BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2224 (PAB2224) DE:Hypothetical protein
(131 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75208 hypothetical protein PAB2224 - Pyrococcus abyssi (st... 264 4e-70
pir||G71243 hypothetical protein PH0209 - Pyrococcus horikoshii ... 181 3e-45
sp|Q58101|Y688_METJA HYPOTHETICAL PROTEIN MJ0688 >gi|2826309|gb|... 98 4e-20
pir||H64385 hypothetical protein MJ0688 - Methanococcus jannaschii 95 3e-19
gi|11500020 hypothetical conserved protein [Archaeoglobus fulgidus] 91 4e-18
>pir||G75208 hypothetical protein PAB2224 - Pyrococcus abyssi (strain Orsay)
>gi|5457627|emb|CAB49118.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 131
Score = 264 bits (667), Expect = 4e-70
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE
Sbjct: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
Query: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT
Sbjct: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
Query: 121 YRGIPIYKWEP 131
YRGIPIYKWEP
Sbjct: 121 YRGIPIYKWEP 131
>pir||G71243 hypothetical protein PH0209 - Pyrococcus horikoshii
>gi|3256595|dbj|BAA29278.1| (AP000001) 131aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 131
Score = 181 bits (454), Expect = 3e-45
Identities = 79/131 (60%), Positives = 103/131 (78%)
Query: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
MIEVAE IARE+++GK++E+G+GFY +AKRL+E G D+L +DIN+ A+ A+ G+
Sbjct: 1 MIEVAEIIAREIRRGKIVEIGVGFYLEVAKRLRESGIDILVVDINEKAINYARKQGIKGV 60
Query: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
VDDIFNP + +Y AKAIYSIRP PEMM +L +++ +K+P YIVPLTGD P GMKLI
Sbjct: 61 VDDIFNPTLGIYKDAKAIYSIRPAPEMMKPLLDLARKLKIPLYIVPLTGDRTPNGMKLIN 120
Query: 121 YRGIPIYKWEP 131
Y+GIPIYKWEP
Sbjct: 121 YKGIPIYKWEP 131
>sp|Q58101|Y688_METJA HYPOTHETICAL PROTEIN MJ0688 >gi|2826309|gb|AAB98683.1| (U67516)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 147
Score = 97.9 bits (240), Expect = 4e-20
Identities = 55/127 (43%), Positives = 75/127 (58%), Gaps = 1/127 (0%)
Query: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
++E + A E K+ E+GIGF +A+ L + FD++AIDIN+ A+ AK GLNA
Sbjct: 16 IVEFIKKFAEENNCKKIAEIGIGFKFDVARELSKY-FDLIAIDINEKAIEKAKLLGLNAY 74
Query: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
DD+FNPNISLY IYSIRP ++ YIL +SK V I PL + + +KL
Sbjct: 75 KDDLFNPNISLYKNIDLIYSIRPPRDLQPYILDLSKKVNANLIIRPLLNEMPIKELKLKN 134
Query: 121 YRGIPIY 127
Y+G Y
Sbjct: 135 YKGEVFY 141
>pir||H64385 hypothetical protein MJ0688 - Methanococcus jannaschii
Length = 147
Score = 95.2 bits (233), Expect = 3e-19
Identities = 54/127 (42%), Positives = 74/127 (57%), Gaps = 1/127 (0%)
Query: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
++E + A E K+ E+GIGF +A+ L + D++AIDIN+ A+ AK GLNA
Sbjct: 16 IVEFIKKFAEENNCKKIAEIGIGFKFDVARELSKYX-DLIAIDINEKAIEKAKLLGLNAY 74
Query: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
DD+FNPNISLY IYSIRP ++ YIL +SK V I PL + + +KL
Sbjct: 75 KDDLFNPNISLYKNIDLIYSIRPPRDLQPYILDLSKKVNANLIIRPLLNEMPIKELKLKN 134
Query: 121 YRGIPIY 127
Y+G Y
Sbjct: 135 YKGEVFY 141
>gi|11500020 hypothetical conserved protein [Archaeoglobus fulgidus]
Length = 128
Score = 91.3 bits (223), Expect = 4e-18
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 1 MIEVAEFIAREVKKGKVIEVGIGFYTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAE 60
M+++A++IA E +GKV+EVGIG +T +A+ L GF+V A D+ V G
Sbjct: 1 MLQIADYIA-ENYRGKVVEVGIGRFTAVAELLARRGFEVFATDV----VERRAPEGCRFY 55
Query: 61 VDDIFNPNISLYMGAKAIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQGMKLIT 120
VDD+ PN+ +Y GA IYS+RP PE+ + I+++S+ V I PL GD + +++
Sbjct: 56 VDDVTKPNLKIYEGASLIYSLRPPPELFSAIVEVSRKVGADCLIKPLYGDYME--ARIVN 113
Query: 121 YRGIPIY 127
Y+G Y
Sbjct: 114 YKGAQFY 120
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47156586
Number of Sequences: 2977
Number of extensions: 1889630
Number of successful extensions: 4698
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4691
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 189,106,746
effective HSP length: 52
effective length of query: 79
effective length of database: 157,985,422
effective search space: 12480848338
effective search space used: 12480848338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)