BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2243 (PAB2243) DE:Hypothetical protein
(316 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75205 hypothetical protein PAB2243 - Pyrococcus abyssi (st... 623 e-178
pir||E71240 hypothetical protein PH0183 - Pyrococcus horikoshii ... 451 e-126
pir||H75187 hypothetical protein PAB0017 - Pyrococcus abyssi (st... 127 2e-28
pir||G71220 hypothetical protein PH0026 - Pyrococcus horikoshii ... 122 7e-27
>pir||C75205 hypothetical protein PAB2243 - Pyrococcus abyssi (strain Orsay)
>gi|5457599|emb|CAB49090.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 316
Score = 623 bits (1589), Expect = e-178
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MKAQEILELLKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTYY 60
MKAQEILELLKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTYY
Sbjct: 1 MKAQEILELLKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTYY 60
Query: 61 YAEFFGIDKLKEFEEFAKGKGKEGLFQLADLYSLLGYPERALQIYRDLLEGEEDNETIGE 120
YAEFFGIDKLKEFEEFAKGKGKEGLFQLADLYSLLGYPERALQIYRDLLEGEEDNETIGE
Sbjct: 61 YAEFFGIDKLKEFEEFAKGKGKEGLFQLADLYSLLGYPERALQIYRDLLEGEEDNETIGE 120
Query: 121 IYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYITFENGKIEEAKE 180
IYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYITFENGKIEEAKE
Sbjct: 121 IYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYITFENGKIEEAKE 180
Query: 181 TLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEGGRGEVFDVAFDGFI 240
TLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEGGRGEVFDVAFDGFI
Sbjct: 181 TLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEGGRGEVFDVAFDGFI 240
Query: 241 DLMWQLILEDKFDEIASNMPMFKAALPELGDFFEGIRRIALYRKGEIGREDVSEIIMKIK 300
DLMWQLILEDKFDEIASNMPMFKAALPELGDFFEGIRRIALYRKGEIGREDVSEIIMKIK
Sbjct: 241 DLMWQLILEDKFDEIASNMPMFKAALPELGDFFEGIRRIALYRKGEIGREDVSEIIMKIK 300
Query: 301 DERLVSILEFLGEAEL 316
DERLVSILEFLGEAEL
Sbjct: 301 DERLVSILEFLGEAEL 316
>pir||E71240 hypothetical protein PH0183 - Pyrococcus horikoshii
>gi|3256569|dbj|BAA29252.1| (AP000001) 318aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 318
Score = 451 bits (1149), Expect = e-126
Identities = 228/318 (71%), Positives = 269/318 (83%), Gaps = 2/318 (0%)
Query: 1 MKAQEILELLKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTYY 60
M+A+EI+ LLK GD+E+AK+ LSK ID L DEELKEILEVAE VA+EK D+ELLK+V YY
Sbjct: 1 MEAEEIIGLLKKGDLEKAKDALSKEIDNLSDEELKEILEVAESVAKEKEDIELLKLVVYY 60
Query: 61 YAEFFGIDKLKEFEEFAKGKGKEGLFQLADLYSLLGYPERALQIYRDLLEGE--EDNETI 118
YAEFFGIDKL+EFE AK KG EGL LADLYSLLGYPE+AL IYR+LL+ + ++ E I
Sbjct: 61 YAEFFGIDKLEEFEGIAKEKGYEGLMHLADLYSLLGYPEKALDIYRELLKTDLIKEKEHI 120
Query: 119 GEIYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYITFENGKIEEA 178
GEIYYGIATIHDELQEY+KAL+AI +AV AFK+ EKL QAE+Y AYITFENG ++A
Sbjct: 121 GEIYYGIATIHDELQEYDKALEAINEAVKAFKESNNVEKLHQAEVYRAYITFENGDRDKA 180
Query: 179 KETLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEGGRGEVFDVAFDG 238
KE L LL + EIKAQ+HLVFKEIFEDEENYEAAI E+LYSL+EG EVFD+AFDG
Sbjct: 181 KEILAGLLPHVTNREIKAQIHLVFKEIFEDEENYEAAIQESLYSLIEGIDTEVFDLAFDG 240
Query: 239 FIDLMWQLILEDKFDEIASNMPMFKAALPELGDFFEGIRRIALYRKGEIGREDVSEIIMK 298
IDL+W+LILEDKF+EI +MPMFK A+P L DFFEG+RRIA+YR+G+IGRE+VSEI+MK
Sbjct: 241 LIDLIWELILEDKFEEIYKSMPMFKVAIPSLKDFFEGVRRIAMYREGKIGREEVSEILMK 300
Query: 299 IKDERLVSILEFLGEAEL 316
+KDERLVSILEFLGEAE+
Sbjct: 301 VKDERLVSILEFLGEAEV 318
>pir||H75187 hypothetical protein PAB0017 - Pyrococcus abyssi (strain Orsay)
>gi|5457460|emb|CAB48951.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 339
Score = 127 bits (316), Expect = 2e-28
Identities = 101/325 (31%), Positives = 161/325 (49%), Gaps = 17/325 (5%)
Query: 1 MKAQEILEL-LKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTY 59
M E EL LK D E+ E+ + +++E+++++E L+ +VA E + +LL V +
Sbjct: 1 MSLMEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAH 60
Query: 60 YYAEFF----GIDKLKEFEEFAKGKGKE----GLFQLADLYSLLGYPERALQIYRDLLEG 111
Y GI+ K E K K E L+ LAD Y G PE AL++Y +LLE
Sbjct: 61 LYEHLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLEL 120
Query: 112 EE---DNETIGEIYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYI 168
E + + I IA + DEL E E+A+ +E+A F+K + + LA+
Sbjct: 121 ERKLNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHF 180
Query: 169 TFENGKIEEAKETLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEG-G 227
+E GK + A E + ++L D EI+ LV E++ + Y+ A +L
Sbjct: 181 NYELGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAED 240
Query: 228 RGEVFDVAFDGFIDLMWQLILEDKFDEIASNMPMFKAAL--PELGDFFEGIRRIALYRKG 285
E+F +AFD I+ + L E K+ E+ S +P A L + FFE I ++A +R G
Sbjct: 241 DEELFGLAFDSIIEFLEDLFNEGKYSEL-SEIPKLFAELFEDDTRHFFEAIAKLAEWRLG 299
Query: 286 -EIGREDVSEIIMKIKDERLVSILE 309
E R+D E+ KI++E L I++
Sbjct: 300 NENARKDFEELYNKIENEELRQIID 324
>pir||G71220 hypothetical protein PH0026 - Pyrococcus horikoshii
>gi|3256411|dbj|BAA29094.1| (AP000001) 338aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 338
Score = 122 bits (302), Expect = 7e-27
Identities = 96/316 (30%), Positives = 155/316 (48%), Gaps = 18/316 (5%)
Query: 10 LKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTYYYAEFF---- 65
LK D ++ E+ DE+ +++L+E L+ +VA E D +L+ + + Y
Sbjct: 12 LKNKDCKKLLELFDDYFDEVSEDKLEEELKRVGEVAVECEDFDLIHEIAHIYEHLGEAEK 71
Query: 66 GIDKLKEFEEFAKGKGKE----GLFQLADLYSLLGYPERALQIYRDLLEGEE---DNETI 118
GID K E KG+ E L+ LAD Y G PE AL+ Y +LLE E+ + I
Sbjct: 72 GIDLYKRIVEKRKGRNTEDYAEALYYLADAYDHFGMPEEALKTYEELLELEKRIGNKREI 131
Query: 119 GEIYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYITFENGKIEEA 178
G +A I DEL E+A+ +E+A F++ + + LA+ +E G+ EEA
Sbjct: 132 GLTLANLAIIKDELGNVEEAIKLMEEARKIFEELKDENNYLISLIDLAHFKYELGEYEEA 191
Query: 179 KETLGKLLAETEDSEIKAQVHLVFKEIFEDEENY-EAAIHEALYSLLEGGRG--EVFDVA 235
+ + ++L D EI+ LV EI+ E Y EAAI +L + L+ E+F +
Sbjct: 192 MKLIREVLRNPVDKEIEVNARLVESEIYAGERKYKEAAI--SLRNALQRSEDDEELFSLV 249
Query: 236 FDGFIDLMWQLILEDKFDEIASNMPMFKAAL-PELGDFFEGIRRIALYRKG-EIGREDVS 293
FD + + L E ++ E+ P+F + FF I+ +A +R G E RE+
Sbjct: 250 FDSLTEFLEGLFNESRYRELVEVSPLFAELFEDDTKYFFNAIKGLAEWRLGNEKAREEFE 309
Query: 294 EIIMKIKDERLVSILE 309
E I++E L ++L+
Sbjct: 310 ENYKNIQNEELKALLD 325
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.139 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110721579
Number of Sequences: 2977
Number of extensions: 4825540
Number of successful extensions: 21055
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21035
Number of HSP's gapped (non-prelim): 4
length of query: 316
length of database: 189,106,746
effective HSP length: 59
effective length of query: 257
effective length of database: 153,796,013
effective search space: 39525575341
effective search space used: 39525575341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)