA HYPOTHETICAL PROTEIN MJ0972 >gi|2128609|pir... 91 1e-17
gi|11499694 conserved hypothetical protein [Archaeoglobus fulgid... 88 9e-17
sp|O66819|Y540_AQUAE HYPOTHETICAL PROTEIN AQ_540 >gi|7447533|pir... 87 1e-16
pir||D71256 conserved hypothetical integral membrane protein TP0... 87 1e-16
emb|CAC11168.1| (AL445063) hypothetical membrane protein [Thermo... 82 6e-15
sp|P25743|YCHE_ECOLI HYPOTHETICAL 23.5 KD PROTEIN IN ADHE-OPPA I... 81 1e-14
dbj|BAA16035.1| (D90852) ORF_ID:o250#8~similar to [SwissProt Acc... 81 1e-14
sp|Q59071|YG77_METJA HYPOTHETICAL PROTEIN MJ1677 >gi|2128069|pir... 80 1e-14
pir||E75039 multiple antibiotic resistance protein related PAB08... 80 1e-14
pir||B81315 probable integral membrane protein Cj1111c [imported... 80 1e-14
sp|O58499|Y760_PYRHO HYPOTHETICAL PROTEIN PH0760 >gi|7447538|pir... 79 4e-14
pir||E82125 conserved hypothetical protein VC2035 [imported] - V... 78 6e-14
sp|P57355|Y267_BUCAI HYPOTHETICAL PROTEIN BU267 >gi|10038942|dbj... 77 2e-13
gb|AAK40918.1| Conserved hypothetical protein [Sulfolobus solfat... 77 2e-13
emb|CAB57693.1| (Y18930) hypothetical protein [Sulfolobus solfat... 77 2e-13
pir||F75285 conserved hypothetical protein - Deinococcus radiodu... 76 4e-13
sp|O32244|YVBG_BACSU HYPOTHETICAL 22.6 KD PROTEIN IN OPUCA-ENO I... 75 8e-13
sp|P46851|YHGN_ECOLI HYPOTHETICAL 21.5 KDA PROTEIN IN ASD-GNTU I... 73 2e-12
emb|CAC12198.1| (AL445066) conserved hypothetical membrane prote... 73 2e-12
emb|CAC01363.1| (AL390975) putative integral membrane protein [S... 72 4e-12
>pir||E75209 hypothetical protein PAB2220 - Pyrococcus abyssi (strain Orsay)
>gi|5457633|emb|CAB49124.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 202
Score = 371 bits (943), Expect = e-102
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MLQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGK 60
MLQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGK
Sbjct: 1 MLQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGK 60
Query: 61 IILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAVPVATPLIAGP 120
IILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAVPVATPLIAGP
Sbjct: 61 IILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAVPVATPLIAGP 120
Query: 121 AAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM 180
AAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM
Sbjct: 121 AAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM 180
Query: 181 AIGAQMMISGAGGIVLSILKEA 202
AIGAQMMISGAGGIVLSILKEA
Sbjct: 181 AIGAQMMISGAGGIVLSILKEA 202
>sp|O57953|Y214_PYRHO HYPOTHETICAL PROTEIN PH0214 >gi|7447536|pir||D71244 hypothetical
protein PH0214 - Pyrococcus horikoshii
>gi|3256600|dbj|BAA29283.1| (AP000001) 202aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 202
Score = 342 bits (867), Expect = 2e-93
Identities = 179/202 (88%), Positives = 195/202 (95%)
Query: 1 MLQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGK 60
ML+EILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRAN+IGF+LLL+FAVAGK
Sbjct: 1 MLKEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANLIGFILLLLFAVAGK 60
Query: 61 IILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAVPVATPLIAGP 120
IILQDIFHIELDALRVAGGFVLFKIGLEALE GGMVTIK+EKNILALAAVPVATPLIAGP
Sbjct: 61 IILQDIFHIELDALRVAGGFVLFKIGLEALEGGGMVTIKREKNILALAAVPVATPLIAGP 120
Query: 121 AAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM 180
AAITAAITLTAE+GI+VS+ T IAI ITA LM+++LYLMRGI+KTALSVTIRIIGLFIM
Sbjct: 121 AAITAAITLTAEHGIIVSIVGTLIAIAITAALMMIALYLMRGISKTALSVTIRIIGLFIM 180
Query: 181 AIGAQMMISGAGGIVLSILKEA 202
AIGAQMMI+GAGGIVL+++K A
Sbjct: 181 AIGAQMMITGAGGIVLNLIKGA 202
>sp|Q58382|Y972_METJA HYPOTHETICAL PROTEIN MJ0972 >gi|2128609|pir||D64421 hypothetical
protein MJ0972 - Methanococcus jannaschii
>gi|1591635|gb|AAB98977.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 228
Score = 90.9 bits (222), Expect = 1e-17
Identities = 65/199 (32%), Positives = 110/199 (54%), Gaps = 15/199 (7%)
Query: 12 MLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHIEL 71
+ I IDP I +V L + E +I +A I ++LL+FA+ G I F I +
Sbjct: 30 LFITIDPIGLIPIVHSLTYPYPKEQRIRIIKKAIISSTVVLLLFALFGNYIF-GYFGITI 88
Query: 72 DALRVAGGFVLFKIGLEALESGGMVTIKKE------KNILALAAVPVATPLIAGPAAITA 125
DA RVAGG +LFKI + L + T K ++I ++ VP+A PLI+GP AIT
Sbjct: 89 DAFRVAGGILLFKIAWDMLHAEIPKTKHKPDERLDLEDIDSIVYVPLAIPLISGPGAITT 148
Query: 126 AITLTA------EYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFI 179
+ L + E G+VV + A++++ +++ L+ +++R +N ++ +RI+GL +
Sbjct: 149 TMILISKTQSILEKGVVV--LSILSAMLVSGIILSLTDFIIRRVNIYGINAFVRIMGLLL 206
Query: 180 MAIGAQMMISGAGGIVLSI 198
+AI Q++ +G G+ SI
Sbjct: 207 VAISVQIIFTGIVGLYNSI 225
>gi|11499694 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915499|sp|O28169|YL11_ARCFU HYPOTHETICAL PROTEIN
AF2111 >gi|7447531|pir||G69513 conserved hypothetical
protein AF2111 - Archaeoglobus fulgidus
>gi|2648415|gb|AAB89138.1| (AE000958) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 213
Score = 87.8 bits (214), Expect = 9e-17
Identities = 59/206 (28%), Positives = 106/206 (50%), Gaps = 10/206 (4%)
Query: 2 LQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKI 61
L +S + I+IDP + + L E F E + + RA II FL+L I V G
Sbjct: 7 LSFFFASFTTLFIIIDPPGNLPIFIALTERFSDEYREKISKRATIIAFLILFITMVTGGK 66
Query: 62 ILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEK-----NILALAAVPVATPL 116
IL D F + + +L++AGG +LF ++ L G K + ++ ++A P+A PL
Sbjct: 67 IL-DYFGVSISSLKIAGGILLFISSVDILLGGTRREAYKRRAEESIDVDSIAVFPLALPL 125
Query: 117 IAGPAAITAAITLTAEYG-IVVSVTATFIAIVITAVLMLLSLY---LMRGINKTALSVTI 172
GP AITA I L ++ G +V+ + A ++ +++ L +Y ++R + ++ +
Sbjct: 126 YTGPGAITAGIVLYSQAGDVVMKLLVVLSAALVYSIVRLSHIYSAPIIRLLGRSGADIAA 185
Query: 173 RIIGLFIMAIGAQMMISGAGGIVLSI 198
RI+ +F+ AI + + G ++S+
Sbjct: 186 RILAIFLAAIAVEFVFDGLAEKLVSM 211
>sp|O66819|Y540_AQUAE HYPOTHETICAL PROTEIN AQ_540 >gi|7447533|pir||G70348 conserved
hypothetical protein aq_540 - Aquifex aeolicus
>gi|2983179|gb|AAC06780.1| (AE000694) hypothetical
protein [Aquifex aeolicus]
Length = 214
Score = 87.4 bits (213), Expect = 1e-16
Identities = 55/193 (28%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 10 LLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHI 69
L +L +++P + +V L ++ E+++ + ++A++ F +L F ++G ++ + I
Sbjct: 18 LSLLAIMNPFSSVPVVISLMNEYSKEEIRVIALKASVYAFFILTFFLISGDLLFR-FMGI 76
Query: 70 ELDALRVAGGFVLFKIGLEALESGGMVTIKKEK--NILA------LAAVPVATPLIAGPA 121
L A +V GG +LF I L ++ G VT +K K I A +A +P+A PL+AGP
Sbjct: 77 TLPAFKVGGGILLFLIALNLVQ--GEVTKEKGKAHEIEAALRRDNIALIPLAMPLLAGPG 134
Query: 122 AITAAITLTAEYGIVVSVTATFIAIVITA----VLMLLSLYLMRGINKTALSVTIRIIGL 177
+IT + L + A F AI +++ V+ LS + R + +T +++ RI G+
Sbjct: 135 SITTVLVLRGYLNTLEGKVALFCAIFLSSFTAFVVYSLSTFFYRVLGRTGINLITRISGI 194
Query: 178 FIMAIGAQMMISG 190
++AI Q ++ G
Sbjct: 195 LLLAISVQFVVDG 207
>pir||D71256 conserved hypothetical integral membrane protein TP0988 - syphilis
spirochete >gi|3323312|gb|AAC65944.1| (AE001266)
conserved hypothetical integral membrane protein
[Treponema pallidum]
Length = 278
Score = 87.4 bits (213), Expect = 1e-16
Identities = 53/195 (27%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 5 ILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQ 64
I S+A +L +IDP I +V + E +I R ++G +L+L F GK+ L
Sbjct: 86 IWSTAFTLLFIIDPIGNIPVVLSVLRTVPAERHTRIIFRELLLGLVLMLSFLFCGKVFLS 145
Query: 65 DIFHIELDALRVAGGFVLFKIGLEAL--ESGGMVTIKKEKNILALAAVPVATPLIAGPAA 122
+F +E +++AG +LF +G++ + + + + +E+ + VP+ATP+IAGP+A
Sbjct: 146 -LFQLETGVMKMAGSVILFLVGIKMVFPDQHALPSTTEEEPFI----VPIATPMIAGPSA 200
Query: 123 ITAAITLTAEYGI--VVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM 180
T + + G + + A +A + ++M+ + L R + + ++ RI G+ ++
Sbjct: 201 FTTLVIMGETKGTSRLATCAALLVAWTLACLIMISAPCLYRLLKEKGITALERITGILLL 260
Query: 181 AIGAQMMISGAGGIV 195
+ QM + GA GI+
Sbjct: 261 ILSIQMCVEGARGII 275
>emb|CAC11168.1| (AL445063) hypothetical membrane protein [Thermoplasma acidophilum]
Length = 213
Score = 81.5 bits (198), Expect = 6e-15
Identities = 54/198 (27%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 12 MLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHIEL 71
+ M++P + ++ + E + +D + ++ A + L+L F + G I + ++ I +
Sbjct: 14 LFAMVNPIGALPVLVSVTEGYSKDDFERVVRYAAMSEALMLFSFMLIG-IYIFEVLGINI 72
Query: 72 DALRVAGGFVLFKIGLEALESGGMVT----IKKEKNI--LALAAVPVATPLIAGPAAITA 125
+ +VAGG +LFK+ + L+ T + E++I ++ P+ TPL+AGP +ITA
Sbjct: 73 NDFKVAGGVLLFKVAFDMLQGRTSTTKLTPAETEESIERTSIGIAPIGTPLLAGPGSITA 132
Query: 126 AITLTAEYGI-----VVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFIM 180
AI Y + + V + + +VI+ ++ S L + + KT + RI+GL +
Sbjct: 133 AIIYFNSYSVNIPEKIAVVISVSLVVVISYFILHYSSVLFKYLGKTGSLIISRIMGLLLA 192
Query: 181 AIGAQMMISGAGGIVLSI 198
AI M++G IV SI
Sbjct: 193 AIAVDFMVTGLAFIVKSI 210
>sp|P25743|YCHE_ECOLI HYPOTHETICAL 23.5 KD PROTEIN IN ADHE-OPPA INTERGENIC REGION
>gi|7447530|pir||E64871 probable membrane protein ychE -
Escherichia coli >gi|1787494|gb|AAC74324.1| (AE000222)
putative channel protein [Escherichia coli K12]
>gi|4210346|emb|CAA42090.1| (X59501) hypothetical 23.5
kDa protein in adhE-opaA intergenic region [Escherichia
coli]
Length = 215
Score = 80.8 bits (196), Expect = 1e-14
Identities = 53/168 (31%), Positives = 93/168 (54%), Gaps = 11/168 (6%)
Query: 42 IRANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALES--GGMVTIK 99
+ AN+ ++L I G ILQ +F I +D+ R+AGG ++ I + + G K
Sbjct: 48 LTANLSVAIILWISLFLGDTILQ-LFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNK 106
Query: 100 KEKNILA----LAAVPVATPLIAGPAAITAAITLTAEYGIVVSVTATFIAIVITAV---- 151
+EK+ A + VP+A PL+AGP AI++ I Y + + F+AI + A+
Sbjct: 107 QEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWG 166
Query: 152 LMLLSLYLMRGINKTALSVTIRIIGLFIMAIGAQMMISGAGGIVLSIL 199
L ++ +L+R + +T ++V RI+GL +MA+G + +++G GI +L
Sbjct: 167 LFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLL 214
>dbj|BAA16035.1| (D90852) ORF_ID:o250#8~similar to [SwissProt Accession Number
P25743] [Escherichia coli] >gi|4062810|dbj|BAA36122.1|
(D90759) Hypothetical 19.7 kd protein in adhE-oppA
intergenic region. [Escherichia coli]
Length = 182
Score = 80.8 bits (196), Expect = 1e-14
Identities = 53/168 (31%), Positives = 93/168 (54%), Gaps = 11/168 (6%)
Query: 42 IRANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALES--GGMVTIK 99
+ AN+ ++L I G ILQ +F I +D+ R+AGG ++ I + + G K
Sbjct: 15 LTANLSVAIILWISLFLGDTILQ-LFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNK 73
Query: 100 KEKNILA----LAAVPVATPLIAGPAAITAAITLTAEYGIVVSVTATFIAIVITAV---- 151
+EK+ A + VP+A PL+AGP AI++ I Y + + F+AI + A+
Sbjct: 74 QEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWG 133
Query: 152 LMLLSLYLMRGINKTALSVTIRIIGLFIMAIGAQMMISGAGGIVLSIL 199
L ++ +L+R + +T ++V RI+GL +MA+G + +++G GI +L
Sbjct: 134 LFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLL 181
>sp|Q59071|YG77_METJA HYPOTHETICAL PROTEIN MJ1677 >gi|2128069|pir||C64509 hypothetical
protein homolog MJ1677 - Methanococcus jannaschii
>gi|1592344|gb|AAB99699.1| (U67608) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 205
Score = 80.4 bits (195), Expect = 1e-14
Identities = 55/204 (26%), Positives = 107/204 (51%), Gaps = 10/204 (4%)
Query: 2 LQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKI 61
LQ + + + +++P + + L E + ++ + + I +LL FA+ G+
Sbjct: 3 LQYFILAFSSIFSILNPFGAVPVFITLTESYPKKERDLVAKKTVIYALAILLAFALFGEW 62
Query: 62 ILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEK-----NILALAAVPVATPL 116
IL+ F I LDA ++AGG +L I L+ + I +++ I +A +P+ATPL
Sbjct: 63 ILK-FFGISLDAFKIAGGILLLLISLDMVRGQQEAKIHRKEIEAAYEIDEIALMPLATPL 121
Query: 117 IAGPAAITAAITLTAEYGIV----VSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTI 172
+AGP +ITA + AE + + + A +++ IT + +L + ++ I + + +
Sbjct: 122 LAGPGSITACMVAMAEASDIGDKFLVILAILLSLGITYLTLLSAESVLDRIGRLGIRILT 181
Query: 173 RIIGLFIMAIGAQMMISGAGGIVL 196
R++GL + AI QM+++G G +L
Sbjct: 182 RMMGLILTAIAVQMIVNGIRGALL 205
>pir||E75039 multiple antibiotic resistance protein related PAB0863 - Pyrococcus
abyssi (strain Orsay) >gi|5458723|emb|CAB50210.1|
(AJ248287) MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN
related [Pyrococcus abyssi]
Length = 201
Score = 80.4 bits (195), Expect = 1e-14
Identities = 55/156 (35%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 43 RANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEK 102
+ +I + LL FA+ GK I + F +DA +AGG +LF++G+E L SG + ++K ++
Sbjct: 46 KVSITVLVTLLTFALVGKWIFK-FFGSSVDAFAIAGGILLFRMGMEML-SGKLSSVKIDE 103
Query: 103 NILAL---AAVPVATPLIAGPAAITAA-ITLTAEYGIVVSVTATFIAIVITAVLMLLS-L 157
+ L A +P+A PLI+GP AIT + +T E + V AT IAI I+ ++L S
Sbjct: 104 EDVTLEEVAVIPLAIPLISGPGAITTVMLYMTRESPPI--VIATIIAIGISVYIILASGN 161
Query: 158 YLMRGINKTALSVTIRIIGLFIMAIGAQMMISGAGG 193
++ + + + VT R++GL + ++ QM+I+G G
Sbjct: 162 KIIEKLGRVGIKVTTRMMGLILTSMAIQMIINGIKG 197
>pir||B81315 probable integral membrane protein Cj1111c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968545|emb|CAB73366.1| (AL139077) putative integral
membrane protein [Campylobacter jejuni]
Length = 208
Score = 80.4 bits (195), Expect = 1e-14
Identities = 48/191 (25%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
Query: 8 SALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIF 67
+A+ +L +++P + + + + K L F ++L+F ++G + + IF
Sbjct: 11 AAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLFRTILYTAFTIVLVFLLSGPLFMNYIF 70
Query: 68 HIELDALRVAGGFVLFKIGLEALESGGMVTIKK--------EKNILALAAVPVATPLIAG 119
+ LD LRV+GG VL + ++ L + K +K IL + +P+A P++ G
Sbjct: 71 RVSLDDLRVSGGLVLIIMAIKNLLFSTKIATKDFSSYQDMDDKEILRQSLIPMAFPMLVG 130
Query: 120 PAAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRIIGLFI 179
P + + I + + G+ V++ IA + +L + + + + K L V RI +FI
Sbjct: 131 PGTLASVIVIAEDGGLDVALGGVMIAFIFMFILFHFAATIEKIVGKLILHVFSRIAQVFI 190
Query: 180 MAIGAQMMISG 190
+A+G +M+I G
Sbjct: 191 VAMGFKMIIVG 201
>sp|O58499|Y760_PYRHO HYPOTHETICAL PROTEIN PH0760 >gi|7447538|pir||A71124 hypothetical
protein PH0760 - Pyrococcus horikoshii
>gi|3257168|dbj|BAA29851.1| (AP000003) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 78.8 bits (191), Expect = 4e-14
Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
Query: 43 RANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEK 102
+ +I F+ L +FA+ G+ I + F +DA +AGG +LF++G+E L SG + ++K ++
Sbjct: 46 KVSITVFITLTVFALVGQWIFK-FFGSSIDAFAIAGGILLFRMGMEML-SGKLSSVKIDE 103
Query: 103 NILAL---AAVPVATPLIAGPAAITAA-ITLTAEY-GIVVSVTATFIAIVITAVLMLLS- 156
+ L A +P+A PLI+GP AIT + +T E GIV+ T IAI +T +L S
Sbjct: 104 EDVTLEEVAVIPLAIPLISGPGAITTVMLYMTKESPGIVI---LTIIAIGLTTYGILYSG 160
Query: 157 LYLMRGINKTALSVTIRIIGLFIMAIGAQMMISGAGG 193
++ + + + VT R++GL + ++ QM+I+G G
Sbjct: 161 NKIIERLGRVGVKVTTRMMGLILTSMAMQMIINGIKG 197
>pir||E82125 conserved hypothetical protein VC2035 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656581|gb|AAF95183.1|
(AE004278) conserved hypothetical protein [Vibrio
cholerae]
Length = 212
Score = 78.4 bits (190), Expect = 6e-14
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 13/168 (7%)
Query: 34 IEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESG 93
+E+ ANI ++L+I +AG+++L D+F I LD+ RVAGG +L I ++ SG
Sbjct: 38 LEEKNKTAATANIAVAIILIIALLAGQMLL-DLFSISLDSFRVAGGLLLLSIAF-SMMSG 95
Query: 94 GMVTIKKEKNILA-------LAAVPVATPLIAGPAAITAAITLTAEYGIVVSVTATFIAI 146
+ K+ K + +A VP+A PL+AGP AI++ I + Y ++ + +
Sbjct: 96 KLGEDKQNKQEKSEYISREQIAVVPLAMPLMAGPGAISSTIVYGSRYPNMLDTLGIILTV 155
Query: 147 VITA----VLMLLSLYLMRGINKTALSVTIRIIGLFIMAIGAQMMISG 190
V + +L + Y++R + +T ++V RI+GL + A+G + + +G
Sbjct: 156 VAFSFCSWLLFRSAPYIVRLLGQTGINVITRIMGLILGALGIEFIANG 203
>sp|P57355|Y267_BUCAI HYPOTHETICAL PROTEIN BU267 >gi|10038942|dbj|BAB12977.1| (AP001118)
hypothetical protein [Buchnera sp. APS]
Length = 215
Score = 76.9 bits (186), Expect = 2e-13
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 15 MIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHIELDAL 74
+++P I + + + + + K I AN L+LLI G IL +IF I +++
Sbjct: 21 LVNPIGMIPIFTTMTNNQSFLERKKTNIVANFSVSLILLISLFFGSNIL-NIFGISINSF 79
Query: 75 RVAGGFVLFKIGLEALESGGMVTIK------KEKNILALAAVPVATPLIAGPAAITAAIT 128
R+AGG ++ I + + TIK +E I ++ VP+A PLIAGP AI++ I
Sbjct: 80 RIAGGILIISIAFSMISGQFIKTIKTKKETKEENKIDNISVVPLAMPLIAGPGAISSTIV 139
Query: 129 LTAEYGIVVSVTATFIAIVITAVLMLLSL----YLMRGINKTALSVTIRIIGLFIMAIGA 184
+ Y ++ + I + + + L Y+++ + T +++ RI+GL +M++G
Sbjct: 140 WSTYYSSWANLFLCSLVIFLFSFVCWLCFEAAPYVVQILGNTGINIITRIMGLLLMSLGI 199
Query: 185 QMMISGAGGIVLSIL 199
+ + +G G I +L
Sbjct: 200 EFISTGIGAIFPGLL 214
>gb|AAK40918.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 202
Score = 76.9 bits (186), Expect = 2e-13
Identities = 54/201 (26%), Positives = 98/201 (47%), Gaps = 9/201 (4%)
Query: 2 LQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKS-----LIIRANIIGFLLLLIFA 56
L I A + ++DP + + L E+F+ L+ + +I +LLL F+
Sbjct: 4 LVSIPEIAFKLYAIMDPLSILPYLIALYEEFNRNSQNKISWRFLVNKLSIAVTVLLLFFS 63
Query: 57 VAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAV-PVATP 115
+ G +L I + AL + GG +L +G++ L GG +K + + A + P+ATP
Sbjct: 64 ILGGPLLA-FLGISVSALEIGGGIILVYLGVDTL--GGFQQLKFLSSRIEEAIITPIATP 120
Query: 116 LIAGPAAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRII 175
LI GP +T ITL+ +++ + + +A ++ + +LL ++R + T R +
Sbjct: 121 LIVGPGTMTGLITLSVSNNLIILILGSLLAALLVYLSLLLGPIIIRILGNTGTVAVGRFM 180
Query: 176 GLFIMAIGAQMMISGAGGIVL 196
+ I A G Q++I G I L
Sbjct: 181 AIIIAAFGVQLIIDGISQIKL 201
>emb|CAB57693.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 202
Score = 76.9 bits (186), Expect = 2e-13
Identities = 54/201 (26%), Positives = 98/201 (47%), Gaps = 9/201 (4%)
Query: 2 LQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKS-----LIIRANIIGFLLLLIFA 56
L I A + ++DP + + L E+F+ L+ + +I +LLL F+
Sbjct: 4 LVSIPEIAFKLYAIMDPLSILPYLIALYEEFNRNSQNKISWRFLVNKLSIAVTVLLLFFS 63
Query: 57 VAGKIILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAV-PVATP 115
+ G +L I + AL + GG +L +G++ L GG +K + + A + P+ATP
Sbjct: 64 ILGGPLLA-FLGISVSALEIGGGIILVYLGVDTL--GGFQQLKFLSSRIEEAIITPIATP 120
Query: 116 LIAGPAAITAAITLTAEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINKTALSVTIRII 175
LI GP +T ITL+ +++ + + +A ++ + +LL ++R + T R +
Sbjct: 121 LIVGPGTMTGLITLSVSNNLIILILGSLLAALLVYLSLLLGPIIIRILGNTGTVAVGRFM 180
Query: 176 GLFIMAIGAQMMISGAGGIVL 196
+ I A G Q++I G I L
Sbjct: 181 AIIIAAFGVQLIIDGISQIKL 201
>pir||F75285 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460155|gb|AAF11889.1|AE002065_6 (AE002065)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 217
Score = 75.7 bits (183), Expect = 4e-13
Identities = 57/204 (27%), Positives = 103/204 (49%), Gaps = 17/204 (8%)
Query: 10 LLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHI 69
L ML+++DP + L D + K L ++A ++ ++ +F + G+ +L+ + I
Sbjct: 15 LTMLVIMDPVGLAPMFIALARDRPAFEKKRLALKATLVAGGIIFVFGLFGRALLEHL-GI 73
Query: 70 ELDALRVAGGFVLFKIGLE---ALESGGMVTIKKEKNILA---LAAVPVATPLIAGPAAI 123
L A R+AGG +LF + L+ A +S T ++E+ ++ P+A PLIAGP +
Sbjct: 74 SLSAFRIAGGILLFMVALDMVSARQSATRETPEEEREAQEREDISVFPLAIPLIAGPGTL 133
Query: 124 TAAITLT-AEYGIVVSVTATFIAIVITAVLMLLSLYLMRGINK----TALSVTIRIIGLF 178
+ + T A +G + + A F+ I L L+L L I K T ++V R++G+
Sbjct: 134 ASIMIQTNAAHGNPILMFAVFLVTGIVLALCYLALRLSNQIAKALGLTGVNVVTRVLGVL 193
Query: 179 IMAIGAQMMISGA-----GGIVLS 197
+ A+ Q + G GG+ L+
Sbjct: 194 LGALAVQYIADGTLELMRGGLPLN 217
>sp|O32244|YVBG_BACSU HYPOTHETICAL 22.6 KD PROTEIN IN OPUCA-ENO INTERGENIC REGION
>gi|7447532|pir||F70029 conserved hypothetical protein
yvbG - Bacillus subtilis >gi|2635898|emb|CAB15390.1|
(Z99121) similar to hypothetical proteins [Bacillus
subtilis]
Length = 211
Score = 74.5 bits (180), Expect = 8e-13
Identities = 53/205 (25%), Positives = 96/205 (45%), Gaps = 12/205 (5%)
Query: 1 MLQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGK 60
M I+ + + + +P + + L E + + K++ +A I+ F +L F V G
Sbjct: 2 MFSFIVHVFISLFAVSNPIGNVPIFLTLTEGYTAAERKAIARKAAILSFFILAAFLVFGH 61
Query: 61 IILQDIFHIELDALRVAGGFVLFKIGLEAL-------ESGGMVTIKKEKNILALAAVPVA 113
+I + +F I + ALRVAGG +F I L +S K+ K ++ P++
Sbjct: 62 LIFK-LFDINIHALRVAGGIFIFGIAYNLLNAKESHVQSLHHDEHKESKEKADISVTPLS 120
Query: 114 TPLIAGPAAITAAITLTAEYGIVVSVTATFIAIVITAVLMLL----SLYLMRGINKTALS 169
P+IAGP I ++L+A + + A I I L L S ++ + KT ++
Sbjct: 121 IPIIAGPGTIATVMSLSAGHSGIGHYAAVMIGIAAVIALTFLFFHYSAFISSKLGKTEMN 180
Query: 170 VTIRIIGLFIMAIGAQMMISGAGGI 194
V R++GL + + M+ +G G+
Sbjct: 181 VITRLMGLILAVVAVGMIGAGLKGM 205
>sp|P46851|YHGN_ECOLI HYPOTHETICAL 21.5 KDA PROTEIN IN ASD-GNTU INTERGENIC REGION (O197)
>gi|7447529|pir||E65139 hypothetical protein b3434 -
Escherichia coli (strain K-12) >gi|606369|gb|AAA58232.1|
(U18997) ORF_o197 [Escherichia coli]
>gi|1789842|gb|AAC76459.1| (AE000420) orf, hypothetical
protein [Escherichia coli K12]
Length = 197
Score = 73.4 bits (177), Expect = 2e-12
Identities = 49/197 (24%), Positives = 103/197 (51%), Gaps = 15/197 (7%)
Query: 2 LQEILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKI 61
+ EI+S+A+L+++++DP + + + + + +++++R +I L++L+F AG+
Sbjct: 1 MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVRELLIALLVMLVFLFAGEK 60
Query: 62 ILQDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAA------VPVATP 115
IL + + + ++GG +LF I ++ M+ N L A VP+A P
Sbjct: 61 ILA-FLSLRAETVSISGGIILFLIAIK------MIFPSASGNSSGLPAGEEPFIVPLAIP 113
Query: 116 LIAGPAAITAAITLTAEYGIVVS--VTATFIAIVITAVLMLLSLYLMRGINKTALSVTIR 173
L+AGP + + L+ +Y + V A +A T V++L S +R + + ++ R
Sbjct: 114 LVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFLRLLGEKGVNALER 173
Query: 174 IIGLFIMAIGAQMMISG 190
++GL ++ + QM + G
Sbjct: 174 LMGLILVMMATQMFLDG 190
>emb|CAC12198.1| (AL445066) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 202
Score = 73.4 bits (177), Expect = 2e-12
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 10/202 (4%)
Query: 4 EILSSALLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIIL 63
E L + + I+IDP ++L + + +F+ + A G ++L++FA+AG+ I+
Sbjct: 6 EFLKIFIPLFIVIDPFGSLVLFTSMTYNFNESEKLRATKDAVFYGGIILVLFALAGEYII 65
Query: 64 QDIFHIELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNI-LALAAVPVATPLIAGPAA 122
F I ++AL +AGG +L + +E + G + + + VP ATP++AGP A
Sbjct: 66 Y-FFGISIEALEMAGGIILLLMAVEMIMEGNRPKSSGSEIVDYDIGIVPFATPMLAGPGA 124
Query: 123 ITAAITLTAEYGIVVSVTATFIAIVITAVLMLL----SLYLMRGINKTALSVTIRIIGLF 178
I+ I L G +++ T I+I I ++ + S + + I + RI GL
Sbjct: 125 ISLVIILMK--GPIIAKIYTIISIAIIFAMVYIFFKWSSVVSKFIGAKVMKAISRIFGLL 182
Query: 179 IMAIGAQMMISGAGGIVLSILK 200
+ Q I + LS+LK
Sbjct: 183 LAGFAIQYFIDAI--VALSLLK 202
>emb|CAC01363.1| (AL390975) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 201
Score = 72.2 bits (174), Expect = 4e-12
Identities = 54/190 (28%), Positives = 95/190 (49%), Gaps = 7/190 (3%)
Query: 10 LLMLIMIDPSDKILLVSLLREDFHIEDVKSLIIRANIIGFLLLLIFAVAGKIILQDIFHI 69
L + +++DP + L + K + ++A + ++ +F + G IL D H+
Sbjct: 12 LTLFVIMDPPGITPIFLALTSGRPGKVQKRMALQAVCVAGGVITVFGLLGHQIL-DYLHV 70
Query: 70 ELDALRVAGGFVLFKIGLEALESGGMVTIKKEKNILALAAVPVATPLIAGPAAITAAITL 129
+ AL +AGG +L I L+ L G K+ + +A VP+ PL+AGP AI + I
Sbjct: 71 SVPALMIAGGLLLLLIALDLLT--GKTDEPKQTKDVNVALVPLGMPLLAGPGAIVSVILA 128
Query: 130 TAEYGIV---VSVTATFIAI-VITAVLMLLSLYLMRGINKTALSVTIRIIGLFIMAIGAQ 185
+ V VSV A +AI V+ ++M SL ++R I + + R+ G+ + AI Q
Sbjct: 129 VQKADSVTTQVSVWAAILAIHVVLWLVMRYSLLIIRVIKDGGVVLVTRLAGMMLSAIAVQ 188
Query: 186 MMISGAGGIV 195
+I+G ++
Sbjct: 189 QIINGVTQVI 198
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.145 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57037970
Number of Sequences: 2977
Number of extensions: 1963709
Number of successful extensions: 11218
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11183
Number of HSP's gapped (non-prelim): 23
length of query: 202
length of database: 189,106,746
effective HSP length: 57
effective length of query: 145
effective length of database: 154,992,987
effective search space: 22473983115
effective search space used: 22473983115
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 163 (67.9 bits)