BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2234 (PAB2234) DE:GTP-BINDING PROTEIN
(190 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75207 GTP-binding protein PAB2234 - Pyrococcus abyssi (str... 383 e-106
pir||F71242 hypothetical protein PH0200 - Pyrococcus horikoshii ... 348 3e-95
sp|Q57768|Y320_METJA HYPOTHETICAL GTP-BINDING PROTEIN MJ0320 >gi... 173 1e-42
gb|AAG20631.1| (AE005133) Vng2587c [Halobacterium sp. NRC-1] 139 3e-32
gi|11498924 conserved hypothetical protein [Archaeoglobus fulgid... 132 3e-30
sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|74505... 78 5e-14
pir||C72252 conserved hypothetical protein - Thermotoga maritima... 72 4e-12
>pir||G75207 GTP-binding protein PAB2234 - Pyrococcus abyssi (strain Orsay)
>gi|5457619|emb|CAB49110.1| (AJ248283) GTP-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 190
Score = 383 bits (974), Expect = e-106
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MATIVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGL 60
MATIVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGL
Sbjct: 1 MATIVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGL 60
Query: 61 PKEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRE 120
PKEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRE
Sbjct: 61 PKEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRE 120
Query: 121 LNIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE 180
LNIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE
Sbjct: 121 LNIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE 180
Query: 181 IIRERRGQRE 190
IIRERRGQRE
Sbjct: 181 IIRERRGQRE 190
>pir||F71242 hypothetical protein PH0200 - Pyrococcus horikoshii
>gi|3256586|dbj|BAA29269.1| (AP000001) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 348 bits (883), Expect = 3e-95
Identities = 168/189 (88%), Positives = 181/189 (94%)
Query: 1 MATIVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGL 60
MATI+F GRSNVGKSTLIYRLTGK+VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFM GL
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGL 60
Query: 61 PKEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRE 120
PKEVQERIKDEIVHFIEDNA IDVAVLVVDGKAAPEII+RWEKRGEIPIDVEFYQFLRE
Sbjct: 61 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 120
Query: 121 LNIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE 180
L+IPT+VAVNKLDKIKNVQ V++FLAEKFEVP EIDK FIPISAKFGDN+E+LKNRI+E
Sbjct: 121 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 180
Query: 181 IIRERRGQR 189
+IRER+G+R
Sbjct: 181 VIRERQGRR 189
>sp|Q57768|Y320_METJA HYPOTHETICAL GTP-BINDING PROTEIN MJ0320 >gi|2128237|pir||A64340
hypothetical protein MJ0320 - Methanococcus jannaschii
>gi|1591040|gb|AAB98305.1| (U67486) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 219
Score = 173 bits (435), Expect = 1e-42
Identities = 88/185 (47%), Positives = 130/185 (69%), Gaps = 6/185 (3%)
Query: 4 IVFVGRSNVGKSTLIYRLTGKR-VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGLPK 62
++ VGRSNVGKST + +TG++ +R GK+PGVT KI E + + ++DMPGFG+MAGLPK
Sbjct: 27 VIVVGRSNVGKSTFVRLMTGRKDIRVGKKPGVTLKINEYDMGEYILVDMPGFGYMAGLPK 86
Query: 63 EVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRELN 122
+VQE+IKDEIVH+IE++A +I AV ++D K+ EI+ERW+ RGEIPID+E + F+ +L
Sbjct: 87 KVQEKIKDEIVHYIEEHADEIAAAVQIIDTKSFFEIVERWKGRGEIPIDLEMFDFITDLK 146
Query: 123 IPTVVAVNKLDKIKNVQ--RVVHFLAE--KFEVPWDEIDKTFIPISAKFGDNVEKLKNRI 178
I ++ NK+DKIK + V+ + E K + PW + K +P K G +E++K +I
Sbjct: 147 ISPILVANKMDKIKKEEWDAVLDGICEYLKCQPPWHQW-KFIVPAILKEGKGIEEIKKKI 205
Query: 179 YEIIR 183
E +R
Sbjct: 206 LERVR 210
>gb|AAG20631.1| (AE005133) Vng2587c [Halobacterium sp. NRC-1]
Length = 206
Score = 139 bits (346), Expect = 3e-32
Identities = 75/179 (41%), Positives = 114/179 (62%), Gaps = 5/179 (2%)
Query: 4 IVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEW--KNHKIIDMPGFGFMAGLP 61
+V VGRSNVGKSTL+ +TG +V G++PGVTR+ +W ++ + D+PGFG+M G+
Sbjct: 12 VVLVGRSNVGKSTLMRAVTGHQVPTGQKPGVTRQPNHFDWASEDFMLTDLPGFGYMQGVE 71
Query: 62 KEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLREL 121
+E IK E+V ++E +A I V VLV+DGKAA +II+R EIP VE Y L EL
Sbjct: 72 DGHEEAIKTEVVRYVESHADNIMVGVLVLDGKAAVDIIDRHSGGDEIPHVVELYYLLEEL 131
Query: 122 NIPTVVAVNKLDKIKNVQRVVHFLAEKFEV--PWDEIDKTFIPISAKFGDNVEKLKNRI 178
+ VVAVNK+DK+ + ++ +A++ + PW++ PI+AK D + L++ +
Sbjct: 132 GVQPVVAVNKMDKVDDRDERLNDIADRLGLYPPWEQWQDVIAPITAK-KDRIAALEDAV 189
>gi|11498924 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448984|pir||E69415 conserved hypothetical protein
AF1326 - Archaeoglobus fulgidus
>gi|2649250|gb|AAB89919.1| (AE001012) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 197
Score = 132 bits (329), Expect = 3e-30
Identities = 69/182 (37%), Positives = 108/182 (58%), Gaps = 6/182 (3%)
Query: 4 IVFVGRSNVGKSTLIYRLTGKRVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMAGLPKE 63
++F GRSNVGKSTL L VR+GK+PG T + + + D+PGFG+++G +
Sbjct: 6 VIFAGRSNVGKSTLFSALFKFEVRKGKKPGTTIRPNSFQVGSVIFTDLPGFGYVSGYSRN 65
Query: 64 VQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRELNI 123
ER+KD +V +IE NA +I +V V+D + EI ERWEKRG IP+++E ++FL ++
Sbjct: 66 FSERVKDFVVEYIETNARRIVASVEVIDASSFLEIAERWEKRGYIPVEIEMFEFLNDVTP 125
Query: 124 PTVVAVNKLDK---IKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE 180
+A NK+DK I N+ ++ L + PW++ P+ AK G+ V LK + +
Sbjct: 126 RVFLAANKMDKVDDITNLNKIAEMLG--MQPPWEKWRHVIYPVCAKKGE-VSALKRDLKQ 182
Query: 181 II 182
+
Sbjct: 183 YL 184
>sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|7450585|pir||A70465 probable
GTP binding protein - Aquifex aeolicus
>gi|2984183|gb|AAC07715.1| (AE000763) GTP binding
protein Era [Aquifex aeolicus]
Length = 433
Score = 78.4 bits (190), Expect = 5e-14
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 26/186 (13%)
Query: 4 IVFVGRSNVGKSTLIYRLTGKRVRRGK-RPGVTRKIIE--IEWKNHKIIDMPGFGFMAGL 60
+V +GR NVGKSTL R+ GKR + PGVTR IE EW + I + GL
Sbjct: 5 VVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVD----TGGL 60
Query: 61 PKEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLRE 120
E ++ + E+ +E K DV + VVDG K G P+D E ++L
Sbjct: 61 VPETKDELIREVKKVVEQEIPKADVILFVVDG-----------KEGLNPLDQEIAKYLYP 109
Query: 121 LNIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYE 180
++ VNK+D ++ + V F FE PISA+ G V +L + + +
Sbjct: 110 YADKVLLVVNKIDNLRQEKNVAEFYTLGFE--------KIFPISAQHGKGVGELLDEVVK 161
Query: 181 IIRERR 186
++E +
Sbjct: 162 YLKEEK 167
>pir||C72252 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982031|gb|AAD36534.1|AE001797_14 (AE001797)
conserved hypothetical protein [Thermotoga maritima]
Length = 195
Score = 72.2 bits (174), Expect = 4e-12
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 4 IVFVGRSNVGKSTLIYRLTGKRVR-RGKRPGVTRKI-IEIEWKNHKIIDMPGFGFMAGLP 61
+ FVGRSNVGKS+L+ L +++ K PG TR I + + +D+PG+G+
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85
Query: 62 KEVQERIKDEIVHFIEDNASKIDVAVLVVDGKAAPEIIERWEKRGEIPIDVEFYQFLREL 121
KE + +V N + + L+VDG+ P+ D+ ++++ L
Sbjct: 86 KE--RMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-----------DSDLMMVEWMKSL 132
Query: 122 NIPTVVAVNKLDKIKNVQRVVHFLAEKFEVPWDEIDKTFIPISAKFGDNVEKLKNRIYEI 181
NIP + + K+DK+K +R L E +V + T IP S+ G+ + +L + I +
Sbjct: 133 NIPFTIVLTKMDKVKMSERAKK-LEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191
Query: 182 IRE 184
++E
Sbjct: 192 LKE 194
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69296947
Number of Sequences: 2977
Number of extensions: 2935853
Number of successful extensions: 10296
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10285
Number of HSP's gapped (non-prelim): 8
length of query: 190
length of database: 189,106,746
effective HSP length: 53
effective length of query: 137
effective length of database: 157,386,935
effective search space: 21562010095
effective search space used: 21562010095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)