BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2230 (PAB2230) DE:sugar TRANSPORT SYSTEM PERMEASE PROTEIN
(313 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75208 sugar transport system permease protein PAB2230 - Py... 637 0.0
pir||C71243 hypothetical protein PH0205 - Pyrococcus horikoshii ... 580 e-164
pir||A72451 probable lactose transport system permease protein A... 347 8e-95
pir||C72378 sugar ABC transporter, permease protein - Thermotoga... 185 6e-46
pir||D72331 sugar ABC transporter, permease protein - Thermotoga... 99 5e-20
emb|CAB72405.1| (AL138978) putative integral membrane transport ... 99 5e-20
dbj|BAB05644.1| (AP001513) sugar transport system (permease) [Ba... 99 5e-20
emb|CAB95276.1| (AL359779) putative sugar transport integral mem... 99 8e-20
dbj|BAB05584.1| (AP001513) sugar transport system (permease) (bi... 98 1e-19
dbj|BAB06444.1| (AP001516) lactose transport system (permease) [... 97 3e-19
gb|AAC44394.1| (U43526) ORF-3 [Streptococcus pneumoniae] 95 1e-18
dbj|BAB05944.1| (AP001514) sugar transport system (permease) [Ba... 95 1e-18
pir||D82557 ABC transporter sugar permease XF2447 [imported] - X... 94 2e-18
dbj|BAB07408.1| (AP001519) sugar transport system (permease) [Ba... 92 6e-18
pir||G75206 maltodextrin transport system permease protein PAB01... 92 6e-18
emb|CAB59589.1| (AL132662) putative sugar transporter inner memb... 91 2e-17
sp|P29823|LACF_AGRRD LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN L... 90 2e-17
emb|CAA91221.1| (Z56279) integral membrane protein [Thermoanaero... 90 2e-17
emb|CAB65652.1| (AJ252161) putative maltose transport membrane p... 90 3e-17
dbj|BAB04796.1| (AP001510) glycerol-3-phosphate ABC transporter ... 89 5e-17
pir||T37130 probable transport system integral membrane protein ... 89 7e-17
dbj|BAB18103.1| (AB034969) cyclomaltodextrin transport membrane ... 89 7e-17
pir||A72283 maltose ABC transporter, permease protein - Thermoto... 89 9e-17
gb|AAG09707.1|AF218837_2 (AF218837) unknown [Pasteurella multocida] 88 2e-16
sp|O58968|YC15_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 87 2e-16
emb|CAB55715.1| (AL117387) putative binding protein dependent tr... 87 2e-16
pir||B69588 L-arabinose transport (integral membrane protein) ar... 87 3e-16
emb|CAA61935.1| (X89810) putative integral membrane protein [Bac... 87 3e-16
emb|CAB11326.1| (Z98604) possible sugar transport protein [Mycob... 87 3e-16
pir||H75503 maltose ABC transporter, permease protein - Deinococ... 87 4e-16
pir||S75971 hypothetical protein - Synechocystis sp. (strain PCC... 86 5e-16
sp|O31519|YESP_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y... 86 6e-16
emb|CAB59596.1| (AL132662) probable sugar transporter inner memb... 86 6e-16
sp|P55602|Y4OQ_RHISN PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y... 85 8e-16
pir||T36087 probable binding protein dependent transport protein... 85 8e-16
pir||S77536 lactose transport system permease protein lacF - Syn... 85 1e-15
pir||G72379 sugar ABC transporter, permease protein - Thermotoga... 85 1e-15
gb|AAK41418.1| Sugar transport protein, hypothetical [Sulfolobus... 84 2e-15
pir||S63615 malF protein homolog cymF - Klebsiella oxytoca >gi|8... 84 2e-15
pir||G70943 hypothetical protein Rv2040c - Mycobacterium tubercu... 83 3e-15
dbj|BAA28360.1| (D85027) integral membrane protein [Thermus sp. A4] 83 4e-15
emb|CAC11828.1| (AL445065) probable sugar ABC transporter, perme... 82 9e-15
emb|CAB71197.1| (AL138538) putative sugar transport system perme... 82 1e-14
sp|Q00750|MSMF_STRMU MULTIPLE SUGAR-BINDING TRANSPORT SYSTEM PER... 80 3e-14
sp|P37730|AMYD_THETU POTENTIAL STARCH DEGRADATION PRODUCTS TRANS... 80 3e-14
sp|Q9Z3R6|AGLF_RHIME ALPHA-GLUCOSIDES TRANSPORT SYSTEM PERMEASE ... 80 3e-14
dbj|BAB04621.1| (AP001510) L-arabinose transport system (permeas... 80 4e-14
sp|O32155|YURN_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 80 5e-14
pir||F72292 glycerol-3-phosphate ABC transporter, permease prote... 80 5e-14
gb|AAD51828.1|AF175299_3 (AF175299) ThuF [Sinorhizobium meliloti] 80 5e-14
pir||H70033 maltodextrin transport system permease homolog yvdH ... 79 8e-14
dbj|BAB04837.1| (AP001511) lactose transport system (permease) [... 79 8e-14
sp|P26467|MALF_SALTY MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 78 1e-13
pir||T35671 probable transmembrane transport protein - Streptomy... 78 1e-13
emb|CAB55533.1| (AL117322) putative binding-protein-dependent tr... 78 1e-13
sp|P02916|MALF_ECOLI MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 77 2e-13
sp|P18812|MALF_ENTAE MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 77 2e-13
sp|P77653|YCJO_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 77 3e-13
pir||E69585 sugar transport amyD - Bacillus subtilis >gi|2293307... 77 3e-13
emb|CAB95283.1| (AL359779) putative sugar transport integral mem... 76 4e-13
gb|AAC45767.1| (AF018073) sorbitol/mannitol transport inner memb... 76 5e-13
gb|AAD33665.1|AF135398_2 (AF135398) putative integral membrane p... 76 5e-13
emb|CAB61807.1| (AL133236) putative integral membrane transport ... 76 5e-13
pir||E70703 probable uspA protein - Mycobacterium tuberculosis (... 75 9e-13
emb|CAB86098.1| (AL163003) putative sugar transporter inner memb... 75 9e-13
sp|O58759|YA38_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 75 1e-12
gb|AAF37728.1| (AF086819) cellobiose transport permease BglA [Th... 75 1e-12
gb|AAF70321.1|AF260245_1 (AF260245) MalF [Vibrio cholerae] 75 1e-12
pir||G82397 maltose ABC transporter, permease protein VCA0944 [i... 75 1e-12
emb|CAB90878.1| (AL355752) putative maltose permease [Streptomyc... 74 2e-12
dbj|BAB07400.1| (AP001519) sugar ABC transporter (permease) [Bac... 74 2e-12
emb|CAC11274.1| (AL445063) inner membrane protein of trehalose/m... 74 2e-12
emb|CAB61917.1| (AL133278) putative transport system permease pr... 73 6e-12
dbj|BAB05739.1| (AP001514) maltose/maltodextrin transport system... 72 1e-11
pir||T36913 probable integral membrane sugar transport protein -... 71 1e-11
pir||F75187 probable sugar abc transporter, permease protein PAB... 71 1e-11
pir||T47064 hypothetical protein [imported] - Yersinia pestis >g... 71 2e-11
dbj|BAB07565.1| (AP001520) ABC transporter (permease) [Bacillus ... 71 2e-11
pir||T35790 probable transmembrane sugar transport protein - Str... 70 3e-11
gb|AAC04469.1| (AF007800) MtlF [Pseudomonas fluorescens] 70 4e-11
pir||T46751 inner membrane protein malF [validated] - Thermococc... 70 4e-11
pir||E72357 sugar ABC transporter, permease protein - Thermotoga... 70 4e-11
gb|AAK42958.1| ABC transporter, permease (glucose) [Sulfolobus s... 69 5e-11
sp|Q04698|MALC_STRPN MALTODEXTRIN TRANSPORT SYSTEM PERMEASE PROT... 69 7e-11
emb|CAB61178.1| (AL132973) putative binding protein dependent tr... 69 9e-11
dbj|BAB06644.1| (AP001517) maltose/maltodextrin transport system... 69 9e-11
>pir||C75208 sugar transport system permease protein PAB2230 - Pyrococcus abyssi
(strain Orsay) >gi|5457623|emb|CAB49114.1| (AJ248283)
sugar TRANSPORT SYSTEM PERMEASE PROTEIN [Pyrococcus
abyssi]
Length = 313
Score = 637 bits (1625), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MKFDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYR 60
MKFDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYR
Sbjct: 1 MKFDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYR 60
Query: 61 LVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM 120
LVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM
Sbjct: 61 LVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM 120
Query: 121 SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS 180
SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS
Sbjct: 121 SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS 180
Query: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP
Sbjct: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
Query: 241 HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL
Sbjct: 241 HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
Query: 301 KFEEMIKKPRGDL 313
KFEEMIKKPRGDL
Sbjct: 301 KFEEMIKKPRGDL 313
>pir||C71243 hypothetical protein PH0205 - Pyrococcus horikoshii
>gi|3256591|dbj|BAA29274.1| (AP000001) 312aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 312
Score = 580 bits (1478), Expect = e-164
Identities = 280/310 (90%), Positives = 296/310 (95%)
Query: 4 DSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVH 63
+ + RALSFFLSPM++MVALFYLIPL+LT+YISFTGMRNWNVERYL DFVG YNY RL H
Sbjct: 3 NDKVRALSFFLSPMLLMVALFYLIPLVLTVYISFTGMRNWNVERYLGDFVGAYNYERLFH 62
Query: 64 MFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPI 123
MFKYDP+FKAV+LTTIVFV ITLIINVLGGLGLAL +FFMSEKP + FRLLWLLPRMSPI
Sbjct: 63 MFKYDPSFKAVVLTTIVFVMITLIINVLGGLGLALGSFFMSEKPSTIFRLLWLLPRMSPI 122
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
AVYSLVWYYFFHGS IGTLNAILM+LG IN+PIPWGQ VPWGAWSIIIFVNGLVGVSFGM
Sbjct: 123 AVYSLVWYYFFHGSEIGTLNAILMKLGFINEPIPWGQIVPWGAWSIIIFVNGLVGVSFGM 182
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
IVFTSALNQIPKELVIAARVDGASAWQIS+RIL PLMKWHFLYVLTWQFLSLLTTYPHLF
Sbjct: 183 IVFTSALNQIPKELVIAARVDGASAWQISKRILLPLMKWHFLYVLTWQFLSLLTTYPHLF 242
Query: 244 LLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
LLVEWDLV+RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGI+GG+ITLKVLKFE
Sbjct: 243 LLVEWDLVNRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIVGGMITLKVLKFE 302
Query: 304 EMIKKPRGDL 313
EMIKKPRGDL
Sbjct: 303 EMIKKPRGDL 312
>pir||A72451 probable lactose transport system permease protein APE2253 -
Aeropyrum pernix (strain K1) >gi|5105954|dbj|BAA81265.1|
(AP000064) 276aa long hypothetical lactose transport
system permease protein [Aeropyrum pernix]
Length = 276
Score = 347 bits (882), Expect = 8e-95
Identities = 167/276 (60%), Positives = 210/276 (75%), Gaps = 2/276 (0%)
Query: 40 MRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALA 99
MRNWNV+ YL D VG YNY LVH KYDP F+ ++TT+VFV +TL++NVLGGL LA+
Sbjct: 1 MRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRNALITTVVFVAVTLVVNVLGGLTLAIL 60
Query: 100 TFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWG 159
TFF+ E+ +RLLWLLPRM+P+AVYSL+WYYFFH +IGTLN IL+ G+I++PI WG
Sbjct: 61 TFFLEERISIHYRLLWLLPRMTPVAVYSLLWYYFFHSDAIGTLNRILLLAGVIDKPINWG 120
Query: 160 Q-NVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFP 218
+P G W I+IFVNGLVGVSFGMIVF SA+ IP E + AARVDGAS I RRI+ P
Sbjct: 121 SYMLPLGTWWILIFVNGLVGVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVP 180
Query: 219 LMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVDRDYGTTLALYVFNTAF-GRGEQDQGL 277
+++WH L+V WQ LSLLTTY H+FLL EW +VDR +G T +L VFN AF GE QGL
Sbjct: 181 MIRWHLLFVTVWQMLSLLTTYTHIFLLYEWGVVDRTWGQTWSLLVFNLAFLPVGELRQGL 240
Query: 278 AAAAAVILSILGIIGGVITLKVLKFEEMIKKPRGDL 313
AAAAA +L ++G I G++TL++L F+ MI +PRGD+
Sbjct: 241 AAAAATVLVVIGAILGLVTLRILGFQRMITRPRGDI 276
>pir||C72378 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980925|gb|AAD35504.1|AE001721_3
(AE001721) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 294
Score = 185 bits (465), Expect = 6e-46
Identities = 113/301 (37%), Positives = 172/301 (56%), Gaps = 24/301 (7%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMR---NWNVERYLHDFVGTYNYYRLVHMFKYDPT 70
LSP++I V +F++IP+ILT+ I+FT M WN FVG N+ + D
Sbjct: 10 LSPLLIFVIIFFVIPVILTVVIAFTDMDYSFTWN-------FVGFQNFKDI----STDFI 58
Query: 71 FKAVILTTIVFVGITL-IINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLV 129
VI T ++ TL + N+ L L+L T +S++ G+ FR LW+LPR++P VY L+
Sbjct: 59 IPRVIANTFIYTFGTLGLFNLGTALLLSLLTTSISDRWGNFFRTLWMLPRLTPSVVYGLL 118
Query: 130 WYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSA 189
W + F + G +N I GL P W + P W +IIF NG +G S GM+VFT+A
Sbjct: 119 WLWMFDPTEYGLVNFIRGLFGL--PPQDWLHSAPM--W-MIIFANGFIGASMGMLVFTAA 173
Query: 190 LNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWD 249
+ IP++ AAR+DGAS + I R+I PL+KWH L+V +Q LSLL ++ ++ ++ +
Sbjct: 174 IKSIPEDYYRAARIDGASWFMIVRKITLPLIKWHLLFVTAYQTLSLLASFEYILIITDGG 233
Query: 250 LVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEEMIKKP 309
V R ALY ++ AF G AA ++IL I+G+I + +K FE +++KP
Sbjct: 234 PVYRT--EVWALYTYHNAFSHFR--FGYGAALSIILVIIGVISAFVYMKFFGFESLMEKP 289
Query: 310 R 310
+
Sbjct: 290 K 290
>pir||D72331 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4981341|gb|AAD35893.1|AE001748_9
(AE001748) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 300
Score = 99.5 bits (244), Expect = 5e-20
Identities = 82/295 (27%), Positives = 144/295 (48%), Gaps = 30/295 (10%)
Query: 12 FFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKY--DP 69
FF++ +++ LF PL+ I ISF Y +D VG Y L + DP
Sbjct: 19 FFITIPTLLMVLFIYYPLVFGIKISF----------YQYDIVGESLYIGLKNYVDLLRDP 68
Query: 70 TFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMSPIAVYSL 128
F +++++ L++ L + + LA G + FR L LP ++PI + ++
Sbjct: 69 LFWNAFKNSLLYL---LVVPPLQLISILLAVLLDRAIRGRNLFRTLIFLPVVTPITIAAI 125
Query: 129 VWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTS 188
W + + G +N +L L +I++PI + + P A I+FV G + M+++ +
Sbjct: 126 TWQWMYREK--GFINFLLQSLHIIDEPIAFLSD-PKIALFAIMFVTMWKGFGYYMVIYLA 182
Query: 189 ALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
L IP+EL+ AARVDGA Q+ ++ PL+K + L+ T ++ L + ++ + +
Sbjct: 183 GLQSIPRELIEAARVDGAKPSQVFFKVTIPLLKPYILFCSTMSSIAALNVFGEIYAMTKG 242
Query: 249 DLVDRDYGTTLALYVFNTAFGRGEQDQ-GLAAAAAVILSILGIIGGVITLKVLKF 302
V T+ ++++N AF E Q G + AAAV+ S + VI +L F
Sbjct: 243 GPVHAT--ETMGIFIYNRAF---EYLQFGYSNAAAVLFSFV-----VIAFSLLNF 287
>emb|CAB72405.1| (AL138978) putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 313
Score = 99.5 bits (244), Expect = 5e-20
Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 30/305 (9%)
Query: 5 SRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM 64
S FRAL +SP ++++ LF P++ + I+FT ++ + FVG N+ R
Sbjct: 32 SLFRALP--VSPAVVLLLLFLAGPIVYCVVIAFTDLQLTGQAQ--ESFVGFDNFTRA--- 84
Query: 65 FKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFM-SEKP-----GSAFRLLWLLP 118
FK D F + T+VF ++ +I LGLALA+ + KP G W+LP
Sbjct: 85 FK-DEAFLNAVWLTLVFTVLSSLIGQ-NTLGLALASLMQRASKPVRTLTGGIVVTAWVLP 142
Query: 119 RMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVG 178
+ V + Y FF GTLNAIL L L +Q W +P A S F N G
Sbjct: 143 EV----VAGFLLYAFFRRE--GTLNAILDWLHLPSQN--WLFTLPILAVS---FANVWRG 191
Query: 179 VSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTT 238
+F M+V+++ALN+IPKE+ AA DGAS W+ I P+++ L L L+
Sbjct: 192 TAFSMLVYSAALNEIPKEVTEAAEADGASGWRRMWHITLPMIRRSIGTNLMLNTLQTLSV 251
Query: 239 YPHLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLK 298
+ ++++ TL L+++ AF G A A++L ++G + V+ L+
Sbjct: 252 FGLIWVMTRGG--PSGNSQTLPLFMYEQAFQNSL--IGYGTAVALLLLLIGSLFSVVYLR 307
Query: 299 VLKFE 303
+L+ E
Sbjct: 308 LLRTE 312
>dbj|BAB05644.1| (AP001513) sugar transport system (permease) [Bacillus halodurans]
Length = 305
Score = 99.5 bits (244), Expect = 5e-20
Identities = 80/290 (27%), Positives = 134/290 (45%), Gaps = 21/290 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+SP I+ A+F L P+I + Y+SF N Y VG N+ + + DPTF
Sbjct: 23 FISPFFILFAVFGLFPMIFSFYLSFFRWDGLNPMSY----VGLANFQLIFN----DPTFF 74
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ I T + + + ++ G+ LA A + FR L LP ++ I ++++
Sbjct: 75 SAIKNTFIIGILGTLPQIIVGILLAFALNSALIRFQHTFRTLVFLPYITSIVAVAIIFGL 134
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLV---GVSFGMIVFTSA 189
F+ G N +L + P+ W Q W + I + +V V + I+F +
Sbjct: 135 VFNNQPFGLANYVLSLFNI--DPVRWSQEY----WPVKIAIATMVFWRWVGYNTIIFLAG 188
Query: 190 LNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWD 249
+ IPKEL AA++DGA+ Q R I P++K L+V+ + L + + +
Sbjct: 189 MQSIPKELYEAAKIDGATIGQQIRLITVPMLKPFILFVVFTATIGSLQLFTEPLIFLGRG 248
Query: 250 LVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
L R+ G T+ Y++ AF G A+AAA++L + I I L +
Sbjct: 249 L--REEGITMVAYLWRDAFVLNA--FGTASAAAIVLFFIIITLTAINLLI 294
>emb|CAB95276.1| (AL359779) putative sugar transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 321
Score = 98.7 bits (242), Expect = 8e-20
Identities = 83/292 (28%), Positives = 130/292 (44%), Gaps = 14/292 (4%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P ++ + LF+ PL+ + +SF F G N+ + D F
Sbjct: 41 FVAPAVVFMLLFFGYPLVRNVVMSFQDYTPKTFFTGEAPFNGADNWSNVFQ----DALFG 96
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKP-GSAFRLLWLLPRMSPIAVYSLVWY 131
+ T+VF +L+ +GLALA FF P R L LLP + P+ V +VW
Sbjct: 97 KALWHTLVFTAGSLLGQFC--IGLALAVFFSRRFPLNGVLRSLILLPWLVPMVVSGIVWR 154
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
+ G LN+ L LG I PW + S+I+ VN +G+ F M++ L
Sbjct: 155 RILDQDT-GVLNSFLDTLG-IGGHTPWLTSPEMALLSVIL-VNIWIGIPFNMVILYGGLQ 211
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
+IPKEL AA +DGASAW+ R + P++K VL F+S + + L +
Sbjct: 212 EIPKELHEAAALDGASAWRTFRSVTLPMLKPVVTVVLVLGFMSTVKILDLILALTDGGPA 271
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
D TL + +F + D G A +L ++ + V L+ + E
Sbjct: 272 DAT--QTLGTLTYQNSF--VQLDFGAGAVVGNVLILISAVFAVFYLRANRTE 319
>dbj|BAB05584.1| (AP001513) sugar transport system (permease) (binding protein
dependent transporter) [Bacillus halodurans]
Length = 309
Score = 97.9 bits (240), Expect = 1e-19
Identities = 85/291 (29%), Positives = 142/291 (48%), Gaps = 21/291 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P II A+F L P++ +IY+SFT +N + G NYYRL F D F+
Sbjct: 33 FIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVW----TGADNYYRL---FVTDDLFR 85
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T + + + I + LG+A+A K + FR + LP +S + +L+W +
Sbjct: 86 KTVFNTF-YAALGIPIGMAVSLGIAVA-LNQKVKGIALFRTAFFLPAVSSVVAITLLWRW 143
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVG-VSFGMIVFTSALN 191
F+ + G LN +L +G I+ P W + W ++II G+ G + MI++ +AL
Sbjct: 144 IFN-ADFGLLNIMLNYVG-IHGP-GWLSDEKWAMPAMII--QGVWGGLGINMILYLAALQ 198
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
+ L AA +DG +AWQ I P + ++L + L + ++ E
Sbjct: 199 GVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEG--- 255
Query: 252 DRDYG-TTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLK 301
+Y TT+ Y+F AF + G A+A A +L I+ +I +I K+ K
Sbjct: 256 GPNYSTTTVVYYLFLNAF--RYMEMGYASAMAWVLGIIILIITIINFKLAK 304
>dbj|BAB06444.1| (AP001516) lactose transport system (permease) [Bacillus
halodurans]
Length = 290
Score = 96.7 bits (237), Expect = 3e-19
Identities = 68/287 (23%), Positives = 139/287 (47%), Gaps = 15/287 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+S + + +FY P++ + +SF N+E +VG NY RL + DPTF
Sbjct: 14 FISLAVAAITIFYFYPMLQALLLSFQSGMGANLE-----YVGLANYIRLFN----DPTFL 64
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T++++ I + + ++ L ++ + K S FR+ LP ++ + YS+++ Y
Sbjct: 65 TALKNTLLYLLIQVPLMIVLALIFSVLLNDATLKFRSFFRIAIFLPCVTSLVAYSVIFKY 124
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F G +N L+ + LI+ PI W + W +II+ + + MI + S+L
Sbjct: 125 LF--GMDGLVNQFLLNVSLISAPIQWLSDPFWAKVTIIVAITWR-WTGYNMIFYLSSLQN 181
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
+ + + AA++DGA+ +Q +I P++K L+ + L + + +
Sbjct: 182 VDQSIYEAAKIDGATPFQQFTKITIPMLKPIILFTSITSTIGTLQIFDEVVNITNGG--P 239
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
+ +++ Y++N +F D G A+ + ++ +L I+ ++ KV
Sbjct: 240 GNATLSISQYIYNLSF-EYTPDFGYASTVSYVIVMLVIVLSIVQFKV 285
>gb|AAC44394.1| (U43526) ORF-3 [Streptococcus pneumoniae]
Length = 294
Score = 94.8 bits (232), Expect = 1e-18
Identities = 76/275 (27%), Positives = 136/275 (48%), Gaps = 14/275 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+ P +I+V L ++ P +I+ SFT N ++ + FVG NY ++ DP F
Sbjct: 12 FVLPAMIIVGLLFVYPFFSSIFYSFT---NKHLIMPNYKFVGLANYKAVLS----DPNFF 64
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+I + +L+ VL G LALA + +R L ++P P V + W +
Sbjct: 65 NAFFNSIKWTIFSLVGQVLVGFVLALALHRVRHFK-KLYRTLLIVPWAFPTIVIAFSWQW 123
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
+G G L ++++LGL+ + + W A+ ++F+N G M+ SAL
Sbjct: 124 ILNGV-YGYLPNLIVKLGLMEHTPAFLTDSTW-AFLCLVFINIWFGAPMIMVNVLSALQT 181
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
+P+E AA++DGAS+WQ+ + I+FP +K ++ + + + + ++L+ +
Sbjct: 182 VPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPAN 241
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSI 287
TTL ++ +N G G + G A+A V+L I
Sbjct: 242 AT--TTLPIFAYN--LGWGTKLLGRASAVTVLLFI 272
>dbj|BAB05944.1| (AP001514) sugar transport system (permease) [Bacillus halodurans]
Length = 304
Score = 94.8 bits (232), Expect = 1e-18
Identities = 84/302 (27%), Positives = 142/302 (46%), Gaps = 18/302 (5%)
Query: 5 SRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM 64
S+ +LS+ P ++ V F + P + I ISFT NWN D+VG Y R+
Sbjct: 18 SKRSSLSWMYLPAVLAVVTFIVYPFLNGIRISFT---NWNGFSQSFDWVGFAQYERMFT- 73
Query: 65 FKYDPTFKAVILTTIVF-VGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPI 123
DPT V+ T+++ +G TL+ N++G LG AL S + + R + LP +
Sbjct: 74 ---DPTTWLVVKNTLLYGIGSTLLQNLIG-LGYALL-LNQSIRMRTITRTIIYLPVIISP 128
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
V +WY+FF G +N L G QP+ N W +I+FVN V M
Sbjct: 129 LVMGYIWYFFFAYQG-GAMNDALTFFGF--QPLNILGNPAVNPW-LIVFVNTYQFVGIAM 184
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
I++ + L I K+ AA++DGAS++Q + I PL+ + + L + +
Sbjct: 185 IIYLAGLQSISKDYYEAAQLDGASSFQQFKNITLPLLMPSITINVVLNIIGGLKLFDVII 244
Query: 244 LLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
L + +++ ++++ F R QD G AA V ++ + ++ ++ L K +
Sbjct: 245 ALTGGG--PGNASQSMSTFMYHLYFSR--QDAGYAATQGVFMAFIILVLSILALVYFKRK 300
Query: 304 EM 305
E+
Sbjct: 301 EV 302
>pir||D82557 ABC transporter sugar permease XF2447 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107640|gb|AAF85246.1|AE004053_9 (AE004053) ABC
transporter sugar permease [Xylella fastidiosa]
Length = 293
Score = 94.0 bits (230), Expect = 2e-18
Identities = 73/286 (25%), Positives = 132/286 (45%), Gaps = 15/286 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLH-DFVGTYNYYRLVHMFKYDPTF 71
F P ++++ +F+ +P+++ + +S T + + ++ FVG NY L+H P F
Sbjct: 11 FAGPAVLVIGMFFGVPVLMALVLSLTDFDLYALANPMYLRFVGLDNYLELLHT----PLF 66
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWY 131
+ T FV + + +++ LG AL + + FR + P ++ + +L+W
Sbjct: 67 WKALWNTTYFVLLGMPMSITVSLGAALLLNSRAARFKGLFRTVLFAPVVTTLVAVALIWR 126
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
Y FH G +N +L +G+ PI W + P A +I+ + M++F + L
Sbjct: 127 YLFH-LKYGVVNWLLNCVGI--HPIDWLGD-PHLAMPMIMLFAVWKNFGYNMVIFLAGLQ 182
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
IP++L AAR+DGAS WQ I P++ + V ++T + L E ++
Sbjct: 183 AIPQDLYEAARIDGASKWQQFLHITLPMLGPVLMVV------GIITVSGYFQLFAEPYVM 236
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITL 297
R + V F G + L A+AV + ++ GV TL
Sbjct: 237 TRGDPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLVVLGVTTL 282
>dbj|BAB07408.1| (AP001519) sugar transport system (permease) [Bacillus halodurans]
Length = 300
Score = 92.4 bits (226), Expect = 6e-18
Identities = 77/294 (26%), Positives = 142/294 (48%), Gaps = 15/294 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
FL+P ++ + +F L+P++ IY+SF + N+ +FVG NY R+ ++ +
Sbjct: 20 FLTPALVTIGVFILLPILYAIYLSFQKV---NLLAGFSEFVGFNNYARITDDYRAGIALR 76
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAF-RLLWLLPRMSPIAVYSLVWY 131
T +V I + + L L LA ++ G+ F R+++ LP ++ AV +L++
Sbjct: 77 ----NTAFYVAIVVPTQTI--LALILAACLNAKIKGTNFFRVVFFLPTLTSSAVLALIFM 130
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
+ ++ + G +N +L LGL P P A I+ +N F M+++ +AL
Sbjct: 131 FMYNNQN-GLVNQVLASLGL---PTYNWLGDPSVALLAIMIMNIWATAPFYMVIYLAALK 186
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
IP L AA +DGAS Q R I P+++ +V+ + + ++
Sbjct: 187 DIPASLYEAADLDGASTIQKFRYITVPMLRPITSFVVIMGIIGTFQLFDQSYIFSGGSGG 246
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEEM 305
+ T+ L ++ AF +Q G AAA A +L+++ +I +I K K E++
Sbjct: 247 PDNSTLTIVLLIYQYAFQSYDQ-MGYAAALAFLLAVIILIATLIQRKFQKNEQV 299
>pir||G75206 maltodextrin transport system permease protein PAB0120 - Pyrococcus
abyssi (strain Orsay) >gi|5457611|emb|CAB49102.1|
(AJ248283) MALTODEXTRIN TRANSPORT SYSTEM PERMEASE
PROTEIN [Pyrococcus abyssi]
Length = 302
Score = 92.4 bits (226), Expect = 6e-18
Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 19/298 (6%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMR--NWNVERY-LHDFVGTYNYYRLVHMFKYDPTFK 72
P I F L P+I +IY++FT + N+ VE+ FVG N+ ++ D F+
Sbjct: 19 PGITAFLFFNLWPIIYSIYLAFTNAQLGNFPVEKAGTLKFVGLENFKWILS----DEKFR 74
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T +FV ++ + VL G+GL+L + +R L ++P P+ VW +
Sbjct: 75 SAFKWTWIFVATSVTLKVLVGIGLSLLYNSKYVRGKMIYRALLIIPWALPLLFSITVWKF 134
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F G +N +L +G+ N P W N P+ A+ + + + F M V T+AL
Sbjct: 135 MFD-PVFGPINQLLKSIGISNPP-NW-INDPFWAFLALNIIEVWLAYPFMMTVITAALQS 191
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMK--WHFLYVLTWQFLSLLTTYPHLFLLVEWDL 250
+P L+ AA +DGA+ WQ R ++ P + F +LT P+L+ L
Sbjct: 192 VPDTLIEAAIIDGANYWQRFRHVILPTVSKPIAFATILTSAASFQYFMVPYLY---NAGL 248
Query: 251 VDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEEMIKK 308
+ + + LY F AFG G A A VI +++ I I +K+ + +E K+
Sbjct: 249 FEDKF---ILLYGFRKAFG-ATPHYGRATAVMVIATMVLAIYMYINVKITRLQEGAKE 302
>emb|CAB59589.1| (AL132662) putative sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 302
Score = 90.9 bits (222), Expect = 2e-17
Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 32/304 (10%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKA 73
++P ++ + L PL + ISF R + DFVG NY L+ DP F
Sbjct: 17 IAPAVLGMLYLLLYPLARAVLISFQDFRLRQLILGDADFVGLRNYRTLLG----DPEFWE 72
Query: 74 VILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWL----LPRMSPIAVYSLV 129
V+ T VF+ + ++ ++ L+ M+E+ G A R + L L P+ + V
Sbjct: 73 VVRRTFVFMAVGVVAIMV----LSTLVALMTERLGRAARTVVLSSLVLVWAVPVVAATTV 128
Query: 130 WYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPW-----GAWSIIIFVNGLVGVSFGMI 184
+ + FH S G +N L LG + + PW A+ I++ + V F I
Sbjct: 129 FQWLFH-SEFGIVNETLTGLGFESY-----EGYPWFAHGGAAFGIVVVLIVWQSVPFAAI 182
Query: 185 VFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFL 244
SAL +P EL +AR+DGA A ++ R + FPL++ F+ VL+ + + + +++
Sbjct: 183 TLYSALVTVPAELYESARMDGAGAARVFRSVTFPLIRPIFMLVLSLEVIWTFKAFVQIWV 242
Query: 245 LVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
+ + T L +Y TA D G AA+ +L + G++ VL F +
Sbjct: 243 MTRGG--PGEATTILPVYAVQTALAGQRYDLGSAASMLTVLLMSGVL-------VLYFRQ 293
Query: 305 MIKK 308
+ ++
Sbjct: 294 LFRQ 297
>sp|P29823|LACF_AGRRD LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN LACF
>gi|72502|pir||MMAGCF membrane protein lacF -
Agrobacterium radiobacter >gi|38969|emb|CAA47162.1|
(X66596) lacF [Agrobacterium radiobacter]
Length = 298
Score = 90.5 bits (221), Expect = 2e-17
Identities = 68/279 (24%), Positives = 128/279 (45%), Gaps = 12/279 (4%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P I ++++F L P++ ++ +S R ++ F GT N RL + DP F
Sbjct: 20 FVAPAIALISVFMLYPILRSLVLSLYTGRGMMLK-----FSGTGNLVRLWN----DPVFW 70
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T++F + + I + L LA + FR + LP +S + YS+++
Sbjct: 71 QALQNTVIFFVVQVPIMITMALILAAMLNNPKLRYSGLFRTMIFLPCVSSLVAYSILFKS 130
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F S G +N L+ +G+I +PI W + W III + + MI + +AL
Sbjct: 131 MF--SLDGVVNNTLLAIGIIGEPIGWLTDPFWAKVLIIIAITWR-WTGYNMIFYLAALQN 187
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
I + + AA++DG +W + P++K L+ + L + ++ E
Sbjct: 188 IDRSIYEAAKIDGVPSWGRFAFLTIPMLKPVILFTTITSTIGTLQLFDEVYNFTEGTGGP 247
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGII 291
+ TL+LY++N F A + VI+ ++ ++
Sbjct: 248 ANSTLTLSLYIYNLTFRFMPSFSYAATVSYVIVLMVAVL 286
>emb|CAA91221.1| (Z56279) integral membrane protein [Thermoanaerobacter brockii]
Length = 303
Score = 90.5 bits (221), Expect = 2e-17
Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 23/299 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F P I++ +F L PLI T Y+S T M N + FVG N+ +L F + K
Sbjct: 21 FTLPFIVIFLVFNLYPLIYTFYLSLTDMTLMNSS---YHFVGLANFKQL---FSDNYFLK 74
Query: 73 AVILTTIVFVGITLIINVLGGLGLA--LATFFMSEKPGSAFRLLW----LLPR-MSPIAV 125
+VI T ++ +IN + L +A LA +F++ + F LW LP + P+AV
Sbjct: 75 SVINTWKIW-----LINFIPQLTIAMLLAIWFVNNRLKIKFIGLWRTIYYLPNILMPVAV 129
Query: 126 YSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIV 185
+L + +F S G +N I +R G++ + + ++ W I+ F+ + +I+
Sbjct: 130 AALFYNFF---SLYGPVNQIAVRTGILKEAFDFFRSTTW-TQLIVAFIQWWMWYGVTIIL 185
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
+ L+ I +A VDGA++WQ+ +I PL+K +YVL + + +LL
Sbjct: 186 LMAGLSSISPSYYESALVDGANSWQMFTKITLPLLKPVLIYVLVTSLSGGMQMFDIPYLL 245
Query: 246 VEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
+ T+++ ++ F G+ G AA+ V++ ++ I I + +LK E
Sbjct: 246 TDGTGSPDGAIRTMSVLMY-MKFSSGDGYIGAAASVGVMIFLITAIAAFIIINLLKERE 303
>emb|CAB65652.1| (AJ252161) putative maltose transport membrane protein
[Alicyclobacillus acidocaldarius]
Length = 321
Score = 90.1 bits (220), Expect = 3e-17
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYL-HDFVGTYNYYRLVHMFKYDPT- 70
+LSP ++ + + ++P+ TIYISFT N+N +L + FVG NY L++ +DP
Sbjct: 27 YLSPALVTICVLSILPIFYTIYISFT---NFNQMHFLSYQFVGLKNYEELLN--PHDPLS 81
Query: 71 --FKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSL 128
F + T+V+ T + L GL LA+ + + +R L ++P P + L
Sbjct: 82 NLFLPTFIWTLVYALCTTALAYLVGLFLAVLLNNKHMRERTLYRTLLIVPWAVPNLISML 141
Query: 129 VWYYFFHGSSIGTLNAILMRLGLINQP-IPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
W + G +NA+L G+ P IPW + W ++I+ VN G + M V
Sbjct: 142 AWQGLLN-DQYGQINALLH--GVFGLPRIPWLTSALWARIAVIM-VNVWAGFPYMMTVCL 197
Query: 188 SALNQIPKELVIAARVDGASAWQISRRILFP 218
AL IP + AA +DGA+ WQ+ R + P
Sbjct: 198 GALQSIPTDQYEAAEIDGANWWQVFRYVTMP 228
>dbj|BAB04796.1| (AP001510) glycerol-3-phosphate ABC transporter (permease)
[Bacillus halodurans]
Length = 315
Score = 89.3 bits (218), Expect = 5e-17
Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 35/311 (11%)
Query: 2 KFDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHD-------FVG 54
K + R + +L P +++ ++F P+I T+Y+SF +L D FVG
Sbjct: 26 KRTANVRIAALYLFPSLLLFSIFLFYPMIRTVYLSF----------FLTDAQGNAALFVG 75
Query: 55 TYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLL 114
NY +++F+ DP F+ T +FV T+ VL L LAL G FR +
Sbjct: 76 LENY---LYLFQSDP-FRKSASATFLFVLYTVPTGVLLALFLALIANEKLRGIG-LFRTI 130
Query: 115 WLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVN 174
+ +A +++W + FH ++G LN+IL +G+ IPW + W SI I
Sbjct: 131 FSSTMGMSVAASAVIWLFLFH-PTVGILNSILGFIGI--DSIPWLLDPKWALISIAITTI 187
Query: 175 GLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLS 234
+ F +V L I + L +AR+DGA + RI P++ +++T F+
Sbjct: 188 WM-NTGFSFLVLLGGLQNIDQHLYESARIDGAGYFYQLFRITVPMLSPTLFFIITITFIH 246
Query: 235 LLTTYPHLFLLVEWDLVDRDYGTTLALY-VFNTAFGRGEQDQGLAAAAAVILSILGIIGG 293
++ + +L + T L +Y ++ AF G A+A AVIL +L ++
Sbjct: 247 SFQSFGQVDILTGGGPAE---ATNLIVYSIYQDAF--INYQFGTASAQAVILFLLVLL-- 299
Query: 294 VITLKVLKFEE 304
+TL KF E
Sbjct: 300 -LTLVQFKFGE 309
>pir||T37130 probable transport system integral membrane protein - Streptomyces
coelicolor >gi|5738807|emb|CAB52981.1| (AL109950)
putative integral membrane permease [Streptomyces
coelicolor A3(2)]
Length = 319
Score = 88.9 bits (217), Expect = 7e-17
Identities = 74/286 (25%), Positives = 134/286 (45%), Gaps = 19/286 (6%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P +++VALF L P + TIY SF + ++++ +F DP
Sbjct: 45 FMAPAVLLVALFLLAPFVWTIYRSF----------FSDTRTSPFSWFDNYSLFASDPALS 94
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
I T+++V T+ + + LGLA+A + + RL +LP + ++VW +
Sbjct: 95 RSIQNTLMWVVGTVALPFV--LGLAIACMTNAGRFSRLARLCVVLPYALSGSAVAVVWNF 152
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
++ G +N +L LGL + W P G ++I N +I+F L
Sbjct: 153 ML--TTDGAVNQVLTALGLDSLAQGWLLTWP-GNTVVMILANAWQATGVAVILFLVGLQS 209
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
IP E + A +DGAS WQ R I+ P ++ + V+ ++ L ++ +++L +
Sbjct: 210 IPPETLEAGALDGASGWQQFRHIVLPQLRPVSIIVIGMSLVNGLKSFDLIWVLTQGG--P 267
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLK 298
TLA+ ++N F E G AA AV+L+++ + + L+
Sbjct: 268 GRATETLAVSMYNETF--LELRPGAGAAIAVVLTVIVLAASWLYLR 311
>dbj|BAB18103.1| (AB034969) cyclomaltodextrin transport membrane protein
[Thermococcus sp. B1001]
Length = 231
Score = 88.9 bits (217), Expect = 7e-17
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 12/222 (5%)
Query: 4 DSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMR--NWNVERYLHD---FVGTYNY 58
D + A + P +I F + P++ +IYI+FT + N+ ++ + FVG N+
Sbjct: 2 DKKTIAALALILPGMIAFLFFNIYPILYSIYIAFTNAKLGNFPIQAPTAEPLRFVGLENF 61
Query: 59 YRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLP 118
+ DP F++ + T VFV ++ + V+ G+ L++ K +R L ++P
Sbjct: 62 RWALS----DPKFRSAFVWTWVFVATSVTLKVVVGILLSVLYNNKYVKGKFFYRALLIIP 117
Query: 119 RMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVG 178
P+ +VW + F +G +N +L LG+ N P W +V WG ++ I + +
Sbjct: 118 WALPLLFSVMVWRFMFD-PVVGPINIMLRDLGITNPP-DWMTSVTWGFVALNI-IEVWLA 174
Query: 179 VSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLM 220
F M V TSAL +P L+ AA +DGA+ WQ +++ P++
Sbjct: 175 YPFMMTVITSALQSVPDTLIEAAIIDGANYWQRLTKVVIPIV 216
>pir||A72283 maltose ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4981755|gb|AAD36278.1|AE001777_4
(AE001777) maltose ABC transporter, permease protein
[Thermotoga maritima]
Length = 577
Score = 88.5 bits (216), Expect = 9e-17
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 11/251 (4%)
Query: 51 DFVGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSA 110
DFVG N+ R+V K F + L T V+ +++++++ GL AL K +
Sbjct: 315 DFVGWKNFLRIVKDPKVSGPFFRIFLWTFVWAVLSVVLSLAVGLPFALVLNNPRLKGRNL 374
Query: 111 FRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRL-GLINQPIPWGQNVPWGAWSI 169
+R L ++P P+ + +LVW S G +N L+ L GL +PI W N P+ A
Sbjct: 375 YRTLLIIPWAIPVFISALVWRNGLLNESYGVINKFLLPLFGL--EPIKW-FNDPFWARVG 431
Query: 170 IIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLT 229
++ VN + + M + AL IP EL A +DGA ++ I FPL+ +L
Sbjct: 432 VLLVNVWLTFPYMMTISLGALQSIPPELYEVAAIDGAGRFRRFVHITFPLLMTIIAPLLV 491
Query: 230 WQFLSLLTTYPHLFLL------VEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAV 283
F + ++L+ + Y L YV+ AF G Q Q A+A+
Sbjct: 492 SSFAFSFNNFTIIYLITGGGPPIPNSTTPTGYTDILISYVYKLAF-EGGQGQDFGFASAI 550
Query: 284 ILSILGIIGGV 294
+ I ++GG+
Sbjct: 551 SILIFFLVGGI 561
>gb|AAG09707.1|AF218837_2 (AF218837) unknown [Pasteurella multocida]
Length = 294
Score = 87.8 bits (214), Expect = 2e-16
Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 14/288 (4%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+ P I++V++ ++ P + +I+ SFT N N+ + FVG NY ++ DP F
Sbjct: 13 FVLPAILVVSVLFIYPFLSSIFYSFT---NKNLIMPHYSFVGLANYRAVLS----DPNFW 65
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
++ + +L VL G LALA + +++L ++P P V + W +
Sbjct: 66 MSFFNSLKWTIFSLTGQVLVGFFLALALNRVKHFKW-LYKILLIIPWAFPTIVIAFSWQW 124
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
+G G L +L++LGL+ + + W A+ ++F+N G M+ SAL
Sbjct: 125 ILNGV-YGYLPNMLVQLGLMEIAPNFLSDRTW-AFVCLVFINIWFGAPMIMVNVLSALQT 182
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
+P + AA++DGA+AWQI R I P +K ++ + + + + ++L+ +
Sbjct: 183 VPTDQYEAAKIDGANAWQIFRYITLPHIKVVVGLLVVLRTVWVFNNFDIIYLITGGGPAN 242
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
T+ L +F G G + G ++A V+L I + I K++
Sbjct: 243 ----ATMTLPIFAYDMGWGSKLLGRSSAVTVLLFIFLLSVYFIYFKII 286
>sp|O58968|YC15_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1215
>gi|7442715|pir||A71065 probable sugar-binding transport
system permease protein - Pyrococcus horikoshii
>gi|3257632|dbj|BAA30315.1| (AP000005) 292aa long
hypothetical sugar-binding transport system permease
protein [Pyrococcus horikoshii]
Length = 292
Score = 87.4 bits (213), Expect = 2e-16
Identities = 75/282 (26%), Positives = 128/282 (44%), Gaps = 18/282 (6%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
FL P +I++ +F ++ IYISFT +W + FVG Y +L+H DP F
Sbjct: 13 FLIPALILIGIFVYFAVVWNIYISFT---DWRGLIPSYHFVGLAQYKQLIH----DPIFW 65
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ ++ + + + ++L GL LA+ M + S FR +++LP V + +W +
Sbjct: 66 TSLRNNLLLILLFVPGSLLLGLFLAI-LLDMKVRFESGFRTIYVLPFALSFVVTATLWAW 124
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
+ SS G LN + +LGL W + + III + + MI++ + +
Sbjct: 125 MYDPSS-GVLNVLFDKLGLDFLKSGWITDPKIAMYCIIIALIWQFS-GYTMIIYLAGIRS 182
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
IP E A +DGAS WQ+ R I+ P + L + L + + W L
Sbjct: 183 IPIEQYEGALIDGASTWQLYRYIVIPQLTKPTLSAFVVLMVFSLKAFDFI-----WVLTR 237
Query: 253 RDYGTT---LALYVFNTAFGRGEQDQGLAAAAAVILSILGII 291
GT+ LA+ ++ F + G A A ++L L ++
Sbjct: 238 GGPGTSTFILAIEMYKETFAKTNFAYGAAIATILLLMALVVV 279
>emb|CAB55715.1| (AL117387) putative binding protein dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 303
Score = 87.4 bits (213), Expect = 2e-16
Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 18/283 (6%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKAVI 75
P +++ ++P+I IY SFT + + +F+G NY MF D ++
Sbjct: 24 PAVLVYVALLVVPVIYAIYYSFTEYNGF--PHRVPEFIGLDNYRT---MFGSDDITGTMV 78
Query: 76 LTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFH 135
+T +V V + +N L LGLAL + + + R++ P + V +W
Sbjct: 79 VTAVVAVVGAVAVN-LAALGLALL-LQRTNRFNTFGRVVMFYPHVLSALVVGFLWQAILG 136
Query: 136 GSSIGTLNAILMRLGLINQPIPWGQNVPWGAWS-IIIFVNGLVGVSFGMIVFTSALNQIP 194
G +N +L + G +P+ + W WS I++ V L GV +I++ + L +P
Sbjct: 137 PQ--GVVNTMLEKAG--TDSLPFLSDPDWALWSMILVIVWSLFGVQ--LILYLAGLQAVP 190
Query: 195 KELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVDRD 254
+L+ AAR+DGAS WQ R + +P + + +SLL TY + L
Sbjct: 191 ADLLEAARIDGASRWQTFRAVTWPSLASTVTVAVITSGISLLKTYDVVVSLTG----GGP 246
Query: 255 YGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITL 297
G+T L A ++D G+A+A AV+L + + + L
Sbjct: 247 AGSTKTLAYSILAVSFPQRDIGVASAQAVLLIVAAAVLAITVL 289
>pir||B69588 L-arabinose transport (integral membrane protein) araP - Bacillus
subtilis >gi|1770020|emb|CAA99593.1| (Z75208)
hypothetical protein [Bacillus subtilis]
>gi|2635339|emb|CAB14834.1| (Z99118) integral membrane
protein [Bacillus subtilis]
Length = 313
Score = 87.0 bits (212), Expect = 3e-16
Identities = 78/299 (26%), Positives = 137/299 (45%), Gaps = 20/299 (6%)
Query: 3 FDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLV 62
F S+ A F +P ++ +F+L P+I +SF + V FVG NY L
Sbjct: 25 FYSKKAAPYLFTAPFVLSFLVFFLYPIISVFIMSFQRILPGEVS-----FVGLSNYTAL- 78
Query: 63 HMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSE--KPGSAFRLLWLLPRM 120
+PTF + T+ + TLI VL + L LA F S+ K + F+ +P +
Sbjct: 79 ----NNPTFYTALWNTLEYTFWTLI--VLIPVPLLLAIFLNSKLVKFRNIFKSALFIPAL 132
Query: 121 SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS 180
+ V +++ F N+IL++LG P W N G + +++ + +
Sbjct: 133 TSTIVAGIIFRLIFGEMETSLANSILLKLGF--SPQNWMNNEHTGMFLMVLLASWR-WMG 189
Query: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
++ F + L +PKEL AA +DGA+ + I P +K +YVLT + +
Sbjct: 190 INILYFLAGLQNVPKELYEAADIDGANTMKKFLHITLPFLKPVTVYVLTISIIGGFRMFE 249
Query: 241 HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
++L + + + G TL Y++ G + G AA ++L I+ ++ +I+LK+
Sbjct: 250 ESYVLWQ-NNSPGNIGLTLVGYLYQQ--GLAYNEMGYGAAIGIVLLIVILVVSLISLKL 305
>emb|CAA61935.1| (X89810) putative integral membrane protein [Bacillus subtilis]
Length = 313
Score = 87.0 bits (212), Expect = 3e-16
Identities = 78/299 (26%), Positives = 137/299 (45%), Gaps = 20/299 (6%)
Query: 3 FDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLV 62
F S+ A F +P ++ +F+L P+I +SF + V FVG NY L
Sbjct: 25 FYSKKAAPYLFTAPFVLSFLVFFLYPIISVFIMSFQRILPGEVS-----FVGLSNYTAL- 78
Query: 63 HMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSE--KPGSAFRLLWLLPRM 120
+PTF + T+ + TLI VL + L LA F S+ K + F+ +P +
Sbjct: 79 ----NNPTFYTALWNTLEYTFWTLI--VLIPVPLLLAIFLNSKLVKFRNIFKSALFIPAL 132
Query: 121 SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS 180
+ V +++ F N+IL++LG P W N G + +++ + +
Sbjct: 133 TSTIVAGIIFRLIFGEMETSLANSILLKLGF--SPQNWMNNEHTGMFLMVLLASWK-WMG 189
Query: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
++ F + L +PKEL AA +DGA+ + I P +K +YVLT + +
Sbjct: 190 INILYFLAGLQNVPKELYEAADIDGANTMKKFLHITLPFLKPVTVYVLTISIIGGFRMFE 249
Query: 241 HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
++L + + + G TL Y++ G + G AA ++L I+ ++ +I+LK+
Sbjct: 250 ESYVLWQ-NNSPGNIGLTLVGYLYQQ--GLAYNEMGYGAAIGIVLLIVILVVSLISLKL 305
>emb|CAB11326.1| (Z98604) possible sugar transport protein [Mycobacterium leprae]
Length = 319
Score = 87.0 bits (212), Expect = 3e-16
Identities = 88/304 (28%), Positives = 144/304 (46%), Gaps = 30/304 (9%)
Query: 5 SRFRALS--FFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLV 62
SR RA + F++P + V++F L PL ++Y+SF + W++ FVG N+ L
Sbjct: 24 SRRRAWAGRMFIAPNLASVSVFMLFPLGFSLYMSF---QKWDMFTP-PVFVGLANFQNL- 78
Query: 63 HMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMS 121
F DP F + ++VF T+I VL + L +A + G FR + LP
Sbjct: 79 --FTSDPLFLIALCNSVVFTVGTVIPTVL--ISLVVAGVLNQKVKGIGIFRTIVFLPLAI 134
Query: 122 PIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSF 181
V ++VW + F+ + G LN +L +G+ PIPW N W S+ I V+ V F
Sbjct: 135 SSVVMAVVWQFIFNTHN-GLLNIMLGWIGI--GPIPWLVNPGWAMASLCI-VSVWRSVPF 190
Query: 182 GMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPH 241
+V +A+ ++PK + AA++DGA + I P ++ +V+ F+ T+
Sbjct: 191 ATVVLLAAMQEVPKTVYEAAKIDGAGEIRQFISITVPFIRGAISFVVVISFIHAFQTFDL 250
Query: 242 LFLLVEWDLVDRDYGTTLALYV-----FNTAFGRGEQDQGLAAAAAVILSILGIIGGVIT 296
+++ L + G LA YV F AF E A+A+ L I+ +I
Sbjct: 251 VYV-----LNGPNGGPELATYVLGIMLFQHAFSFLE----FGYASALALVTFAILLVLIV 301
Query: 297 LKVL 300
L++L
Sbjct: 302 LQLL 305
>pir||H75503 maltose ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458257|gb|AAF10142.1|AE001914_4
(AE001914) maltose ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 468
Score = 86.6 bits (211), Expect = 4e-16
Identities = 73/256 (28%), Positives = 113/256 (43%), Gaps = 13/256 (5%)
Query: 50 HDFVGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGS 109
+ +VG N+ + K V + T+ F T+I+N L GL L + + K +
Sbjct: 209 YQYVGLANFQEI--FAKASRALWPVFVWTVAFAFFTVILNALAGLILGILLYNKRLKGRN 266
Query: 110 AFRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSI 169
+R L LP P + +W + G +N L LGL +PW + W SI
Sbjct: 267 IYRTLLFLPWAIPAVISVQMWKALLD-QNFGIVNKTLGLLGLF--AVPWLNDPLWAKISI 323
Query: 170 IIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLT 229
+ FVN +G + M SAL I ++L AA +DGAS WQ I PL++ F +L
Sbjct: 324 L-FVNLWLGFPYMMTATISALATINEDLYEAASIDGASRWQQITNITLPLLRQSFTPILL 382
Query: 230 WQFLSLLTTYPHLFLLVEWDLVDRDYGTT------LALYVFNTAF-GRGEQDQGLAAAAA 282
F + ++LL +T L + +NTAF G Q+ LA+A A
Sbjct: 383 STFAFNFNNFGIIYLLTAGGPAQEGRESTAQSTDILLSWGYNTAFASSGGQNYALASAIA 442
Query: 283 VILSILGIIGGVITLK 298
+I+ L + ++ K
Sbjct: 443 LIIFFLTLAISLVNFK 458
>pir||S75971 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001331|dbj|BAA10818.1| (D64006) membrane bound
sugar transport protein [Synechocystis sp.]
Length = 279
Score = 86.2 bits (210), Expect = 5e-16
Identities = 72/301 (23%), Positives = 140/301 (45%), Gaps = 29/301 (9%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
+++P ++ ++ + ++P + T+Y+SF R+ N FVG NY F+
Sbjct: 2 YVTPALLFLSAYLILPTLETVYLSFFDGRSRN-------FVGLKNYVFAFTDHTMLVAFR 54
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+L ++ GI++ LGL +A + + + + LP S++W +
Sbjct: 55 NNLLWLVLVTGISV------SLGLIIAVLVDKVRYEAIAKSIIFLPMAISFVGASVIWKF 108
Query: 133 FFH-----GSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
+ IG LNAI+ LG P+ W +++I + L F M++ +
Sbjct: 109 VYAYRPAGAEQIGLLNAIVTSLGFA--PVGWLVERSVNNFALIAIMIWLY-TGFCMVILS 165
Query: 188 SALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE 247
+A+ IP +++ AAR+DGA++WQI RI P+++ L V T + +L + +F++
Sbjct: 166 AAVKGIPADVIEAARIDGANSWQIFWRITIPMIRSTLLVVSTTMVILVLKVFDIVFVMTG 225
Query: 248 WDLVDRDYGTTLALYVFN-TAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEEMI 306
+ + + +FN FGRG + AVIL +L + + ++ K +E +
Sbjct: 226 GNQGTEVIASLMIKEMFNYRNFGRG-------STIAVILLLLIVPVMITNIRRFKAQEKL 278
Query: 307 K 307
+
Sbjct: 279 R 279
>sp|O31519|YESP_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN YESP
>gi|7442702|pir||G69796 lactose permease homolog yesP -
Bacillus subtilis >gi|2633011|emb|CAB12517.1| (Z99107)
similar to lactose permease [Bacillus subtilis]
Length = 309
Score = 85.8 bits (209), Expect = 6e-16
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 27/294 (9%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+SP II F +IP+ ++++SFT + ++ +G N+ MF D +
Sbjct: 25 FISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKW----IGLDNFKE---MFTGDEKYW 77
Query: 73 AVILTTIVFV--GITLIINVLGGLGLALATFFMSEKPGSA-FRLLWLLPRM--SPIAVYS 127
+ T +V G+ L + G L +A + G+A +R L+ LP + +AV +
Sbjct: 78 QSLKVTFTYVLAGVPLRL----GFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSVAV-A 132
Query: 128 LVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
++W F G +NA+L +G I+Q I W QN W++I+ G S M++F
Sbjct: 133 IMWRNIFGND--GVINALLFFVG-IDQKILWYQNPTSALWTLILLSVWQFGSS--MLIFL 187
Query: 188 SALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE 247
+ L IP + AA VDGA+ Q +I P++ + L Q +S T+ +++ +
Sbjct: 188 AGLKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISK 247
Query: 248 WDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLK 301
+ D +LY+F AF + G A+A A ++ +I G+ITL + K
Sbjct: 248 GEGGPLDGTLLYSLYLFQRAFNYFQ--MGYASAMAWVML---VIVGLITLILFK 296
>emb|CAB59596.1| (AL132662) probable sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 316
Score = 85.8 bits (209), Expect = 6e-16
Identities = 65/285 (22%), Positives = 134/285 (46%), Gaps = 16/285 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+SP +++V ++P++ ++ +SF R+ VG NY L DP F
Sbjct: 34 FVSPAVLIVLGLSIVPVVWSLLLSFQASDLVTPSRW----VGLDNYRALAQ----DPNFS 85
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T+++ + + +++L GL LA+ G +R L +P + ++ +
Sbjct: 86 QAVRNTLLYTVLYVPLSLLFGLALAMVLNRRIRFVG-LYRTLIFVPFVLSATAQGVL-FS 143
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F G N++L RLG+ +Q + P A +++ + G F ++V+ +AL
Sbjct: 144 FILDPEFGAANSVLHRLGVSSQGF---LSDPSQALLVLVAITLWSGTGFCVVVYLAALQD 200
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
+P+ L+ AAR+DGA + R + P + ++++ WQ + L + +++ + +
Sbjct: 201 VPQSLIEAARLDGAGRRHLLRHVTMPTLTPVTVFLVLWQAIQSLQVFDLVYVTTKGGPLG 260
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITL 297
T + +++ AF G A+AA V+ LG++ G + +
Sbjct: 261 ST--TVIVYFIWEQAFKNATAGYG-ASAAYVLAVALGLVAGAVRI 302
>sp|P55602|Y4OQ_RHISN PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y4OQ
>gi|2182561|gb|AAB91803.1| (AE000089) Y4oQ [Rhizobium
sp. NGR234]
Length = 309
Score = 85.4 bits (208), Expect = 8e-16
Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 17/292 (5%)
Query: 6 RFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWN--VERYLHDFVGTYNYYRLVH 63
R + +F P ++ L +PL+ + Y S TG W+ V DF+G NY ++
Sbjct: 21 RISTVVWFTMPAAAIMLLVLGVPLVYSFYYSLTG---WSLVVPGSDQDFIGLLNYTDVLR 77
Query: 64 MFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPI 123
++ + ++ +V V + + +L + L L F FR L L+P +
Sbjct: 78 SSEFWAAIRVTLIYAVVAVSLECALGILFAVLLNLEFFGRG-----LFRSLMLIPMVITP 132
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
AV + W + S G N +L LG +P+PW A + +I V+ F
Sbjct: 133 AVVGIFWKLLYEQDS-GVFNYLLGTLGF--EPVPWLSLTV--ALASVIIVDVWQSTPFFT 187
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
++ + L + ++ V AA+ DGA+A Q+ R + P + + + ++ + ++ + +F
Sbjct: 188 LIILAGLQSLDRDTVSAAQADGANALQVFRYLTLPHLVPYIMIAAAFRIIGVMADFDKIF 247
Query: 244 LLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVI 295
LL + TTL++Y +NT F + + A + ++ +L I +I
Sbjct: 248 LLTLGG--PGNVTTTLSVYAYNTGFKVFDIGRTTAISWIYVVFVLAISAPLI 297
>pir||T36087 probable binding protein dependent transport protein - Streptomyces
coelicolor >gi|4678630|emb|CAB41203.1| (AL049661)
putative binding protein dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 327
Score = 85.4 bits (208), Expect = 8e-16
Identities = 74/303 (24%), Positives = 148/303 (48%), Gaps = 17/303 (5%)
Query: 6 RFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMF 65
R R L+P ++ + + +P++ T ++FT ++++ F G N+ +
Sbjct: 41 RRRVALLLLAPSLVHLVWWIGLPVVATFALAFT---DYDILAGTVTFNGLDNFQEIFS-- 95
Query: 66 KYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSA-FRLLWLLPRMSPIA 124
DPT+ A I T+VF T+ + ++ + + LA + G+A +R LP ++
Sbjct: 96 --DPTWNASIWHTVVFTFFTVPVAMV--IAVVLALLLNVKMRGAAWYRTAVFLPHVTATV 151
Query: 125 VYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMI 184
+LVW + F +G +N +L +G I+ P+ W + W ++I+ V+ G+ M+
Sbjct: 152 AIALVWMWMFE-PRLGVVNTMLGWIG-IDGPV-WLADPDWALTAVIV-VSIWKGIGIKML 207
Query: 185 VFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFL 244
++ +AL +P ++ AAR+DGAS + I PL+K +VL + + L++
Sbjct: 208 IYLAALQAMPNDVYEAARIDGASQVRQFFSITLPLLKPATFFVLVVSIIDSFQAFDQLYV 267
Query: 245 LVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
L D + T + ++ TAF E + G A A +V+L ++ +I+ ++ E+
Sbjct: 268 LTP-DGGPGNSTTVMTYEIYRTAF--KEFNMGAACAQSVVLFAFLLVLMLISRRLTGKED 324
Query: 305 MIK 307
++
Sbjct: 325 DVR 327
>pir||S77536 lactose transport system permease protein lacF - Synechocystis sp.
(strain PCC 6803) >gi|1652461|dbj|BAA17383.1| (D90905)
lactose transport system permease protein LacF
[Synechocystis sp.]
Length = 298
Score = 84.7 bits (206), Expect = 1e-15
Identities = 76/294 (25%), Positives = 134/294 (44%), Gaps = 29/294 (9%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHD------FVGTYNYYRLVHMFK 66
FL P ++M+ P + +SFT +Y D +VG N+ RL
Sbjct: 19 FLLPALVMLGATVFYPALQAFSLSFT--------QYELDLTKAPAWVGLANFERLWRDRV 70
Query: 67 YDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSA-FRLLWLLPRMSPIAV 125
+ TF+ +L + V + ++ L L LA + G FR+ + P ++ I V
Sbjct: 71 FWLTFRHTLLYLVGVVPLLIM------LPLGLAILVNQKLRGITWFRMAYYTPVITSIVV 124
Query: 126 YSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIV 185
+ W + +S G LN IL LG + IPW + WS+++ V G+ + M++
Sbjct: 125 AGIAWKALY--ASNGILNQILALLGF-SDGIPWLTSPNLALWSVMV-VTVWKGLGYYMVI 180
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
+ + L IP+EL A +DGA W+ I PLM+ + V +S L + ++++
Sbjct: 181 YLAGLQAIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIM 240
Query: 246 VEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
+ ++ T+ YV+ AF + + A+A ++L ++ I VI LK+
Sbjct: 241 TQGGPLNA--SKTVVYYVYERAF--QDLEMNYASAIGLVLFLVIFIFSVINLKL 290
>pir||G72379 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980937|gb|AAD35516.1|AE001721_15
(AE001721) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 286
Score = 84.7 bits (206), Expect = 1e-15
Identities = 81/297 (27%), Positives = 134/297 (44%), Gaps = 21/297 (7%)
Query: 5 SRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM 64
S R+ F+ P ++ + LF +P+I + F WN+ FVG N+ L+
Sbjct: 4 SLVRSRFIFVLPGLVFLVLFVAVPVISVFIMGFF---KWNLLSPPR-FVGLENFKMLLK- 58
Query: 65 FKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIA 124
D F + +I + + + + LGLAL + R + P M P
Sbjct: 59 ---DKWFWNSVWVSIKLLLLAVPMQFFVSLGLALC-LYEETTASKILRAFFYWPYMMPAV 114
Query: 125 VYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVN-GLVGVSFGM 183
+ +W + IG LN IL LGL P+PW +SI + G+ G+ M
Sbjct: 115 AGTTMWKWLL-SYDIGLLNHILRTLGL--PPVPWLIKPFPALFSIALLRTWGMTGLL--M 169
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
++F + L +P++ + AA +DGA+ WQ ++FP M L VL L ++ ++
Sbjct: 170 VMFITGLQNVPQDYIEAAMIDGANRWQRFWYVVFPAMSNTNLLVLMTAIAHTLRSFAGVY 229
Query: 244 LLVEWDLVDRDYGTT-LALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
+L Y TT + LY++ TAF + G + AA+VI ++ +ITLK+
Sbjct: 230 VLTTG---GPGYATTIIPLYIYQTAFTQFR--IGYSYAASVIYFLIAFAIAMITLKL 281
>gb|AAK41418.1| Sugar transport protein, hypothetical [Sulfolobus solfataricus]
Length = 297
Score = 83.9 bits (204), Expect = 2e-15
Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 13/287 (4%)
Query: 12 FFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTF 71
F++ P++I+ ++ PL+ ++YISFT + + Y +VG NY ++ + Y F
Sbjct: 15 FYILPIVIVTVFLFVFPLLYSVYISFTNLSLLHFLTY--SYVGLRNYL-IIFQYGY---F 68
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWY 131
++ T+++ +L+ + G LAL K S F + +LP P + L+W
Sbjct: 69 LELLKNTLIWTIGSLLTMMSLGFVLALILNQTDLKGRSIFYAILILPWAFPGFISILIWQ 128
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
+ G +N ++ L L++ P AW +I N + + M VF SAL
Sbjct: 129 GLWV-DPYGMMNRLI--LPLLHLPKVNSLTSTTDAWIELIATNDWLSFPYFMTVFYSALQ 185
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
IP+EL A +DGA+A+ I P +K +V F+ + +++L
Sbjct: 186 SIPRELYDIADLDGANAFTKFLTITLPSLKRTIAFVFITSFVFTWNNFYPIYVLTGGG-- 243
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLK 298
T +Y + AF + LAAA ++I +I I+ G+I +K
Sbjct: 244 PGISTETFIVYAYQEAF--SYNNFALAAAWSIISTIFVIVLGIIVIK 288
>pir||S63615 malF protein homolog cymF - Klebsiella oxytoca
>gi|854233|emb|CAA60005.1| (X86014) cymF [Klebsiella
oxytoca]
Length = 427
Score = 83.9 bits (204), Expect = 2e-15
Identities = 68/258 (26%), Positives = 122/258 (46%), Gaps = 15/258 (5%)
Query: 3 FDSRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERY-----LHDFVGTYN 57
+D+RF + L+P I F ++P+I+T+ +S T N++ + L D+VG N
Sbjct: 123 YDNRFATI--MLAPAFIACIAFIIMPMIITVLVSLT---NYSAPHHIPPKNLVDWVGLKN 177
Query: 58 YYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLL 117
+ L + + TF + + T+++ + G LALA A+R++++L
Sbjct: 178 FITLFELRIWSKTFVGIGVWTVLWAFFATLCTCSFGFLLALALENKKIIAKKAWRVVFIL 237
Query: 118 PRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLV 177
P P V L++ +G IG +N+ L G+ + + P A +I V+ V
Sbjct: 238 PYAIPAFVTLLIFRLLLNG--IGPVNSTLNSWGIDSIGF---LSDPLIAKMTVIAVSVWV 292
Query: 178 GVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLT 237
G + M++ T A+ IP++L A+ VDGAS +Q R I P++ L F
Sbjct: 293 GAPYFMLLITGAMTNIPRDLYEASEVDGASKFQQFREITLPMVLHQVAPSLVMTFAHNFN 352
Query: 238 TYPHLFLLVEWDLVDRDY 255
+ ++LL E ++ +Y
Sbjct: 353 NFGAIYLLTEGGPINPEY 370
>pir||G70943 hypothetical protein Rv2040c - Mycobacterium tuberculosis (strain
H37RV) >gi|2896777|emb|CAA17254.1| (AL021899)
hypothetical protein Rv2040c [Mycobacterium
tuberculosis]
Length = 300
Score = 83.5 bits (203), Expect = 3e-15
Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 16/288 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P + V +F L PL ++Y+SF + W++ + FV N+ L F DP F
Sbjct: 15 FVAPNLAAVVVFMLFPLGFSLYMSF---QKWDLFTHA-TFVRLDNFRNL---FTSDPLFL 67
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMSPIAVYSLVWY 131
++ T V+ T++ V+ + L +A F + G S FR + LP V ++VW
Sbjct: 68 IAVVNTAVYTVGTVVPTVI--VSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQ 125
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
+ F+ + G LN +L LG+ PIPW W S+ + V+ V F +V +A+
Sbjct: 126 FVFNTDN-GLLNIMLGWLGI--GPIPWLIEPRWAMVSLCL-VSVWRSVPFATVVLLAAMQ 181
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
+P+ + AAR+DGA + I PL++ +V+ + + +++L +
Sbjct: 182 GVPETVYEAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGG 241
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
L + +F AF E G A+A A ++ + ++ V+ L++
Sbjct: 242 PETATYVLGIMLFQHAFSFLE--FGYASALAWVMFAILLVLTVLQLRI 287
>dbj|BAA28360.1| (D85027) integral membrane protein [Thermus sp. A4]
Length = 282
Score = 83.1 bits (202), Expect = 4e-15
Identities = 75/296 (25%), Positives = 128/296 (42%), Gaps = 21/296 (7%)
Query: 6 RFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMR--NWNVERYLHDFVGTYNYYRLVH 63
R +A FL+P ++ LF+ P++ + Y+SF R W +E L N+ RL+
Sbjct: 2 RTKAPYLFLAPYLVFFGLFWAWPIVYSFYLSFVNTRVYPWRLEPAL-------NWGRLLQ 54
Query: 64 MFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPI 123
DP F + T+ + + + + + L LALA + +R + P +
Sbjct: 55 ----DPFFAVALKNTLFILAVQVPLMLALALLLALALNSALLRFKGFYRFAFFAPVVVGA 110
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
YS V+ F+ + G +NA+L LG + W P A ++II +
Sbjct: 111 VAYSAVFRLLFN-TEFGAVNALLRALG--HPGYDW-LYAPGPAMAVIIVALTWRWTGYNA 166
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
I+ + L IPKEL AA +DGA WQ R + P ++ L+ L + L + F
Sbjct: 167 IILLAGLQNIPKELYEAAAIDGAGPWQQFRHVTLPGIRPVLLFCLVLSIIGTLQLFTEPF 226
Query: 244 LLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
L+ + TL LY++ F + G A+ A +++L + L++
Sbjct: 227 LITGGG--PGNATMTLGLYLYQQGF--RSFNFGYASTIAYTVALLAAAFSFVQLRL 278
>emb|CAC11828.1| (AL445065) probable sugar ABC transporter, permease protein
[Thermoplasma acidophilum]
Length = 311
Score = 81.9 bits (199), Expect = 9e-15
Identities = 71/292 (24%), Positives = 143/292 (48%), Gaps = 23/292 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHD--FVGTYNYYRLVHMFKYDPT 70
F+ P++I V +F P I + IS ++ + + HD FVG NY ++ DP
Sbjct: 34 FVIPLMIFVIVFTFFPAIYSFAISL-----FHYDPFFHDIHFVGFSNYLYVIR----DPA 84
Query: 71 FKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM-SPIAVYSLV 129
F ++ +++ + + + G AL F + K R + +P + SP+++ S++
Sbjct: 85 FIKSLINVLIYTAVVVTVQTFLAFGYALL-FNTASKISRVARAIVFIPAVVSPVSM-SII 142
Query: 130 WYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSA 189
+ + F S+ G +N L G+ P W + + A+ I+ +N + MIV+++
Sbjct: 143 FIWVF--SNTGLVNYFLSFFGI--PPHNWLFSTVY-AFPAIMAMNIFTTAPYFMIVYSAG 197
Query: 190 LNQIPKELVIAARVDG-ASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
L IP+E++ AA++DG S + R + FPLM++ + V+ + + ++++ +
Sbjct: 198 LQAIPQEVMDAAKIDGLKSGLRRFRYVYFPLMRFSTILVVILGLTGAMQLFDQIYVITDG 257
Query: 249 DLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
Y +Y++N F D GLAAAA+ +L ++ ++ + +V+
Sbjct: 258 GPARATY--VPLMYIYNRTFVY-VGDIGLAAAASFVLFVIILVLTITQRRVI 306
>emb|CAB71197.1| (AL138538) putative sugar transport system permease protein
[Streptomyces coelicolor A3(2)]
Length = 314
Score = 81.5 bits (198), Expect = 1e-14
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F+SP ++ A+F+ PL+ T+Y S + V + F G N+ ++F+ P F
Sbjct: 20 FMSPWLVGFAVFFAYPLVSTVYFSLMKYDGFGVPQ----FRGLENW---AYVFQDYPLFW 72
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ T+ V + + V+ GLG+ L + G FR L+ LP ++P +L + +
Sbjct: 73 PALRNTLWLVLVMVTCRVVFGLGVGLLITKIRTGAG-VFRTLFYLPYLAPPVAATLAFVF 131
Query: 133 FFHGSSIGTLNAILMRLGLINQPIP-WGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
+ + G +N++L LG+ P P W + W ++ + GV M++F +AL
Sbjct: 132 LLNPGT-GPVNSVLEGLGV---PAPGWFTDSAWSKPALTALA--VWGVGDLMVIFMAALL 185
Query: 192 QIPKELVIAARVDGASAWQISRRILFP 218
+PKE AA +DGASAWQ R + P
Sbjct: 186 DVPKEQYEAAELDGASAWQRFRFVTLP 212
>sp|Q00750|MSMF_STRMU MULTIPLE SUGAR-BINDING TRANSPORT SYSTEM PERMEASE PROTEIN MSMF
>gi|282318|pir||C42400 membrane protein MsmF -
Streptococcus mutans >gi|153738|gb|AAA26935.1| (M77351)
membrane protein [Streptococcus mutans]
Length = 290
Score = 80.4 bits (195), Expect = 3e-14
Identities = 84/308 (27%), Positives = 133/308 (42%), Gaps = 40/308 (12%)
Query: 5 SRFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM 64
+++ +F + P+I+ V FY P+ + SF NW Y DFVG NY L+
Sbjct: 8 NKYWGWTFLIVPLILQVVFFYF-PMFQGAFYSFI---NWTGLTYNFDFVGINNYKILMTD 63
Query: 65 FKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLL-PRMSPI 123
K+ +++T+ + ++ LG+ +A ++ G F W P +
Sbjct: 64 GKFMKAIGFTLVSTLALIVGEIV------LGIIIARALNAKIKGKTFFRAWFFFPAVLSG 117
Query: 124 AVYSLVWYYFFH------GSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLV 177
SL++ F+ GS++G LG N GA IFV
Sbjct: 118 LTVSLIFKQVFNYGLPAVGSALGIKFLETSMLGTAN-----------GAVIASIFVLLWQ 166
Query: 178 GVSFGMIVFTSALNQIPKELVIAARVDGASA----WQISRRILFPLMKWHFLYVLTWQFL 233
GV+ +I+F S L IP E+V AA +DGA + W + L P + F+ L
Sbjct: 167 GVAMPIILFLSGLQSIPSEIVEAAAIDGADSKQTFWSVELPYLLPSISMVFIMALK---- 222
Query: 234 SLLTTYPHLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGG 293
+ LT + +F L + T+L L V+N AF + G A A A+IL I+ I
Sbjct: 223 AGLTAFDQIFALTGGG--PNNSTTSLGLLVYNYAFKSNQ--YGYANAIALILFIIIGIVS 278
Query: 294 VITLKVLK 301
V+ +K+ K
Sbjct: 279 VLQIKLSK 286
>sp|P37730|AMYD_THETU POTENTIAL STARCH DEGRADATION PRODUCTS TRANSPORT SYSTEM PERMEASE
PROTEIN AMYD >gi|481065|pir||S37704 amyD protein -
Thermoanaerobacterium thermosulfurigenes
>gi|565383|gb|AAB00843.1| (M57692) membrane protein for
maltose transport [Thermoanaerobacterium
thermosulfurigenes] >gi|228282|prf||1802282A sugar
transport protein [Thermoanaerobacterium
thermosulfurigenes]
Length = 292
Score = 80.4 bits (195), Expect = 3e-14
Identities = 75/297 (25%), Positives = 140/297 (46%), Gaps = 37/297 (12%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWN-VERYLHDFVGTYNYYRLVHMFKYDPTF 71
F++P ++ + + LIP I+ IY SFT +WN + + + F+G N+ L ++ +
Sbjct: 17 FIAPTLLSLIIVVLIPFIIGIYYSFT---DWNGINQPV--FIGLKNFMTLRDDAEF---W 68
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAF-RLLWLLPRMSPIAVYSLVW 130
++I T V +IINV+G L+LA + F R + LP + + +W
Sbjct: 69 NSIIFTAKFAVACIVIINVVG---LSLAMLVTRKIFARNFMRTAFYLPNLIGGLILGFIW 125
Query: 131 YYFFHGSSIGTLNAI--LMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTS 188
+ F + I +G + W G W ++I + + + + M+++ +
Sbjct: 126 NFIF----VDVFQTISDATHIGWLGG---WLSTTNTGFWGLVIVTSWQM-IGYVMVIYIA 177
Query: 189 ALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
+ IP +L+ A+++DGA++WQ R ++FPL+ F +SL T + F L +
Sbjct: 178 YIESIPTDLIEASKIDGANSWQQFRNVVFPLIAPAFT-------VSLFITLSNSFKLFDQ 230
Query: 249 DL---VDRDYGTT--LALYVFNTAFGRGEQDQGLAAAAA--VILSILGIIGGVITLK 298
+L TT + L ++ TAF E G A A +I++++ +I +T K
Sbjct: 231 NLSLTAGAPGNTTQMITLNIYQTAFSAQEMAVGQAKAVIMFLIIAVISVIQVYLTQK 287
>sp|Q9Z3R6|AGLF_RHIME ALPHA-GLUCOSIDES TRANSPORT SYSTEM PERMEASE PROTEIN AGLF
>gi|4210906|gb|AAD12049.1| (AF045609) AglF
[Sinorhizobium meliloti]
Length = 290
Score = 80.4 bits (195), Expect = 3e-14
Identities = 69/283 (24%), Positives = 134/283 (46%), Gaps = 36/283 (12%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
FL+P ++ + L+ + P++ ++++S G N FVG NY +++ D F+
Sbjct: 12 FLAPALLALTLYLVYPVVQSVWLSLHGRGGQN-------FVGLSNYSWMIN----DGEFR 60
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
I +++ + ++ GL +A T + G+ + L +P +++W +
Sbjct: 61 QSIFNNFLWLLVVPALSTFFGLIIAALTDRIWW--GNIAKTLIFMPMAISFVGAAVIWKF 118
Query: 133 FFH-----GSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
+ IG LNAI++ LG +P W W + +++ + + F M++ +
Sbjct: 119 IYDYRAAGSEQIGLLNAIVVALG--GEPQAWITLPFWNNFFLMVILIW-IQTGFAMVILS 175
Query: 188 SALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE 247
+AL IP+E + AA +DGA+ WQI +I+ P + W ++++ T + +L
Sbjct: 176 AALRGIPEETIEAAVIDGANGWQIFFKIMVPQI---------WGTIAVVWTTITILVLKV 226
Query: 248 WDLV-----DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVIL 285
+D+V + LA +F+ F RG D G AA AV++
Sbjct: 227 FDIVLAMTNGQWQSQVLANLMFDWMF-RGGGDFGRGAAIAVVI 268
>dbj|BAB04621.1| (AP001510) L-arabinose transport system (permease) [Bacillus
halodurans]
Length = 316
Score = 80.0 bits (194), Expect = 4e-14
Identities = 69/276 (25%), Positives = 121/276 (43%), Gaps = 18/276 (6%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKA 73
+SP I+ + P + I +SF + V FVG +NY R+++ PTF
Sbjct: 38 ISPFILSFIVLSFYPTVQAIVMSFQRVLPSEVT-----FVGLWNYSRILN-----PTFFT 87
Query: 74 VILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYF 133
+ T ++ +T++I V + A+ K FR LP ++ + V +V+
Sbjct: 88 ALQNTTTYMILTVVILVSIPMLFAVLLNSKVVKFRILFRTALFLPALTSVIVAGMVFRLM 147
Query: 134 FHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQI 193
F S N IL +GL + + W N W +++ + + ++ F +AL +
Sbjct: 148 FSESDTAVANQILNWIGL--ESVEWRYNA-WSGMFLMVVLASWRWMGINILYFLAALQNV 204
Query: 194 PKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDL-VD 252
PKEL AA +DGA+ Q + P +K ++V T + + F V W+
Sbjct: 205 PKELYEAADIDGANVVQKFFYVTLPFLKPVTIFVTTISVIGGFRMFEESF--VFWEAGSP 262
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSIL 288
+ G T+ Y++ G + D G AA V+L ++
Sbjct: 263 GNIGLTIVGYLYQE--GIQQNDMGFGAAIGVVLMLI 296
>sp|O32155|YURN_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YURN
>gi|7442704|pir||E70018 sugar permease homolog yurN -
Bacillus subtilis >gi|2635756|emb|CAB15249.1| (Z99120)
similar to sugar permease [Bacillus subtilis]
Length = 292
Score = 79.6 bits (193), Expect = 5e-14
Identities = 71/290 (24%), Positives = 131/290 (44%), Gaps = 15/290 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
FL P ++ + LF IP+ +++S +++ E+ F+G NY L H DP F
Sbjct: 12 FLVPALVFL-LFVYIPIFENVFLSLFQWSSFSPEK---TFIGLKNYVELFH----DPVFY 63
Query: 73 AVILTTIVFVGITLIINVLGGLGLA-LATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWY 131
+ +++ I+++ V GGL LA + + K FR ++ LP + + V +L+ +
Sbjct: 64 QALTNNVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALL-F 122
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
F + G LN +L +GL W + S+I FV+ V + +++ ++
Sbjct: 123 DFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVI-FVSQWQSVGYIAMLYIVSIQ 181
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
+IP EL AAR+DGA Q I P K + T + ++L
Sbjct: 182 KIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGG-- 239
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLK 301
L+ +++ +AF + G A+A A ++ I+ + ++ +K K
Sbjct: 240 PGKASEVLSTFLYKSAFTK--DMMGYASAIATVVLIITLALSLMQMKFFK 287
>pir||F72292 glycerol-3-phosphate ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981667|gb|AAD36197.1|AE001770_9 (AE001770)
glycerol-3-phosphate ABC transporter, permease protein
[Thermotoga maritima]
Length = 302
Score = 79.6 bits (193), Expect = 5e-14
Identities = 77/299 (25%), Positives = 136/299 (44%), Gaps = 34/299 (11%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKA 73
L P +++ LF P + ++ +SF + + FVG N+ RL P +
Sbjct: 24 LLPTFVIITLFIYWPAVYSLRLSFYRITPFGNRMV---FVGLRNFQRLFQ----SPEYLN 76
Query: 74 VILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSA-FRLLWLLPRMSPIAVYSLVWYY 132
I T+V+V +L + + L +A PG+ FR L P A+ ++W +
Sbjct: 77 AIKVTVVYVLASLFLTIF--LAFFIALLLNMNLPGNRIFRALIFTPYAISPAIAGVLWSF 134
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
+ +G +N IL +L + W P+ ++II + F +I + + L
Sbjct: 135 LLN-PVVGHVNYILSKL--FGLQVEWLTTKPYALIAVIIATVWKT-LPFDIIFYLAGLQD 190
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
IP+EL+ A+ V+GA++W + +I+FPL+ Y++ +S F+ + ++D
Sbjct: 191 IPQELIEASLVEGANSWARTWKIVFPLLSPITFYLVIMNLVS--------FMFSSFAIID 242
Query: 253 -------RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
+Y TTL ++ AF Q G AAA +VIL +I ++T+ KF E
Sbjct: 243 VTTKGGPGNYTTTLIYRLYLDAF--AFQKIGPAAAQSVILF---LIMAIVTIFYFKFGE 296
>gb|AAD51828.1|AF175299_3 (AF175299) ThuF [Sinorhizobium meliloti]
Length = 328
Score = 79.6 bits (193), Expect = 5e-14
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 16/250 (6%)
Query: 6 RFRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM- 64
R R+ FL+P +++AL PLI TIY SFT N+ +FVG NY + +
Sbjct: 27 RVRSAWLFLAPTFLVLALVAGWPLIRTIYFSFTNASLTNLSG--AEFVGFANYLSWITLK 84
Query: 65 --------FKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAF-RLLW 115
DP + + T+ F L +++ LGL +A ++ PG R
Sbjct: 85 SGRTIYRGLLADPAWWNAVWNTLKFT--VLSVSIETALGLIVALVLNAQFPGRGLVRAAI 142
Query: 116 LLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNG 175
L+P P V + +W + + G LN +L+ LGLI + I W + P A + V+
Sbjct: 143 LIPWAIPTIVSAKMWAWMLN-DQFGILNDMLIGLGLIGEKIAWTAS-PDTAMIAELIVDV 200
Query: 176 LVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSL 235
F ++ + L +P ++ AA++DG ++ R+ PL++ + + ++ L
Sbjct: 201 WKTTPFMALLILAGLQMVPGDIYEAAKIDGVHPVRVFWRVTLPLIRPALMVAVIFRMLDA 260
Query: 236 LTTYPHLFLL 245
L + +++L
Sbjct: 261 LRIFDLIYVL 270
>pir||H70033 maltodextrin transport system permease homolog yvdH - Bacillus
subtilis >gi|1945667|emb|CAB08037.1| (Z94043)
hypothetical protein [Bacillus subtilis]
>gi|2635973|emb|CAB15465.1| (Z99121) similar to
maltodextrin transport system permease [Bacillus
subtilis]
Length = 435
Score = 78.8 bits (191), Expect = 8e-14
Identities = 70/293 (23%), Positives = 131/293 (43%), Gaps = 17/293 (5%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVE-RYLHDFVGTYNYYRLVHMFKYDPTF 71
F P IM+ + P+++T++++ T +++ L D+VG N+ + + Y TF
Sbjct: 132 FTLPAYIMMVFVIIFPVLVTLFVALTNYDFYHIPPNRLIDWVGFKNFLNIFFLGSYRETF 191
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSE--KPGSAFRLLWLLPRMSPIAVYSLV 129
V+ T+++ + ++ LG+ A F + K FR+++L P P + +
Sbjct: 192 VNVLGWTVIWTICATTLQII--LGIVTALFVNQDFIKGKRIFRMIFLFPWAVPAFITIMS 249
Query: 130 WYYFFHGSSIGTLNA----ILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIV 185
+ F+ SIG +NA + L + P + P+ + +I + +G + ++
Sbjct: 250 FSNMFN-DSIGAVNAQVIPLFNHLPFVELPAIAWKTDPFWTKTALIMIQTWLGFPYIYVM 308
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
T L IP EL AA++DGA+ Q R I FP++ + V+ Q+ + ++L
Sbjct: 309 VTGVLQAIPGELYEAAKIDGATFIQRFRHITFPMILFATAPVMITQYTFNFNNFSIIYLF 368
Query: 246 VEWDLVDRDYGT----TLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGV 294
E G L +++ G Q + AAAV L I I+ G+
Sbjct: 369 NEGGPGSAGAGAGSTDILISWIYKLTTGTSPQ---YSVAAAVTLLISFIVIGI 418
>dbj|BAB04837.1| (AP001511) lactose transport system (permease) [Bacillus
halodurans]
Length = 318
Score = 78.8 bits (191), Expect = 8e-14
Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 41/292 (14%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFT-----GMRNWNVERYLHDFVGTYNYYRLVHMFKYD 68
+SP ++ + P+I ++Y SFT NW VG NY +H+F D
Sbjct: 36 ISPWLLGFFGLVIGPMIASLYFSFTDYDMLSSANW---------VGLQNY---IHIFTSD 83
Query: 69 PTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM--SPIAVY 126
P F + T++FV + + + L LA+ F K F ++ +P + +AV
Sbjct: 84 PRFVQSLKVTLIFVFVPTPLKLAFALFLAML-FNTGRKGSGLFSTIYYIPSIIGGSVAV- 141
Query: 127 SLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFG--MI 184
++VW F S G +N+ L G + W + + A SI+I LV FG MI
Sbjct: 142 AVVWKQLF--GSRGAVNSFLELFGFSG--VNWIGSTDY-ALSILIL---LVVWQFGSPMI 193
Query: 185 VFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFL 244
+F + L QIP+EL AA VDGA++++ I P++ + L Q + T+ +L
Sbjct: 194 IFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQAYL 253
Query: 245 LVEWDLVDRDYGTTL--ALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGV 294
+ +D +TL A+Y++ AF G A+A A IL L IIGG+
Sbjct: 254 ITGGGPLD----STLFYAVYLYEVAF--EYLRMGYASAMAWIL--LVIIGGI 297
>sp|P26467|MALF_SALTY MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALF
>gi|96792|pir||S20604 inner membrane protein malF -
Salmonella typhimurium >gi|47774|emb|CAA38190.1|
(X54292) malF [Salmonella typhimurium]
Length = 514
Score = 78.0 bits (189), Expect = 1e-13
Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 14/280 (5%)
Query: 34 YISFTGMRNWNVERYLHDF---VGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINV 90
Y S G +W E+ + +G N+ R+ F A+ + T+VF +T+++ V
Sbjct: 237 YQSINGDGSWGDEKLSPGYTVTIGAKNFTRVFTDEGSQKPFFAIFVWTVVFSVLTVVLTV 296
Query: 91 LGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLG 150
G+ LA + + K + +R+L +LP P + L++ F+ S G +N +L L
Sbjct: 297 AVGMVLACLVQWEALKGKAIYRVLLILPYAVPSFISILIFKGLFN-QSFGEINMMLSALF 355
Query: 151 LINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQ 210
I P + P A +++I VN +G + MI+ L IP +L A+ +DGA +Q
Sbjct: 356 GIK---PAWFSDPNTARAMVIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Query: 211 ISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE------WDLVDRDYGTTLALYVF 264
+I PL+ ++ F + + LL Y L Y +
Sbjct: 413 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVSYTY 472
Query: 265 NTAF-GRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
AF G G QD GLAAA A ++ +L ++ LK + +
Sbjct: 473 RIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMK 512
>pir||T35671 probable transmembrane transport protein - Streptomyces coelicolor
>gi|2661678|emb|CAA15783.1| (AL009199) probable
transmembrane transport protein [Streptomyces coelicolor
A3(2)]
Length = 353
Score = 78.0 bits (189), Expect = 1e-13
Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 20/303 (6%)
Query: 7 FRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFK 66
F ++FFL+ + + +A+F + LI F GM +W ++FVG N+ + MF+
Sbjct: 31 FDRVTFFLAFLGVPLAIFVIFVLIPFGQAIFWGMTDWRGFSPDYNFVGFDNFTK---MFQ 87
Query: 67 YDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG--------SAFRLLWLLP 118
D KA+ ++ + L+ L LG+A+A G S +R++ P
Sbjct: 88 DDIFLKALRNVALLAAFVPLVTLTL-ALGVAVAITLGGPSKGPVRGIRGASFYRIISFFP 146
Query: 119 RMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLIN-QPIPW-GQNVPWGAWSIIIFVNGL 176
+ P + L+W + ++ G LN +L LGL W G+ + + V GL
Sbjct: 147 YVVPAIIVGLIWAQMYDPNA-GLLNGVLTGLGLDQFDTFAWLGEKAAAMPAVMFVIVWGL 205
Query: 177 VGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLL 236
VG F ++F +A+ +P EL AA++DGA ++ + I P ++ + ++ L
Sbjct: 206 VG--FYAVLFIAAIKGVPGELYEAAKIDGAGRFRTTISITLPAIRDSVQTAYIYLGIAAL 263
Query: 237 TTYPHLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVIT 296
+ ++ +V D T++ +FN AF + Q G A A V+L+ + ++ +
Sbjct: 264 DAFVYVQAMVPNGGPDNS-TLTISQRLFNVAFAK--QQFGYATAMGVVLAAVTLVFAALV 320
Query: 297 LKV 299
V
Sbjct: 321 FLV 323
>emb|CAB55533.1| (AL117322) putative binding-protein-dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 317
Score = 78.0 bits (189), Expect = 1e-13
Identities = 74/288 (25%), Positives = 124/288 (42%), Gaps = 19/288 (6%)
Query: 8 RALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKY 67
+A FL+P ++ ALFY P + IY S T DFVG NY RL+
Sbjct: 35 KAAWLFLAPALLGFALFYAYPTVRGIYYSLTDYSLIATP----DFVGGDNYSRLIG---- 86
Query: 68 DPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYS 127
D F + T +V + ++ L L L LAT A R + L+P + P
Sbjct: 87 DEQFWNALQVTGYYVLVNIVSQTL--LALVLATLMHRLTRSVALRAMLLVPWLVPNVTVG 144
Query: 128 LVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
L+W + +++G +N +L +G+ P A + VN + ++
Sbjct: 145 LLWMWLLD-TNLGLVNHVLNSMGMGTTGF---FTSPDWAMPSVAAVNTWAYTGYTALLLY 200
Query: 188 SALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE 247
+ + Q+P+ L +A +DGA W++ RI PL++ VL + + + + +
Sbjct: 201 AGMLQVPQYLYESASLDGAGEWRMFTRITLPLLRPVLSLVLVVSLIGSFQIFDTIAVTTK 260
Query: 248 WDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILS-ILGIIGGV 294
V + Y++ AF G A+A AV+L+ ILG++ V
Sbjct: 261 GGPVSAT--RVIYYYIYEQAFTNFH--MGYASAVAVVLALILGVLTAV 304
>sp|P02916|MALF_ECOLI MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALF
>gi|72500|pir||MMECMF maltose transport inner membrane
protein malF - Escherichia coli
>gi|396368|gb|AAC43127.1| (U00006) maltose transport
inner membrane protein [Escherichia coli]
>gi|455175|gb|AAB59055.1| (J01648) cytoplasmic
maltose-binding protein [Escherichia coli]
>gi|1790465|gb|AAC77003.1| (AE000476) part of maltose
permease, periplasmic [Escherichia coli K12]
Length = 514
Score = 77.3 bits (187), Expect = 2e-13
Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 14/280 (5%)
Query: 34 YISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYD---PTFKAVILTTIVFVGITLIINV 90
Y S T NW E+ + T + +F + F A+ + T+VF IT+ + V
Sbjct: 237 YQSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTV 296
Query: 91 LGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLG 150
G+ LA + + + + +R+L +LP P + L++ F+ S G +N +L L
Sbjct: 297 AVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFN-QSFGEINMMLSALF 355
Query: 151 LINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQ 210
+ P + P A +++I VN +G + MI+ L IP +L A+ +DGA +Q
Sbjct: 356 GVK---PAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Query: 211 ISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE------WDLVDRDYGTTLALYVF 264
+I PL+ ++ F + + LL Y L Y +
Sbjct: 413 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTY 472
Query: 265 NTAF-GRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
AF G G QD GLAAA A ++ +L ++ LK + +
Sbjct: 473 RIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMK 512
>sp|P18812|MALF_ENTAE MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALF
>gi|78245|pir||S05332 inner membrane protein malF -
Enterobacter aerogenes
Length = 514
Score = 77.3 bits (187), Expect = 2e-13
Identities = 74/280 (26%), Positives = 124/280 (43%), Gaps = 14/280 (5%)
Query: 34 YISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYD---PTFKAVILTTIVFVGITLIINV 90
Y S +W E+ + T + +F+ + F A+ + T+VF +T+I+ V
Sbjct: 237 YQSINADGSWGNEKLSPGYTVTIGWDNFTRVFQDEGIQKPFFAIFVWTVVFSVLTVILTV 296
Query: 91 LGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLG 150
G+ LA + + K + +R+L +LP P + L++ F+ S G +N +L L
Sbjct: 297 AVGMVLACLVQWEALKGKAIYRVLLILPYAVPSFISILIFKGLFN-QSFGEINMMLSALF 355
Query: 151 LINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQ 210
I P + P A ++II VN +G + MI+ L IP +L A+ +DGA +Q
Sbjct: 356 GIK---PAWFSDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Query: 211 ISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVE------WDLVDRDYGTTLALYVF 264
+I PL+ ++ F + + LL Y L Y +
Sbjct: 413 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVSYTY 472
Query: 265 NTAF-GRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
AF G G QD GLAAA A ++ +L ++ LK + +
Sbjct: 473 RIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMK 512
>sp|P77653|YCJO_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YCJO
>gi|7442722|pir||B64880 probable multiple sugar
transport protein b1311 precursor - Escherichia coli
>gi|1742149|dbj|BAA14887.1| (D90769)
Sn-glycerol-3-phosphate transport system permease
protein UgpA. [Escherichia coli]
>gi|1787570|gb|AAC74393.1| (AE000229) putative
binding-protein dependent transport protein [Escherichia
coli K12]
Length = 293
Score = 76.9 bits (186), Expect = 3e-13
Identities = 80/286 (27%), Positives = 134/286 (45%), Gaps = 23/286 (8%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMR-NWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
L+P ++++ P++ I ISF + N N+E FVG NY R++ DP F
Sbjct: 18 LAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIES---TFVGVSNYVRILS----DPGFW 70
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSE-KPGSAFRLLWLLPRMSPIAVYSLVWY 131
+ T+ + + + + + LGLA+A FF E + R L +L ++P W
Sbjct: 71 HSLWMTVWYTALVVAGSTV--LGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWK 128
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
Y F+ + G +N + + L + + P + P ++ +++ + I F + L
Sbjct: 129 YMFN-NGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQ 187
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
I K L AA +DGA+AWQ R + P + V+T + + + + ++LL V
Sbjct: 188 TIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT--TKV 245
Query: 252 DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITL 297
D L +Y++ TAF D G AAA +V+L I II VI L
Sbjct: 246 D-----ILGVYLYKTAF--AFNDLGKAAAISVVLFI--IIFAVILL 282
>pir||E69585 sugar transport amyD - Bacillus subtilis >gi|2293307|gb|AAC00385.1|
(AF008220) sugar transporter [Bacillus subtilis]
>gi|2635512|emb|CAB15006.1| (Z99119) amyD [Bacillus
subtilis]
Length = 303
Score = 76.9 bits (186), Expect = 3e-13
Identities = 75/290 (25%), Positives = 125/290 (42%), Gaps = 18/290 (6%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKAVI 75
P ++ V +F + P + I+FT NWN ++ +VG Y RL DP ++
Sbjct: 27 PALLSVLVFMIYPFVKGTLITFT---NWNGFSQVYQWVGFAQYERLFS----DPDTWHIL 79
Query: 76 LTTIVF-VGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFF 134
T+ + +G T NV+G L L S K + R + LP M + +WY+FF
Sbjct: 80 KNTLHYGLGSTFFQNVVGLLYALLLN--QSIKTKAVTRTIVYLPVMISPLIMGYIWYFFF 137
Query: 135 HGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIP 194
G LN +L G+ PI + W II+ +N V M+V+ + L IP
Sbjct: 138 SYDG-GALNDLLGVFGI--SPINALASPSLNPW-IIVMINTYQYVGIAMVVYLAGLQSIP 193
Query: 195 KELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVDRD 254
K+ AA++DGA Q I PL+ + + L + + L +
Sbjct: 194 KDYYEAAQMDGAKQGQQFFTITLPLLMPSITINIVINIIGGLKLFDVIIALTAGG--PGN 251
Query: 255 YGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
+++ ++++ F R QD G AA + ++ + +I L K +E
Sbjct: 252 ASQSMSTFMYDLYFKR--QDAGYAATQGIFMAFVILIISFCALAYFKRKE 299
>emb|CAB95283.1| (AL359779) putative sugar transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 311
Score = 76.5 bits (185), Expect = 4e-13
Identities = 68/298 (22%), Positives = 140/298 (46%), Gaps = 23/298 (7%)
Query: 7 FRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFK 66
F A F++P ++ A F L PL+ + +SFT + +F+G NY L+
Sbjct: 30 FLAPYLFVAPFYVVFAAFGLYPLVFALQLSFTDWKGAGEA----NFIGLENYTYLLT--- 82
Query: 67 YDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVY 126
F + + + V + + + ++GGL A+ + FR+ ++ P ++P+
Sbjct: 83 -SEEFWSSLGNSAVMWLLIVPLQIVGGLAAAVLLANAKLRLRGMFRVAFIAPFVTPLVAM 141
Query: 127 SLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSI-IIFVNGLVGVSFGMIV 185
+ VW F + G +N + +GL + + W Q+ W ++ ++F+ G F +I+
Sbjct: 142 AQVWIVAFD-TDYGLVNHLFNFVGLPD--VDWLQSTVWAKPTLALLFLWKTTG--FAIII 196
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
+ L +P ++ AA +DGAS + + PL++ +++ Q L++ + F++
Sbjct: 197 LLAGLQAVPGDVYEAAALDGASRKRQFWSLTLPLVRRSIAFLVVVQTLAVFQMFAEPFVV 256
Query: 246 VEWDLVDRDYG--TTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLK 301
+ YG TT LY++N D G AA + +L +L ++++++L+
Sbjct: 257 TQ----GGPYGSTTTGGLYLYNHILA---SDLGTGAANSFLLVLLVFALSLLSVRLLR 307
>gb|AAC45767.1| (AF018073) sorbitol/mannitol transport inner membrane protein; SmoF
[Rhodobacter sphaeroides]
Length = 290
Score = 76.1 bits (184), Expect = 5e-13
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%)
Query: 9 ALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYD 68
A +SP +I++ L+ ++PL +T+Y SF +R + + F G NYY F D
Sbjct: 9 AARLMISPAVILLFLWMIVPLSMTLYFSF--LRYNLLMPGMESFTGWDNYY----YFLTD 62
Query: 69 PTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKP---GSAFRLLWLLPRMSPIAV 125
P F A + TI+ V L+I V+GG+ LAL + ++P R+L + P V
Sbjct: 63 PAFSAALTNTILLVVGVLLITVVGGVLLAL----LLDQPFWGQGIVRVLVIAPFFVMPTV 118
Query: 126 YSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIV 185
+LVW F G I LGL P + P + II + + F ++
Sbjct: 119 SALVWKNMFMNPVNGMFAHIARGLGL--PPFDFLSQAPLAS---IIGIVAWQWLPFATLI 173
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
+AL + +E + AA +DGASA I P + V+ Q + LL + + +
Sbjct: 174 LLTALQSLDREQMEAAEMDGASALDRFIHITVPHLTRAITVVVLIQTIFLLGVFAEILVT 233
Query: 246 VEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
T +Y + D G +A ++ +L I + ++++
Sbjct: 234 TNGGPGTASTNITYLVYAQSLL----NYDVGGGSAGGIVAVVLANIVAIFLMRMI 284
>gb|AAD33665.1|AF135398_2 (AF135398) putative integral membrane protein [Thermus brockianus]
Length = 280
Score = 76.1 bits (184), Expect = 5e-13
Identities = 77/291 (26%), Positives = 131/291 (44%), Gaps = 26/291 (8%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMR--NWNVERYLHDFVGTYNYYRLVHMFKYDPT 70
FL+P ++ A+F+ P+ ++Y+SF R W +E VG N+ RL+ DP
Sbjct: 8 FLTPYALLFAVFWAWPIAYSLYLSFLNTRVYPWRLE------VGV-NWGRLLQ----DPF 56
Query: 71 FKAVILTT--IVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSL 128
F + T I+ V + L++ L L LAL + + K FR + P + YS
Sbjct: 57 FWTALKNTLFILLVQVPLML-ALALLALALNSALLRAK--GFFRFAFFAPVVVGAVAYSA 113
Query: 129 VWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTS 188
V+ F+ + G +NA+L LG + W P A ++II + I+ +
Sbjct: 114 VFRLLFN-TEFGAVNALLRTLG--HPGYDW-LYAPGPAMAVIIIALTWRWTGYNAIILLA 169
Query: 189 ALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
L IPKEL AA +DGA WQ + P ++ L+ L + L + FL+
Sbjct: 170 GLQSIPKELYEAAALDGAGPWQRFWHVTLPGIRPVLLFALILSIIGTLQLFTEPFLITGG 229
Query: 249 DLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
+ TL +Y++ F + G A+A A +++L + + +++
Sbjct: 230 G--PGNATMTLGVYLYQQGF--RSFNFGYASAIAYTVALLAALFSFLQMRL 276
>emb|CAB61807.1| (AL133236) putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 315
Score = 76.1 bits (184), Expect = 5e-13
Identities = 72/286 (25%), Positives = 127/286 (44%), Gaps = 21/286 (7%)
Query: 8 RALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKY 67
+ ++ L+P I ++ PL + S +R+ + +F+G NY +
Sbjct: 33 KTMAAMLAPSIFLLIALNAYPLFYAVSQS---LRDGGIAGP-GEFIGLENYTTALQ---- 84
Query: 68 DPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMSPIAVY 126
DP F + T++F +++ + + +G ALA PG S FR+L LLP + P+ V
Sbjct: 85 DPAFWEAVRFTLLFTVVSVFVAWV--IGTALALVLRRSFPGRSVFRVLLLLPWVVPVVVS 142
Query: 127 SLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVF 186
+ W + S + +L LG + I P A +I+I V F M++
Sbjct: 143 TTSWNFLVATPS-SPVPTLLRELGFGDVQILAN---PGSAMAIVIIFKIWGTVPFMMMMM 198
Query: 187 TSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLT--TYPHLFL 244
+SAL + + A R+DGAS WQ R ++ P+M + W S+ T +P +FL
Sbjct: 199 SSALQAVDPSVEEACRLDGASRWQRIRHVILPIMSKP--VYIAWVLASIFTINDFPSVFL 256
Query: 245 LVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGI 290
L V +TL ++ + F G+A A + +++ +
Sbjct: 257 LTGGGPVGST--STLVVFAYRLVFQDFRTGYGVAVAFLITTALIAM 300
>pir||E70703 probable uspA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1524284|emb|CAB02051.1| (Z79702) uspA [Mycobacterium
tuberculosis]
Length = 290
Score = 75.3 bits (182), Expect = 9e-13
Identities = 79/305 (25%), Positives = 142/305 (45%), Gaps = 30/305 (9%)
Query: 6 RFRALSF-FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHM 64
R AL++ L+P ++ V F L+P+++ +++S + W++ L +VG N+ ++
Sbjct: 7 RRTALAYALLAPSLVGVVAFLLLPILVVVWLS---LHRWDLLGPLR-YVGLTNWRSVLT- 61
Query: 65 FKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSA-FRLLWLLPRMSPI 123
D F ++ T VFV I + + LGL A+ PG+ FR L++LP +
Sbjct: 62 ---DSGFADSLVVTAVFVAIVVPAQTV--LGLLAASLLARRLPGTGLFRTLYVLPWICAP 116
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
+++W + + G ++ +L I W + P A ++ V V +
Sbjct: 117 LAIAVMWRWIVAPTD-GAISTVL------GHRIEWLTD-PGLALPVVSAVVVWTNVGYVS 168
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
+ F + L IP+++ AAR DGASAWQ RI P+++ +VL +S + ++
Sbjct: 169 LFFLAGLMAIPQDIHNAARTDGASAWQRFWRITLPMLRPTMFFVLVTGIISAAQVFDTVY 228
Query: 244 LLVEWDLVDRDYGTT--LALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLK 301
L G+T +A ++ AFG G A+ AV+L + I+ G ++ L
Sbjct: 229 ALTG----GGPQGSTDLVAHRIYAEAFGAAA--IGRASVMAVVLFV--ILVGATVVQHLY 280
Query: 302 FEEMI 306
F I
Sbjct: 281 FRRRI 285
>emb|CAB86098.1| (AL163003) putative sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 313
Score = 75.3 bits (182), Expect = 9e-13
Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 20/283 (7%)
Query: 7 FRALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYR-LVHMF 65
F+ +F++P + + ALF + PL+ +Y+SFT N+ +F+G NY L
Sbjct: 30 FQHGGWFVAPFLALFALFVVWPLLRGLYLSFTDA---NISGDSANFIGLDNYREALKDPL 86
Query: 66 KYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAV 125
+D + T +V IT++ +L L + E+ +RL + LP + P V
Sbjct: 87 MWDALGHSAYFTLLVVPCITVLALLLAMLAHHI------ERGKWLWRLCFFLPFLLPSTV 140
Query: 126 YSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIV 185
+ +W + F+ + G +N + GL PW + + +++I V F ++
Sbjct: 141 AANLWQWLFNPGT-GMVNHVF---GL---ETPWLTDKSYAMLAVVITTLWWT-VGFSFLL 192
Query: 186 FTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLL 245
+ +AL IP L AA++DGA+AW I P+++ V+ Q L+ L + ++
Sbjct: 193 YLAALQGIPAHLYEAAKLDGANAWHRILHITLPMLRNITGLVVALQILASLQVFDQAVVI 252
Query: 246 VEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSIL 288
++ D T Y F G A+A ++I +L
Sbjct: 253 QDFGPGPEDSTRTFVQYTLEQGF--TSYRVGYASAISIIFFVL 293
>sp|O58759|YA38_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1038
>gi|7442711|pir||B71097 hypothetical protein PH1038 -
Pyrococcus horikoshii >gi|3257453|dbj|BAA30136.1|
(AP000004) 291aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 291
Score = 74.9 bits (181), Expect = 1e-12
Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 23/220 (10%)
Query: 12 FFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHD-FVGTYNYYR------LVHM 64
FFL P + ++ F + P+ TIY+SF +L D FVG NY +V++
Sbjct: 9 FFLLPALTLMVPFVIYPVFKTIYLSF----------FLGDKFVGLENYKNVLLSPDIVNL 58
Query: 65 FKY---DPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMS 121
++ P + A+I IV++ I L + GLG AL K S + + L +
Sbjct: 59 ERFPTKSPPWGALI-HNIVWIAIHLPTTIFLGLGFALLLRKKEVKGSSIIKSIIFLGMVI 117
Query: 122 PIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSF 181
P+ V L+ + F + G + A +G+ I W P A +I + + F
Sbjct: 118 PMVVGGLIIRFLFEEGA-GVIPAFFKLIGIEKLAITWTA-YPQTALFSVILGSIWIWTGF 175
Query: 182 GMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMK 221
M+++++ L IPK+ AA +DGA+ +QI R +++PL++
Sbjct: 176 SMLMYSAGLASIPKDYYEAALIDGANKFQIFRFVIWPLLR 215
>gb|AAF37728.1| (AF086819) cellobiose transport permease BglA [Thermobifida fusca]
Length = 302
Score = 74.9 bits (181), Expect = 1e-12
Identities = 78/293 (26%), Positives = 142/293 (47%), Gaps = 22/293 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F++P I+ A+F L PL+ T+++S + +W + F +Y RLV K+ +
Sbjct: 23 FIAPFFILFAIFGLFPLLYTVWVS---LHDWTLLGGNQGFNWFAHYTRLVQDAKF---WN 76
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
++ T +FV + ++ +L + LA T + + FR+ LLP ++ IA ++V+
Sbjct: 77 SLYNTFGIFV-VAVVPQLLLAMYLA-DTLSRRIRAVNFFRMGLLLPYLTSIAAVAIVFSQ 134
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F G+ G +N +L G+ PI W Q + +W I + + +++ +A++
Sbjct: 135 LF-GTQFGLINYVLGFFGI--DPINW-QAGRFSSWVAIAVMIDWRWTGYNALIYLAAMSA 190
Query: 193 IPKELVIAARVDGASA----WQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
IP+E+ AA +DGAS WQI+ +L P + F +++ L T P +F V
Sbjct: 191 IPREIYEAAAIDGASRMRQFWQITIPMLRPTI--IFTVIVSTIGQMQLFTEPVIFGDVAG 248
Query: 249 DLVDRDYGTTLALYVFNTAFGRGEQDQGLAAA--AAVILSILGIIGGVITLKV 299
+ TT+ L +F AF G A A +I+ +L + ++T K+
Sbjct: 249 G-TQGQFQTTMML-IFEEAFRFNNYGYGSAIAWTLFMIIVVLSALNALLTSKI 299
>gb|AAF70321.1|AF260245_1 (AF260245) MalF [Vibrio cholerae]
Length = 283
Score = 74.9 bits (181), Expect = 1e-12
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 14/260 (5%)
Query: 53 VGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFR 112
+GT+N+ R+ F + + T++F +T+I ++ GL LA + + K + +R
Sbjct: 28 IGTHNFERVWKDEGIKEPFINIFIWTVIFSVLTVIFTLMIGLVLASVVQWEALKGRAVYR 87
Query: 113 LLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIF 172
+L +LP P + L++ F+ S G +N +L GL W + P A ++++
Sbjct: 88 VLLILPYAVPAFISILIFRGLFN-QSFGEINMVLN--GLFGLSPAWFSD-PLLAKTMVLI 143
Query: 173 VNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQF 232
VN +G + MI L IP +L A+ +DGA+ +I P+M +L F
Sbjct: 144 VNTWLGFPYMMIFCMGLLKAIPDDLYEASAIDGANFIHNFTKITLPMMIKPLTPLLIASF 203
Query: 233 LSLLTTYPHLFLLVEWD------LVDRDYGTTLALYVFNTAF-GRGEQDQGLAAAAAVIL 285
+ + LL + Y L Y + AF G G QD GLA+A A ++
Sbjct: 204 AFNFNNFVMIQLLTQGGPNRIGTSEPAGYTDLLVSYTYRIAFEGTGGQDFGLASAIATLI 263
Query: 286 SILGIIGGVITLKVLKFEEM 305
+L G + L L+F ++
Sbjct: 264 FLL---VGALALLNLRFTKL 280
>pir||G82397 maltose ABC transporter, permease protein VCA0944 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658381|gb|AAF96840.1| (AE004421) maltose ABC
transporter, permease protein [Vibrio cholerae]
Length = 524
Score = 74.9 bits (181), Expect = 1e-12
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 14/260 (5%)
Query: 53 VGTYNYYRLVHMFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFR 112
+GT+N+ R+ F + + T++F +T+I ++ GL LA + + K + +R
Sbjct: 269 IGTHNFERVWKDEGIKEPFINIFIWTVIFSVLTVIFTLMIGLVLASVVQWEALKGRAVYR 328
Query: 113 LLWLLPRMSPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIF 172
+L +LP P + L++ F+ S G +N +L GL W + P A ++++
Sbjct: 329 VLLILPYAVPAFISILIFRGLFN-QSFGEINMVLN--GLFGLSPAWFSD-PLLAKTMVLI 384
Query: 173 VNGLVGVSFGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQF 232
VN +G + MI L IP +L A+ +DGA+ +I P+M +L F
Sbjct: 385 VNTWLGFPYMMIFCMGLLKAIPDDLYEASAIDGANFIHNFTKITLPMMIKPLTPLLIASF 444
Query: 233 LSLLTTYPHLFLLVEWD------LVDRDYGTTLALYVFNTAF-GRGEQDQGLAAAAAVIL 285
+ + LL + Y L Y + AF G G QD GLA+A A ++
Sbjct: 445 AFNFNNFVMIQLLTQGGPNRIGTSEPAGYTDLLVSYTYRIAFEGTGGQDFGLASAIATLI 504
Query: 286 SILGIIGGVITLKVLKFEEM 305
+L G + L L+F ++
Sbjct: 505 FLL---VGALALLNLRFTKL 521
>emb|CAB90878.1| (AL355752) putative maltose permease [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 74.1 bits (179), Expect = 2e-12
Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 19/287 (6%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYL--------HDFVGTYNYYRLVHMF 65
++P+ +++ + L PL +Y++ T + N R + + FVG NY ++
Sbjct: 40 IAPVAVVIGVLVLYPLGYGLYLTLTDANSLNSARTIGVNEIEATYKFVGLDNYADILWGP 99
Query: 66 KYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAV 125
F + + TIV+ + + ++ GLGLAL + + +RL+ +LP P V
Sbjct: 100 TAYDRFWSHFIWTIVWTAVCVGLHFFIGLGLALL-LNQKLRGRTFYRLILVLPWAVPTFV 158
Query: 126 YSLVWYYFFHGSSIGTLNAILMRLGLINQPIP-WGQNVPWGAWSIIIFVNGLVGVSFGMI 184
W + + G +N+ L L L P P W ++ W +S I+ VN GV F M+
Sbjct: 159 TVFGWRFML--ADQGIINSALDWLHL---PTPAWLEDTFWQRFSAIM-VNTWCGVPFMMV 212
Query: 185 VFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFL 244
L I L A+ +DGA+AWQ R + P ++ V+ + + +FL
Sbjct: 213 SLLGGLQSIDNSLYEASEMDGANAWQRFRYVTLPGLRSVSSTVVLLGIIWTFNQFAVIFL 272
Query: 245 LVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGII 291
L D L + + FG+ +D +AA ++L + I+
Sbjct: 273 LFGNTAPD---AQILVTWAYQLGFGQQPRDFAQSAAYGILLLAILIV 316
>dbj|BAB07400.1| (AP001519) sugar ABC transporter (permease) [Bacillus halodurans]
Length = 293
Score = 74.1 bits (179), Expect = 2e-12
Identities = 64/288 (22%), Positives = 135/288 (46%), Gaps = 29/288 (10%)
Query: 8 RALSFFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLV--HMF 65
+ ++ ++ P ++++ + IP++LT Y G+ +W+ + F+G NY L+ MF
Sbjct: 9 KVIALYVLPALLLILVLIYIPIVLTGYY---GLMDWDGIGPM-TFIGLENYANLLVDKMF 64
Query: 66 ---KYDPTFKAV--ILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRM 120
Y A+ +L+ ++++ I+L++ G + K FR ++L+P +
Sbjct: 65 WSSAYHSLLLAIFSVLSLVIYLAISLVLT--GNI-----------KGADLFRKIFLIPML 111
Query: 121 SPIAVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVS 180
+ +W +H ++ G N L LG+ N P+ W + ++I I +
Sbjct: 112 LSSVAIAQLWMRIYHPTN-GVFNRFLTSLGIENPPL-WLSDTNIVLFAIFIPILWQYA-G 168
Query: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
F ++++ +AL +P ELV AA++DGA+ QI+ ++ PL+ + + L +
Sbjct: 169 FYILIYYAALRNVPNELVEAAQIDGATPLQIAYKVKLPLIAGVIKVTVVLAVIGSLKYFD 228
Query: 241 HLFLLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSIL 288
++++ D +A Y++ AF + G A +++ IL
Sbjct: 229 LIYVMT--DGGPNGASEVMASYMYKLAFRTNDFGYGSAIGFFLLILIL 274
>emb|CAC11274.1| (AL445063) inner membrane protein of trehalose/maltose (malF)
related protein [Thermoplasma acidophilum]
Length = 304
Score = 74.1 bits (179), Expect = 2e-12
Identities = 81/301 (26%), Positives = 133/301 (43%), Gaps = 28/301 (9%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
++ P+I ++ P+ + IY SFT + V Y + F+G NY +V F
Sbjct: 24 YVLPVIAVLIFLDFYPIGVGIYFSFTNLNV--VHFYDYSFIGLANYVSIVT----SSAFL 77
Query: 73 AVILTTIVF-VGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVW- 130
+IL TI++ VG T ++ V G LAL +R L L P P + L+W
Sbjct: 78 QIILHTIIWSVGSTALM-VPMGFALALVINQKGLIGKRFYRTLILFPWAYPAFITLLIWK 136
Query: 131 ----YYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVF 186
Y+F G +N +L +G+ + + W P A +I VN + + VF
Sbjct: 137 NMLSYHF------GIINEVLNAIGI--KGLFW-LGSPSLAMLSLILVNLWLSFPYYTYVF 187
Query: 187 TSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLV 246
T+++ IP EL AA +DG + RRI P++ F ++ + F+ + +FLL
Sbjct: 188 TASIQSIPSELYDAAEMDGYGTLRTLRRITIPMLSRQFAFITIFGFIFTWNNFYPVFLLT 247
Query: 247 -EWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEEM 305
L+ L Y + AF G+A A IL +L ++ V+ K K ++
Sbjct: 248 GGGPLISTQ---ILITYSYYEAFTYLAYGVGIAYAIISILILLVLV--VLANKYTKMMQV 302
Query: 306 I 306
+
Sbjct: 303 L 303
>emb|CAB61917.1| (AL133278) putative transport system permease protein [Streptomyces
coelicolor A3(2)]
Length = 310
Score = 72.6 bits (175), Expect = 6e-12
Identities = 72/296 (24%), Positives = 134/296 (44%), Gaps = 23/296 (7%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F +P +++ F L P + T+ SFT R +FVG N+ L+H D F
Sbjct: 33 FAAPGLLITGAFILYPFVSTLVNSFTDRRTL----VPGEFVGLANFRELLH----DDMFW 84
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMSPIAVYSLVWY 131
+ + ++V ++ L L L LA PG + FR + P ++ I V L+W
Sbjct: 85 IGLRNSSLYV--LGVVPALVLLPLLLALLVQKNIPGITFFRSAFYTPVVASIVVVGLIWV 142
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLV---GVSFGMIVFTS 188
+ G +N++L LG P+ + + W I++ G+ G+ + MI++ +
Sbjct: 143 WLL--DERGLVNSLLETLG--GSPVGFLSD----QWLILLSAMGVTVWKGLGYYMIIYLA 194
Query: 189 ALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW 248
AL +P+EL AA VDGA A + + P ++ + V ++ + ++L+
Sbjct: 195 ALANVPRELHEAAAVDGAGAVRRFLTVTVPAVRSTMVLVAALSSVAAFKVFSEVYLMAGP 254
Query: 249 DLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFEE 304
TTL + V T G + G A+A +V++ + ++ ++ L+ + E+
Sbjct: 255 SGGPAGEDTTLVMLVQRTGTGLTGR-VGYASAISVVVFAVTVVLMLLVLRADRKED 309
>dbj|BAB05739.1| (AP001514) maltose/maltodextrin transport system (permease)
[Bacillus halodurans]
Length = 418
Score = 71.8 bits (173), Expect = 1e-11
Identities = 70/281 (24%), Positives = 120/281 (41%), Gaps = 12/281 (4%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMRNWNVERY----LHDFVGTYNYYRLVHMFKYDPTF 71
P + ++ + P++ + ++FT N+N+ L D+VG + ++ + + TF
Sbjct: 127 PSLFILIFAVIFPILFSFALAFT---NYNLYHSPPANLVDWVGLETFSKIFTVDIWRATF 183
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWY 131
V+ T+++ + V G+ LA+ + FR + +LP P V L++
Sbjct: 184 FDVLSWTVIWTLVASTFQVSLGILLAVVVNQKDLQFKKFFRTILILPWAVPGFVTILIFA 243
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
F+ S N IL G+ PIPW N W ++I + G +G + +V T L
Sbjct: 244 GLFNDSFGAINNDILAAFGI--DPIPWMTNSTWTKVALIT-IQGWLGFPYIFLVTTGVLQ 300
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWD-- 249
IP +L AA +DGAS + R I P++ V+ QF + ++L
Sbjct: 301 SIPDDLYEAATIDGASVFSKFRHITLPMILIAIAPVIITQFTFNFNNFNIIYLFNGGGPA 360
Query: 250 LVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGI 290
+ G T L + LAAA ++LSI I
Sbjct: 361 MPGSTAGGTDILVSWIYKLTMQSSQYSLAAALTILLSIFVI 401
>pir||T36913 probable integral membrane sugar transport protein - Streptomyces
coelicolor >gi|5420008|emb|CAB46400.1| (AL096743)
putative integral membrane sugar transport protein
[Streptomyces coelicolor A3(2)]
Length = 314
Score = 71.4 bits (172), Expect = 1e-11
Identities = 75/295 (25%), Positives = 130/295 (43%), Gaps = 34/295 (11%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWN-VERYLHDFVGTYNYYRLVHMFKYDPTFK 72
L P +I + + +P + T+ ISF +WN + F G NY ++ DP +
Sbjct: 35 LLPALIFMIVVTQLPFVATLVISFF---DWNALYPDARSFTGFANYGDVLS----DPALR 87
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ TTI+ ++++++ GL LAL + G R L + P + +L+W +
Sbjct: 88 KSVWTTILLTVAVVLVSLVLGLALALLLDRRFKGRG-VVRTLLIAPFLVVPVAAALLWKH 146
Query: 133 FFHGSSIGTLNAILMRLGLINQPIP-WGQNVPWGAWSIIIFVNGLVG--VSFGMIVFTSA 189
+ G LN +L +G P P W N P ++ LV F M++ +
Sbjct: 147 VLYNPEYGLLNGLLHYVG---GPQPDWISNTP-----LLAVEASLVWQWTPFMMLILLAG 198
Query: 190 LNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWD 249
L ++ + AARVDGA WQI + P ++ ++L L ++++ +D
Sbjct: 199 LQSRDQQQIEAARVDGAGDWQIFVHLTLPHLR---------RYLELGALLGSIYIVQNFD 249
Query: 250 LV----DRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
V GT Y +F + ++ GLA+AA V++ I II L+V+
Sbjct: 250 AVFTITSGGLGTANLPYTVYQSFYQAHEN-GLASAAGVLVVIGSIIIATFALRVV 303
>pir||F75187 probable sugar abc transporter, permease protein PAB2334 -
Pyrococcus abyssi (strain Orsay)
>gi|5457458|emb|CAB48949.1| (AJ248283) probable SUGAR
ABC TRANSPORTER, PERMEASE PROTEIN [Pyrococcus abyssi]
Length = 284
Score = 71.4 bits (172), Expect = 1e-11
Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 26/291 (8%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKA 73
L+P ++ + F PLI +Y++FT ++++ V DPTF
Sbjct: 13 LTPAVVYLLFFIGYPLIQALYLAFTKNGAFSLDT--------------VRRAISDPTFWE 58
Query: 74 VILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYF 133
+ TI+ + + + ++ L LALA + L + +S +A L+WY
Sbjct: 59 ALKYTILLALVIVPVQLILALVLALAVNRAFKGKDLTIYALVIPLTISDVAA-GLIWYTM 117
Query: 134 FHGSSIGTLNAILMRLGLINQPIPW-GQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
S G +N +L+ LG+I+ PI + G + I+ + ++ + L
Sbjct: 118 L--SDYGFINKLLLNLGIISSPIHFFGYEYRMMEFLAIVIAEVWRATAIVFVIILAGLQM 175
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVD 252
I +E + AA V GA W RRI+ P++K L + L + + V W L
Sbjct: 176 ISREYLEAAEVFGAGYWTRLRRIVIPMLKPSIQSALIIRTLFAMQVFG-----VVWILAG 230
Query: 253 RDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKFE 303
RD + +D G+A+ A+ +++L I G + +K LK E
Sbjct: 231 RDIPVLAGEGFYQLT---EIKDYGVASIYALTIALLSIFLGALYVKFLKAE 278
>pir||T47064 hypothetical protein [imported] - Yersinia pestis
>gi|4106652|emb|CAA21407.1| (AL031866) ORF82, len=286
aa, probable ABC transporter protein, similar to many,
eg: AE000089_2 Rhizobium sp., (309aa), 37.6% identity in
266 aa overlap, Fasta scores: opt:674, E(): 0, or
Thermococcus litoralis, O51924 inner membrane protein
MalF, 36.8>
Length = 286
Score = 70.6 bits (170), Expect = 2e-11
Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 26/292 (8%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
F P+++++ L L IY+S + + + DF+G N+ ++ +P
Sbjct: 10 FTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPF--DFIGMANFIEVLQ----EPRMW 63
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAF-RLLWLLPRMSPIAVYSLVWY 131
+ + T+V+V + + ++ LG A+A F + G R L LLP + V L+W
Sbjct: 64 SSLWNTLVYVAGSTVAELV--LGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWR 121
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALN 191
F+ ++ G N + +G+ PI W N P A + +I + F +++ ++ L+
Sbjct: 122 IFYDPNA-GLFNWLAGLIGI--PPIDWLGN-PSTAMASLILADIWQWTPFIILLVSAGLD 177
Query: 192 QIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLV 251
+P E + AA +DGA W++ I P+MK L L + + ++ ++++
Sbjct: 178 ALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRG--- 234
Query: 252 DRDYGTTLALYVFNT-AFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKF 302
G LA N A+ G QD ++AA ++ II ++ + VL F
Sbjct: 235 ----GPALATETTNMYAYLTGFQDFRISAAV-----VIAIINTLLVIAVLSF 277
>dbj|BAB07565.1| (AP001520) ABC transporter (permease) [Bacillus halodurans]
Length = 328
Score = 70.6 bits (170), Expect = 2e-11
Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 39/294 (13%)
Query: 13 FLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFK 72
FL+P I+++ +F + T Y+S + NWN F G NY L F++ +
Sbjct: 38 FLAPSILLIGVFIYGFIGWTGYVSLS---NWNSLVPDFSFAGLKNYLFLFQDFRFQADLR 94
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+ TI+F+G +++ G G+A+ + S FR ++ P V +VW +
Sbjct: 95 NTLFFTILFIGAVIVL----GQGIAIL-LDQKIRQESLFRNIFFFPMALSFVVTGVVWQW 149
Query: 133 FFHGSSIGTLNAILMRLGL---------INQPIPWGQ---NVPWGAWSIIIFVNGLVGVS 180
+ S+ +N L R GL I I G+ +P +++I +
Sbjct: 150 LLNPST--GVNLFLERFGLDSRWYTDTTIVPAISLGKIEFGLPVAMIAVVIAAVWQM-TG 206
Query: 181 FGMIVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYP 240
F + ++ + L IP ++ AAR+DGA+ +Q+ +++ PL++ +T +S++
Sbjct: 207 FAVAMYLAGLRGIPDDVREAARMDGANEFQVYWKVILPLLR-----PIT---MSVIIIMA 258
Query: 241 HLFLLVEWDLVDRDYG-------TTLALYVFNTAFGRGEQDQGLAAAAAVILSI 287
H+ L + +DL+ G +Y+F T F QG A A +++S+
Sbjct: 259 HISLKI-FDLIFAMTGPGANFVTDVPGVYMFETTFRGNFYGQGSAIAIIMLVSV 311
>pir||T35790 probable transmembrane sugar transport protein - Streptomyces
coelicolor >gi|3288623|emb|CAA19795.1| (AL031013)
putative transmembrane sugar transport protein
[Streptomyces coelicolor A3(2)]
Length = 342
Score = 70.2 bits (169), Expect = 3e-11
Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 23/289 (7%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLH-DFVGTYNYYRLVHMFKYDPTFK 72
L P +++ L +L+P+++ I +SF + + + + + G N+ V P +
Sbjct: 43 LLPALLLELLVHLVPMVIGIVMSFKELTQFYIRDWTTAPWAGLDNFTMSVDFDA--PVGE 100
Query: 73 AVILTTIVFVGITLI-INVLGGLGLALATFFMSEKPGSAF-RLLWLLPRMSPIAVYSLVW 130
A++ + +V T++ + + +G A A G R ++L+P P+ + W
Sbjct: 101 ALLHSFLVTCAFTILSVGLCWLIGTAAAICMQDAFRGRGLLRAIFLVPYALPVYAAVITW 160
Query: 131 YYFFHGSSIGTLNAILM-RLGLINQPIPW--GQNVPWGAWSIIIFVNGLVGVSFGMIVFT 187
+ F + G +N +L +LGL ++P W G N ++ ++ V+ G F ++
Sbjct: 161 AFMFQHDN-GLVNHVLHDQLGLTDKPSFWLIGDN----SFVALLVVSVWKGWPFAFLIVM 215
Query: 188 SALNQIPKELVIAARVDGASAWQISRRI----LFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
+ L IPKEL AA +DGA WQ RRI L P+ + L + W F T +
Sbjct: 216 AGLQNIPKELYEAAALDGAGVWQQIRRITLPSLRPVNQVLVLVLFLWTFNDFNTPF---- 271
Query: 244 LLVEWDLVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIG 292
V + + ++++++ ++F G A + ++L +L + G
Sbjct: 272 --VLFGKAAPEAADLISIHIYQSSFVTWNFGAGSAMSVLLLLFLLLVTG 318
>gb|AAC04469.1| (AF007800) MtlF [Pseudomonas fluorescens]
Length = 296
Score = 69.9 bits (168), Expect = 4e-11
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 17/290 (5%)
Query: 12 FFLSPMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTF 71
F ++P + ++ L+ ++PL +T+Y S +R + + FVG N+ F D F
Sbjct: 15 FLVTPSVALLLLWMIVPLGMTLYFSL--IRYNLLYPGENQFVGLENFT----YFITDSGF 68
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAF-RLLWLLPRMSPIAVYSLVW 130
T++ VG L+I+V+ G+ L A SE G R+L + P V +L+W
Sbjct: 69 LPGATNTLLLVGSVLLISVVFGV-LISALLEASEFLGRGIVRVLLISPFFIMPTVGALIW 127
Query: 131 YYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSAL 190
G L A+ G +P+ W + P SIII V+ + F +++ +A+
Sbjct: 128 KNLIFHPVSGILAAVWKFFGA--EPVDWLAHYP--LLSIIIIVSWQ-WLPFAILLLMTAM 182
Query: 191 NQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDL 250
+ +E AAR+DGA A I + P + V+ + + LL+ + +F
Sbjct: 183 QSLDQEQKEAARLDGAGAIAIFWHLTLPHLARPIAVVVMIETIFLLSVFAEIFTTTNGG- 241
Query: 251 VDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVL 300
T LA ++N A + D G+A+A +I ++ I +I ++++
Sbjct: 242 -PGYASTNLAYLIYNQAL--VQFDVGMASAGGLIAVVIANIAAIILVRMI 288
>pir||T46751 inner membrane protein malF [validated] - Thermococcus litoralis
>gi|2828821|gb|AAC38137.1| (AF012836) inner membrane
protein MalF [Thermococcus litoralis]
Length = 300
Score = 69.9 bits (168), Expect = 4e-11
Identities = 69/288 (23%), Positives = 132/288 (44%), Gaps = 19/288 (6%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKAVI 75
P++ +V +F ++P++ T +IS + E+ FVG NY R++ ++ + +
Sbjct: 28 PLLTVVLVFIILPVMGTFWISLHRDVTFIPEK---PFVGLRNYLRVLSAREF--WYSTFV 82
Query: 76 LTTIVFVGITLIINVLGGLGLALATFFMSEKPG-SAFRLLWLLPRMSPIAVYSLVWYYFF 134
+ FV ++L LGL+ A G R + L+P P + + W +
Sbjct: 83 TVSFSFVSVSLETI----LGLSFALILNERLKGRGVLRAIVLIPWAVPTIISARTWELMY 138
Query: 135 HGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIP 194
+ S G N IL LG+ P+ W P A+ I+ + ++ + L IP
Sbjct: 139 N-YSYGLFNWILSILGV--SPVNW-LGTPISAFFAIVIADVWKTTPLMTLLLLAGLQAIP 194
Query: 195 KELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWDLVDRD 254
++L AA +DGAS ++ + I PL+K + L + + L + +++L
Sbjct: 195 QDLYEAALIDGASMFERFKSITLPLLKPVLIVALILRTIDALRVFDIIYVLTGGG--PGG 252
Query: 255 YGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKF 302
T+++L FN + G D G+ +A +++ +L + ++ LKV +F
Sbjct: 253 ATTSISLLAFN-YYNLG--DYGIGSAISILTFVLVLSFTIVYLKVGRF 297
>pir||E72357 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4981115|gb|AAD35681.1|AE001734_8
(AE001734) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 420
Score = 69.9 bits (168), Expect = 4e-11
Identities = 65/233 (27%), Positives = 109/233 (45%), Gaps = 20/233 (8%)
Query: 70 TFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLV 129
T VIL+ + I+L+I +L + FF R + +P ++ + SLV
Sbjct: 196 TLYYVILSVPSQIFISLMIALLLNSNVKFRVFF---------RTAYFIPFVTSVVAISLV 246
Query: 130 WYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSA 189
W + F+ G LN IL + +PI W ++ W +I I V+ V + ++F +
Sbjct: 247 WKWIFN-DEFGLLNYILSLFNI--EPISWLKDERWTIPTIAI-VSVWKTVGYDAVIFLAG 302
Query: 190 LNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEWD 249
L I + AA VDGAS+ Q I +PL+ ++L + + +++L +D
Sbjct: 303 LQNIDRSYYEAAEVDGASSLQKFFYITWPLLSPTTFFLLIVSLIGAFKVFAEVYVL--YD 360
Query: 250 LVDRDY---GTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKV 299
+ Y G TL YVF+ + +Q G+A+AAA IL + +I I +V
Sbjct: 361 GLPGPYNNSGMTLVYYVFDLFY--RQQRMGIASAAAYILFAIILIFTFIQYRV 411
>gb|AAK42958.1| ABC transporter, permease (glucose) [Sulfolobus solfataricus]
Length = 286
Score = 69.5 bits (167), Expect = 5e-11
Identities = 58/217 (26%), Positives = 100/217 (45%), Gaps = 8/217 (3%)
Query: 17 MIIMVALFYLIPLILTIYISFTGMRNWNVERYLHDFVGTYNYYRLVHMFKYDPTFKAVIL 76
++ A+F I L L I+ + NW++ FVG Y ++ F++ + I
Sbjct: 9 LVAPTAIFSAILLYLVIWNAVMSFMNWSLLNSKPTFVGLETYSIVIRTFQFTNSLLHSIE 68
Query: 77 TTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYYFFHG 136
+++ V +I N+LG AL F S K S F + + P +AV L+W + F+
Sbjct: 69 LSVILV---VIGNILGIFIAALLYFLNSNKARSTFLSIVIYPLSISMAVNGLIWLWLFN- 124
Query: 137 SSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQIPKE 196
IG ++ +L+R+GL PW + + ++ V+ + + + I K
Sbjct: 125 IHIG-VDWLLVRIGL--PQFPWLSSTS-TMFPSLVLVSVWAYTGIAALFYLAGFMNIDKT 180
Query: 197 LVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFL 233
+V AAR+DG SA++I +IL P F+ FL
Sbjct: 181 IVEAARLDGTSAFKILYKILIPNSLNSFIIATALLFL 217
>sp|Q04698|MALC_STRPN MALTODEXTRIN TRANSPORT SYSTEM PERMEASE PROTEIN MALC
>gi|479207|pir||S32570 malC protein - Streptococcus
pneumoniae >gi|153724|gb|AAA26926.1| (L08611) MalC
[Streptococcus pneumoniae]
Length = 430
Score = 69.1 bits (166), Expect = 7e-11
Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 18/303 (5%)
Query: 16 PMIIMVALFYLIPLILTIYISFTGMRNWNVERY----LHDFVGTYNYYRLVHMFKYDPTF 71
P + + + P+I+T+ I+FT N++ + L D+VG N+ + + + F
Sbjct: 130 PSYVAMTFAIIFPVIVTLMIAFT---NYDFQHLPPNKLLDWVGLTNFTNIWSLSTFRSAF 186
Query: 72 KAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWY 131
+V+ TI++ + ++ G+ A+ K F +++ P + L +
Sbjct: 187 GSVLSWTIIWALAASTLQIVIGIFTAIIANQPFIKGKRIFGVIFPSSLAVPAFITILTFS 246
Query: 132 YFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGA---WSII--IFVNGLVGVSFGMIVF 186
F+ S+G +N ++ + P G +PW W+ I I + G +G + ++
Sbjct: 247 NMFN-DSVGAINTQVLPILAKFLPFLDGALIPWKTDPTWTKIALIMMQGWLGFPYIYVLT 305
Query: 187 TSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLV 246
L IP +L AA +DGA+AWQ R I FP++ L Q+ + ++L
Sbjct: 306 LGILQSIPNDLYEAAYIDGANAWQKFRNITFPMILAVAAPTLISQYTFNFNNFSIMYLFN 365
Query: 247 EW--DLVDRDYGTT--LALYVFNTAFGRGEQDQGLAAAAAVILSILGIIGGVITLKVLKF 302
V G+T L +++ G Q +AAA +I+SI+ I +I K L
Sbjct: 366 GGGPGSVGGGAGSTDILISWIYRLTTGTSPQ-YSMAAAVTLIISIIVISISMIAFKKLHA 424
Query: 303 EEM 305
+M
Sbjct: 425 FDM 427
>emb|CAB61178.1| (AL132973) putative binding protein dependent transport protein.
[Streptomyces coelicolor A3(2)]
Length = 328
Score = 68.7 bits (165), Expect = 9e-11
Identities = 70/288 (24%), Positives = 133/288 (45%), Gaps = 23/288 (7%)
Query: 9 ALSFFLSPMIIMVALFYLIPLILTIYISF-----TGMRNWNVERYLHDFVGTYNYYRLVH 63
A ++P ++ +LIP+ +Y+SF G+ + ER + FVG +Y ++
Sbjct: 39 AAGVLMTPFFALLVTVFLIPVGTAVYLSFFSDDQPGL-GFGPERQV--FVGLRSYAAVLT 95
Query: 64 MFKYDPTFKAVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPI 123
DPTF + T ++ I + + V+G L LAL + +L LP P
Sbjct: 96 ----DPTFLGGLGTVALYCLIYIPLMVVGALALALLLDSGVVRLRGLAQLGLFLPHAVPG 151
Query: 124 AVYSLVWYYFFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGM 183
+ +L+W Y + + L G I V +I ++ N + + M
Sbjct: 152 IIAALIWLYLYTPGISPVIE--LFAKGDITIDFLGVHTVIPSIVNIALWSN----LGYNM 205
Query: 184 IVFTSALNQIPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLF 243
+VF +AL +P+E++ A+ VDGA + + ++ PL++ + V + + L +
Sbjct: 206 VVFYAALQAVPREVIEASVVDGAGPVRTALQVKTPLVRASIVMVAIFTLIWALQLFTEPM 265
Query: 244 LLVEWD-LVDRDYGTTLALYVFNTAFGRGEQDQGLAAAAAVILSILGI 290
LL + +++ + ++Y+++ AF R + LAAAA+V+L + I
Sbjct: 266 LLSQSSPMINSRFSP--SMYIYDAAFTR--NNYSLAAAASVVLLVCTI 309
>dbj|BAB06644.1| (AP001517) maltose/maltodextrin transport system (permease)
[Bacillus halodurans]
Length = 430
Score = 68.7 bits (165), Expect = 9e-11
Identities = 66/280 (23%), Positives = 127/280 (44%), Gaps = 10/280 (3%)
Query: 14 LSPMIIMVALFYLIPLILTIYISFTGMRNWNVE-RYLHDFVGTYNYYRLVHMFKYDPTFK 72
+ P +I + + PL+ + ++FT +N R L D+VG N+ +LV + + TF
Sbjct: 135 IGPGLIFLIFTVVFPLLFMLGLAFTNYNLYNAPPRNLLDWVGFDNFVQLVTVPIWRETFF 194
Query: 73 AVILTTIVFVGITLIINVLGGLGLALATFFMSEKPGSAFRLLWLLPRMSPIAVYSLVWYY 132
+V T+++ + + GL LA+ K R + +LP P V L++
Sbjct: 195 SVFSWTLIWTFVATSCQIALGLFLAMMVNDPRIKFKKFIRTILILPWAVPAFVTILIFSA 254
Query: 133 FFHGSSIGTLNAILMRLGLINQPIPWGQNVPWGAWSIIIFVNGLVGVSFGMIVFTSALNQ 192
F+ + G +N ++ + L PW + W +++I+ L G F +FT L
Sbjct: 255 MFN-DNFGAINRDIL-IPLFGHGAPWLTDPFWSRFALIMIQTWL-GFPFVFALFTGVLQS 311
Query: 193 IPKELVIAARVDGASAWQISRRILFPLMKWHFLYVLTWQFLSLLTTYPHLFLLVEW--DL 250
I + AA +DGA+ Q R I P + + +L Q+ + ++L + +
Sbjct: 312 ISSDWYEAADMDGANRLQKFRHITMPHILFATAPLLIMQYAGNFNNFTIIYLFNQGGPPI 371
Query: 251 VDRDYGTT--LALYVFNTAFGRGEQDQGLAAAAAVILSIL 288
++ G T L +V++ F + +AAA ++I+ ++
Sbjct: 372 RGQNAGGTDILISWVYSLTFENSQ--YSMAAAISIIIGLI 409
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.146 0.463
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118071057
Number of Sequences: 2977
Number of extensions: 5017231
Number of successful extensions: 23471
Number of sequences better than 1.0e-10: 86
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 23319
Number of HSP's gapped (non-prelim): 95
length of query: 313
length of database: 189,106,746
effective HSP length: 48
effective length of query: 265
effective length of database: 160,379,370
effective search space: 42500533050
effective search space used: 42500533050
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)