BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2235 (PAB2235) DE:Hypothetical protein
         (393 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75207 hypothetical protein PAB2235 - Pyrococcus abyssi (st...   804  0.0
pir||B71242 hypothetical protein PH0196 - Pyrococcus horikoshii ...   658  0.0
pir||F69177 hypothetical protein MTH586 - Methanobacterium therm...   164  2e-39

>pir||D75207 hypothetical protein PAB2235 - Pyrococcus abyssi (strain Orsay)
           >gi|5457616|emb|CAB49107.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 393
           
 Score =  804 bits (2054), Expect = 0.0
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 1   MLDPFSEKAKELLKEFGSINDFLNSIPRIVDVEEVIERVKIASDRKLLEGFVDIEDIKDL 60
           MLDPFSEKAKELLKEFGSINDFLNSIPRIVDVEEVIERVKIASDRKLLEGFVDIEDIKDL
Sbjct: 1   MLDPFSEKAKELLKEFGSINDFLNSIPRIVDVEEVIERVKIASDRKLLEGFVDIEDIKDL 60

Query: 61  AQFYALLGALSYSPYGLELELVKKANILLYSERIRREKEIRPEEISLRINKAIEFPIDDL 120
           AQFYALLGALSYSPYGLELELVKKANILLYSERIRREKEIRPEEISLRINKAIEFPIDDL
Sbjct: 61  AQFYALLGALSYSPYGLELELVKKANILLYSERIRREKEIRPEEISLRINKAIEFPIDDL 120

Query: 121 KKIERVFGKLPEYTIHLAEFLDLIPGERLSEYYIYNGNVYLRKEDLIKVWMKAFERNIEK 180
           KKIERVFGKLPEYTIHLAEFLDLIPGERLSEYYIYNGNVYLRKEDLIKVWMKAFERNIEK
Sbjct: 121 KKIERVFGKLPEYTIHLAEFLDLIPGERLSEYYIYNGNVYLRKEDLIKVWMKAFERNIEK 180

Query: 181 SVNMLYEIRDELPGFFREVLGGIKEVAEQEFGKSGEVKAGTLRPDLFPPCVKNALKGVPQ 240
           SVNMLYEIRDELPGFFREVLGGIKEVAEQEFGKSGEVKAGTLRPDLFPPCVKNALKGVPQ
Sbjct: 181 SVNMLYEIRDELPGFFREVLGGIKEVAEQEFGKSGEVKAGTLRPDLFPPCVKNALKGVPQ 240

Query: 241 GLRNYAITVLLTSFLSYARICPNPPRRNVRVKDCIDDIRIITDEILPLIIEAANRCSPPL 300
           GLRNYAITVLLTSFLSYARICPNPPRRNVRVKDCIDDIRIITDEILPLIIEAANRCSPPL
Sbjct: 241 GLRNYAITVLLTSFLSYARICPNPPRRNVRVKDCIDDIRIITDEILPLIIEAANRCSPPL 300

Query: 301 FEDQPNEIKNIWYHLGFGYTANPKLEDSGNSTWYFPPNCDKIRANAPQLCTPDKHCKYVR 360
           FEDQPNEIKNIWYHLGFGYTANPKLEDSGNSTWYFPPNCDKIRANAPQLCTPDKHCKYVR
Sbjct: 301 FEDQPNEIKNIWYHLGFGYTANPKLEDSGNSTWYFPPNCDKIRANAPQLCTPDKHCKYVR 360

Query: 361 NPLTYYLRRLYLEGRKNASKGGNERGEKRVLQQ 393
           NPLTYYLRRLYLEGRKNASKGGNERGEKRVLQQ
Sbjct: 361 NPLTYYLRRLYLEGRKNASKGGNERGEKRVLQQ 393


>pir||B71242 hypothetical protein PH0196 - Pyrococcus horikoshii
           >gi|3256582|dbj|BAA29265.1| (AP000001) 397aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 397
           
 Score =  658 bits (1679), Expect = 0.0
 Identities = 298/394 (75%), Positives = 361/394 (90%), Gaps = 1/394 (0%)

Query: 1   MLDPFSEKAKELLKEFGSINDFLNSIPRIVDVEEVIERVKIASDRKLLEGFVDIEDIKDL 60
           MLDPFSEKAKELLK FGSINDF+++IP+IV V++VIER+++  + KL++ F+D +++ DL
Sbjct: 4   MLDPFSEKAKELLKGFGSINDFMDAIPKIVSVDDVIERIRVVKNEKLIDKFLDQDNVMDL 63

Query: 61  AQFYALLGALSYSPYGLELELVKKANILLYSERIRREKEIRPEEISLRINKAIEFPIDDL 120
           AQFYALLGALSYSPYG+ELELVKKAN+++YSER++R+KEI+PEEIS+ ++ AIEFP +D+
Sbjct: 64  AQFYALLGALSYSPYGIELELVKKANLIIYSERLKRKKEIKPEEISIDVSTAIEFPTEDV 123

Query: 121 KKIERVFGKLPEYTIHLAEFLDLIPGERLSEYYIYNGNVYLRKEDLIKVWMKAFERNIEK 180
           +KIERV+GK+PEYT+ +++FLDL+P E+L+ YYIY G VYL++EDLI++W KAFERN+E+
Sbjct: 124 RKIERVYGKIPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVER 183

Query: 181 SVNMLYEIRDELPGFFREVLGGIKEVAEQEFG-KSGEVKAGTLRPDLFPPCVKNALKGVP 239
            VNMLYEIRDELP F+R+VLG I+  AE+EFG K GE++ G LRP+ FPPC+KNALKGVP
Sbjct: 184 GVNMLYEIRDELPEFYRKVLGEIQAFAEEEFGRKFGEIQGGKLRPEFFPPCIKNALKGVP 243

Query: 240 QGLRNYAITVLLTSFLSYARICPNPPRRNVRVKDCIDDIRIITDEILPLIIEAANRCSPP 299
           QG+RNYAITVLLTSFLSYARICPNPPRRNVRVKDCI DIR+IT+EILP+IIEAANRCSPP
Sbjct: 244 QGIRNYAITVLLTSFLSYARICPNPPRRNVRVKDCIKDIRVITEEILPIIIEAANRCSPP 303

Query: 300 LFEDQPNEIKNIWYHLGFGYTANPKLEDSGNSTWYFPPNCDKIRANAPQLCTPDKHCKYV 359
           LFEDQPNEIKNIWYHLGFGYTANP LEDSGNSTWYFPPNC+KIRANAPQLCTPDKHCKY+
Sbjct: 304 LFEDQPNEIKNIWYHLGFGYTANPSLEDSGNSTWYFPPNCEKIRANAPQLCTPDKHCKYI 363

Query: 360 RNPLTYYLRRLYLEGRKNASKGGNERGEKRVLQQ 393
           RNPLTYYLRRLYLEGR+NA K GN+RG+K +L Q
Sbjct: 364 RNPLTYYLRRLYLEGRRNAPKRGNKRGKKELLHQ 397


>pir||F69177 hypothetical protein MTH586 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2621664|gb|AAB85092.1| (AE000840)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 434
           
 Score =  164 bits (410), Expect = 2e-39
 Identities = 125/423 (29%), Positives = 196/423 (45%), Gaps = 62/423 (14%)

Query: 2   LDPFSEKAKELLKEFGSINDFLNSIPRIVDVEEVIERVKIASDRKLLEGFVDIEDIKDLA 61
           ++PFSE A+E+++++GS++   ++   ++++        +A D  LL   +    +K L 
Sbjct: 7   INPFSEDAREIVRKYGSLDTIDDTRDELLEIGRRTRGQNLA-DNSLLPASIAELAVKRLE 65

Query: 62  QF------------YALLGALSYSPYGLE----LELVKKANILLYSERIRREKEIRPEEI 105
            +            YA L       Y +     L     A  +  S   R   E     +
Sbjct: 66  WYLRRQRKDFNHRDYAYLMNPEIEEYDVLAFYILAQAAGAGFMKASREARLVVESAGAMV 125

Query: 106 SLRINKAIEFPIDDLKKIERVFGKLPEYTIHLAEFLDLIPGERL--SEYYIYNGNVYLRK 163
             R+N    F  +  + +  V  +L    +   E  DL+   +L  ++  +  G V + +
Sbjct: 126 EDRLNV---FGGEREEIMAEVLYELGSEGLRWTELADLLGSGKLKLTDLILKEGRVIIDR 182

Query: 164 EDLIKVWMKAFERNIEKSVNMLYEI------------------RDELPGFFREVLGG--- 202
           ++ I  +  +     ++S + LY+I                   +E  G  RE+      
Sbjct: 183 DEFITSFQDSIR---DRSPDRLYDILVGLEVRETMISRMIMQRTEEYIGMVREMSSTVEV 239

Query: 203 ----------IKEVAEQEFGKSG----EVKAGTLRPDLFPPCVKNALKGVPQGLRNYAIT 248
                     I+E  E+    +G      + G L  + FPPC++  L GV  G RN AI 
Sbjct: 240 HPLILETAERIRETVEEIMSFTGGPVKSARPGKLVQEAFPPCIRGTLDGVRSGNRNDAIV 299

Query: 249 VLLTSFLSYARICPNP--PRRNVRVKDCIDDIRIITDEILPLIIEAANRCSPPLFEDQPN 306
           +LLTSF+SYAR+ P+    R  ++V D   D+RI   EILP+I +AA+RC PPLFED P 
Sbjct: 300 LLLTSFISYARLYPSVFRDRTPMKVSDLDPDLRITLGEILPVIYDAADRCEPPLFEDDPQ 359

Query: 307 EIKNIWYHLGFGYTANPKLEDSGNSTWYFPPNCDKIRANAPQLCTPDKHCKYVRNPLTYY 366
           E  NI   LGFG    P+LE+ G S WY P +C+KI+ + P LC PDK C  + NPLTYY
Sbjct: 360 EKLNITAKLGFGVHDMPELENEGESKWYTPMSCEKIKIHLPDLCRPDKLCSSISNPLTYY 419

Query: 367 LRR 369
            R+
Sbjct: 420 NRK 422


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.142    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155218047
Number of Sequences: 2977
Number of extensions: 6908127
Number of successful extensions: 15214
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15208
Number of HSP's gapped (non-prelim): 4
length of query: 393
length of database: 189,106,746
effective HSP length: 54
effective length of query: 339
effective length of database: 156,788,448
effective search space: 53151283872
effective search space used: 53151283872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)