BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2245 (PAB2245) DE:GLUTAREDOXIN-LIKE PROTEIN
(226 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75204 glutaredoxin-like protein PAB2245 - Pyrococcus abyss... 457 e-128
pir||H71239 probable glutaredoxin-like protein - Pyrococcus hori... 443 e-124
pir||S54843 glutaredoxin-like protein - Pyrococcus furiosus >gi|... 419 e-116
pir||G72322 glutaredoxin-related protein - Thermotoga maritima (... 184 6e-46
emb|CAC11272.1| (AL445063) alkyl hydroperoxide reductase subunit... 177 1e-43
gb|AAK40538.1| Glutaredoxin related protein [Sulfolobus solfatar... 119 2e-26
pir||A72669 probable glutaredoxin-like protein APE0775 - Aeropyr... 119 2e-26
pir||E70340 glutaredoxin-like protein - Aquifex aeolicus >gi|298... 117 9e-26
>pir||F75204 glutaredoxin-like protein PAB2245 - Pyrococcus abyssi (strain
Orsay) >gi|5457594|emb|CAB49085.1| (AJ248283)
GLUTAREDOXIN-LIKE PROTEIN [Pyrococcus abyssi]
Length = 226
Score = 457 bits (1162), Expect = e-128
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV 60
MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV
Sbjct: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV 60
Query: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAETD 120
DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAETD
Sbjct: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAETD 120
Query: 121 LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE
Sbjct: 121 LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
Query: 181 YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAALS 226
YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAALS
Sbjct: 181 YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAALS 226
>pir||H71239 probable glutaredoxin-like protein - Pyrococcus horikoshii
>gi|3256564|dbj|BAA29247.1| (AP000001) 226aa long
hypothetical glutaredoxin-like protein [Pyrococcus
horikoshii]
Length = 226
Score = 443 bits (1127), Expect = e-124
Identities = 216/226 (95%), Positives = 224/226 (98%)
Query: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV 60
MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV
Sbjct: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV 60
Query: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAETD 120
DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVS+ +TD
Sbjct: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSKGDTD 120
Query: 121 LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
LM +SKEEV+KIDK+VRIL+FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE
Sbjct: 121 LMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
Query: 181 YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAALS 226
YPEWADQYNVMAVPKIVIQV+GEDKVQFEGAYPEKMFLEKLL+ALS
Sbjct: 181 YPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSALS 226
>pir||S54843 glutaredoxin-like protein - Pyrococcus furiosus
>gi|4699595|pdb|1A8L| Protein Disulfide Oxidoreductase
From Archaeon Pyrococcus Furiosus
>gi|840852|emb|CAA86213.1| (Z38068) glutaredoxin-like
protein [Pyrococcus furiosus]
>gi|3080565|dbj|BAA25809.1| (AB013084) glutaredoxin-like
protein [Pyrococcus furiosus]
Length = 226
Score = 419 bits (1066), Expect = e-116
Identities = 201/226 (88%), Positives = 219/226 (95%)
Query: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIV 60
MGLIS+ DK++IKEEFFSKMVNPVKLIVF+ K+HCQYCDQLKQLVQELSELTDKLSYEIV
Sbjct: 1 MGLISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIV 60
Query: 61 DFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAETD 120
DFDTPEGKELA++YRIDRAPATTITQDGKDFGVRYFG+PAGHEFAAFLEDIVDVSR ET+
Sbjct: 61 DFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETN 120
Query: 121 LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
LM E+K+ + ID++VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE
Sbjct: 121 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
Query: 181 YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAALS 226
YPEWADQYNVMAVPKIVIQV+GED+V+FEGAYPEKMFLEKLL+ALS
Sbjct: 181 YPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 226
>pir||G72322 glutaredoxin-related protein - Thermotoga maritima (strain MSB8)
>gi|4981403|gb|AAD35950.1|AE001753_6 (AE001753)
glutaredoxin-related protein [Thermotoga maritima]
Length = 221
Score = 184 bits (463), Expect = 6e-46
Identities = 94/225 (41%), Positives = 146/225 (64%), Gaps = 12/225 (5%)
Query: 1 MGLISEEDKRIIKEEFFSKMVNPVKLIVFI--GKEHCQYCDQLKQLVQELSELTDKLSYE 58
MG++S++D +K+ F ++ VK++ F K CQYC+ +Q+++EL + KL E
Sbjct: 1 MGILSDKDIAYLKDLFGKELKRKVKIVFFKTEDKTRCQYCEITEQVLEELVSVDPKLELE 60
Query: 59 IVDFDTPEGKELAEKYRIDRAPATTIT-QDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRA 117
I DFD+ KE EKY+++ PAT + +DGKD+G+R++G+P+GHEF ++DI+ VS
Sbjct: 61 IHDFDSD--KEAVEKYQVEMVPATILLPEDGKDYGIRFYGVPSGHEFGTLIQDIITVSEG 118
Query: 118 ETDLMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVE 177
+ L ES +++ +++ +RI VFVTPTCPYCP AV MAH A+ KI+G+M+E
Sbjct: 119 KPQLSEESIQKLQSLEEPIRISVFVTPTCPYCPRAVLMAHNMAM-----ASDKIIGEMIE 173
Query: 178 AIEYPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLL 222
A EY E ++++ V +VP IV+ D F GAYPEK F+ ++L
Sbjct: 174 ANEYWELSEKFGVSSVPHIVVNRD--PSKFFVGAYPEKEFINEVL 216
>emb|CAC11272.1| (AL445063) alkyl hydroperoxide reductase subunit f related protein
[Thermoplasma acidophilum]
Length = 220
Score = 177 bits (444), Expect = 1e-43
Identities = 93/224 (41%), Positives = 144/224 (63%), Gaps = 13/224 (5%)
Query: 3 LISEEDKRIIKEEFFSKMVNPVKLIVFIGK-EHCQYCDQLKQLVQELSELTDKLSYEIVD 61
LI +ED+ +K EF + N V L+VF E+C+YC + QL E+SE+ K+ ++ +
Sbjct: 4 LIRKEDREYLKGEFEKYLKNDVDLVVFTSNDENCRYCKETVQLATEVSEINPKIHLKVYN 63
Query: 62 FDTPEGKELAEKYRIDRAPATTITQDGKDFG-VRYFGIPAGHEFAAFLEDIVDVSRAETD 120
FD E KE+ +KY +++ PAT +++ G + G + Y+G+P+G+EF + +ED+ +VS E D
Sbjct: 64 FD--EDKEMVKKYGVEKYPATIVSKAGVEDGRIVYYGLPSGYEFGSLIEDLKNVSMGEAD 121
Query: 121 LMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180
+ +++ E ++KIDK + I V+VTPTCPYCP AV AHKFA+ N I G+M+EA+E
Sbjct: 122 VSSKAAELISKIDKPITIKVYVTPTCPYCPRAVGTAHKFALLNP-----NIKGEMIEALE 176
Query: 181 YPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAA 224
+ A++ V +VP IVI D V F GAYP+ F E ++ A
Sbjct: 177 FENEAEEVGVSSVPHIVINND----VTFIGAYPDDQFAEYVMEA 216
>gb|AAK40538.1| Glutaredoxin related protein [Sulfolobus solfataricus]
Length = 233
Score = 119 bits (296), Expect = 2e-26
Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 18/229 (7%)
Query: 3 LISEEDKRIIKEEFFSKMVNPVKLIVFIGK--EHCQYCDQLKQLVQELSELTDK------ 54
L S+E K +++ M NPV + VF+ +CQYC + ++ ++ K
Sbjct: 8 LFSDEVKNALQDAL-KDMKNPVDVYVFVDNTDSNCQYCGVTTKFLEFMASAAPKDSNGSL 66
Query: 55 LSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDV 114
L IVD +++ E++ ++R P T +G +R+ G P G E A +E IV +
Sbjct: 67 LKVHIVDRANENSRKIFEEFNVERVP-TVAFYNGY---IRWTGAPLGEEIRALVETIVRL 122
Query: 115 SRAETDLMAESKEEV-AKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILG 173
S+ E+ L E+ E + +K++ V+I VTP+CPYCP A MAH A E +AGK ++
Sbjct: 123 SQGESGLSQETVEAIKSKLNGKVKIETVVTPSCPYCPYAALMAHMVAFEACRAGKCNVIS 182
Query: 174 DMVEAIEYPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLL 222
+++EA E + A++Y VM+VP I I + ++F G E+ F+ +L
Sbjct: 183 EVIEAYENQDIAEKYQVMSVPAIAI----NESIEFIGVPYEENFINAIL 227
>pir||A72669 probable glutaredoxin-like protein APE0775 - Aeropyrum pernix
(strain K1) >gi|5104438|dbj|BAA79753.1| (AP000060) 243aa
long hypothetical glutaredoxin-like protein [Aeropyrum
pernix]
Length = 243
Score = 119 bits (296), Expect = 2e-26
Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 15/226 (6%)
Query: 4 ISEEDKRIIKEEFFSKMVNPVKLIVFIGKEHCQYCDQLKQLVQELSELTD-----KLSYE 58
+SE+ +R ++E ++MVNPV++ VF+ K C+ C+ +L++ E + KL
Sbjct: 9 LSEDFRRELRETL-AEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKL 67
Query: 59 IVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAE 118
V + + + +E ++++R P T+ G + VR+ GIPAG E A +E I+ +S E
Sbjct: 68 NVYYRESDSDKFSE-FKVERVP--TVAFLGGE--VRWTGIPAGEEIRALVEVIMRLSEDE 122
Query: 119 TDLMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178
+ L +KE + + V I +TP+CPYCP AV +AH FA E K G IL + VEA
Sbjct: 123 SGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEA 182
Query: 179 IEYPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLAA 224
E P+ AD+Y VM+VP I I + F G E+ FL+ + +A
Sbjct: 183 YENPDIADKYGVMSVPSIAI----NGYLVFVGVPYEEDFLDYVKSA 224
>pir||E70340 glutaredoxin-like protein - Aquifex aeolicus
>gi|2983104|gb|AAC06709.1| (AE000690) glutaredoxin-like
protein [Aquifex aeolicus]
Length = 229
Score = 117 bits (291), Expect = 9e-26
Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 13/225 (5%)
Query: 3 LISEEDKRIIKEEFFSKMVNPVKLIVF---IGKEHCQYCDQL-KQLVQELSELTDKLSYE 58
L++ + + +KE + PV + +F IG E CQ ++L K+ V+ + E + +
Sbjct: 2 LLNLDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIK 61
Query: 59 IVDFDTPEGKELAEKYRIDRAPATTITQDGKDFGVRYFGIPAGHEFAAFLEDIVDVSRAE 118
+ + KE EKY +DR P I D KD+G+RY G+PAG EF + I VS+ +
Sbjct: 62 LDIYSPFTHKEETEKYGVDRVPTIVIEGD-KDYGIRYIGLPAGLEFTTLINGIFHVSQRK 120
Query: 119 TDLMAESKEEVAKIDKNVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178
L ++ E + +D + I VFVT +C YCP A MA FA+ N I +++A
Sbjct: 121 PQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-----DYITSKVIDA 175
Query: 179 IEYPEWADQYNVMAVPKIVIQVDGEDKVQFEGAYPEKMFLEKLLA 223
E + A+Q+ V+ VPKIVI + +F GA PE FL ++A
Sbjct: 176 SENQDLAEQFQVVGVPKIVI---NKGVAEFVGAQPENAFLGYIMA 217
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80412917
Number of Sequences: 2977
Number of extensions: 3235604
Number of successful extensions: 9647
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9622
Number of HSP's gapped (non-prelim): 8
length of query: 226
length of database: 189,106,746
effective HSP length: 55
effective length of query: 171
effective length of database: 156,189,961
effective search space: 26708483331
effective search space used: 26708483331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)