BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2246 (PAB2246) DE:Site specific DNA-methyltransferase
(464 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75204 site specific DNA-methyltransferase PAB2246 - Pyroco... 927 0.0
pir||JC4925 XmnI methyltransferase (EC 2.1.1.-) - Xanthomonas ma... 82 1e-14
pir||S49395 HsdM1 protein - Mycoplasma pulmonis >gi|496158|gb|AA... 80 4e-14
gb|AAC25972.1| (AF003541) N6 adenine methylation (M) subunit hom... 78 3e-13
gi|10956197 type IC modification subunit [Streptococcus thermoph... 73 9e-12
pir||E82933 type I restriction enzyme M protein, truncated homol... 73 9e-12
pir||T09460 type I site-specific deoxyribonuclease (EC 3.1.21.3)... 72 1e-11
gb|AAF69138.1|AF228680_2 (AF228680) HsdM [Lactococcus lactis] >g... 72 1e-11
pir||E71886 type I restriction enzyme (modification chain) - Hel... 72 2e-11
pir||T30323 type I site-specific deoxyribonuclease (EC 3.1.21.3)... 71 3e-11
pir||JH0634 site-specific DNA-methyltransferase (adenine-specifi... 70 5e-11
gb|AAA27491.1| (M76682) methylase [Thermus thermophilus] 70 5e-11
pir||H70977 hypothetical protein Rv3263 - Mycobacterium tubercul... 70 6e-11
>pir||D75204 site specific DNA-methyltransferase PAB2246 - Pyrococcus abyssi
(strain Orsay) >gi|5457592|emb|CAB49083.1| (AJ248283)
Site specific DNA-methyltransferase [Pyrococcus abyssi]
Length = 464
Score = 927 bits (2370), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MTSQKEKHFKRKEKVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLK 60
MTSQKEKHFKRKEKVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLK
Sbjct: 1 MTSQKEKHFKRKEKVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLK 60
Query: 61 EKGFKIYGFDIDPTVKDRAPKEIKDSIIITDGLLDLPHEGEYDVVVGNPPFSAKYGRITD 120
EKGFKIYGFDIDPTVKDRAPKEIKDSIIITDGLLDLPHEGEYDVVVGNPPFSAKYGRITD
Sbjct: 61 EKGFKIYGFDIDPTVKDRAPKEIKDSIIITDGLLDLPHEGEYDVVVGNPPFSAKYGRITD 120
Query: 121 KKILSKFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDFILRN 180
KKILSKFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDFILRN
Sbjct: 121 KKILSKFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDFILRN 180
Query: 181 SQILAIVALPRNVFTGTTARTAILFAKKGGPHKGEVLMANVPSIHHLTISKVKVMGKSVK 240
SQILAIVALPRNVFTGTTARTAILFAKKGGPHKGEVLMANVPSIHHLTISKVKVMGKSVK
Sbjct: 181 SQILAIVALPRNVFTGTTARTAILFAKKGGPHKGEVLMANVPSIHHLTISKVKVMGKSVK 240
Query: 241 LVDSILYPEFYLQDHLKLENSVQLGELVETRSGQTEYGEKRKFSKSGIPFISAKVVTPLG 300
LVDSILYPEFYLQDHLKLENSVQLGELVETRSGQTEYGEKRKFSKSGIPFISAKVVTPLG
Sbjct: 241 LVDSILYPEFYLQDHLKLENSVQLGELVETRSGQTEYGEKRKFSKSGIPFISAKVVTPLG 300
Query: 301 IDFTKDKKFIQPNSEMDKKSAHAHVGEIVFVRVGVGTIGRTAVITSKEEEGIVDDWSYIL 360
IDFTKDKKFIQPNSEMDKKSAHAHVGEIVFVRVGVGTIGRTAVITSKEEEGIVDDWSYIL
Sbjct: 301 IDFTKDKKFIQPNSEMDKKSAHAHVGEIVFVRVGVGTIGRTAVITSKEEEGIVDDWSYIL 360
Query: 361 TVKSDKVNPYYLAFYLQAPTIKKQILRYARGVGTITIPQRELKKIPVLIPPKDFLKKCEE 420
TVKSDKVNPYYLAFYLQAPTIKKQILRYARGVGTITIPQRELKKIPVLIPPKDFLKKCEE
Sbjct: 361 TVKSDKVNPYYLAFYLQAPTIKKQILRYARGVGTITIPQRELKKIPVLIPPKDFLKKCEE 420
Query: 421 AYKEMVKLRKEGKIREAKMILNSIEKEIEEMIKSKISNLGFQKD 464
AYKEMVKLRKEGKIREAKMILNSIEKEIEEMIKSKISNLGFQKD
Sbjct: 421 AYKEMVKLRKEGKIREAKMILNSIEKEIEEMIKSKISNLGFQKD 464
>pir||JC4925 XmnI methyltransferase (EC 2.1.1.-) - Xanthomonas manihotis 7AS1
>gi|1209820|gb|AAC44403.1| (U44748) XmnI
methyltransferase [Xanthomonas campestris pv. manihotis]
Length = 620
Score = 81.9 bits (199), Expect = 1e-14
Identities = 118/512 (23%), Positives = 212/512 (41%), Gaps = 81/512 (15%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLAC-DPACGNGVFL-----KYLKEKGFKI- 66
K LG F TP +V + +V F + ++ C DPACG+G FL K+ KE KI
Sbjct: 118 KGLGIFLTPDEVVREVVSFV-----DPPSSAKCLDPACGSGTFLIEVIKKWRKENAQKIS 172
Query: 67 -YGFDIDPTVK-------DRAP-----KEIKDSIIITDGLLDLP--HEGEYDVVVGNPPF 111
+G D +P + P + + DS++ P G +D ++ NPPF
Sbjct: 173 VWGADKNPRMLLIGELNLGHFPGLTFNRALMDSLVEPGKRHSKPWCRYGYFDFILTNPPF 232
Query: 112 SAKY---GRITDKKILSKFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNT 168
G ++ G R Q+ E LF+E+ R + GG + V+LP + +N
Sbjct: 233 GVTVEASGAAYSGYDIAFTANGEPRARQSSEWLFVEQSLRWLKPGGTLAVVLPRSVLTNP 292
Query: 169 NLKYVRDFILRNSQILAIVALPRNVF--TGTTARTAILFAKKGGPHKGE-----VLMANV 221
+ Y R + + + A++ LP F TG T + F +K K V+ A +
Sbjct: 293 SSAYERSLLAKLGYLKAVIQLPPETFLVTGAQTNTVVAFIEKYASDKDREKKVGVVQATL 352
Query: 222 PSIHHLTISKVKVMGKSVKLVDSILYPEFYLQDHLKL----------------------- 258
++ + + + + + L + P+ D++ +
Sbjct: 353 SNVGYDSTGRPRQGSQLDGLAKHMRDPKGSPCDYVSVLAPQKADRTFEALSAKSASKRRS 412
Query: 259 ENSVQLGELV-ETRSGQTEYGEKRKFSKSGIPF-ISAKVVTPLGIDF-TKDKKFIQPNSE 315
V LG+L E R+G+T + +S++G F I +T GI++ +D+ FI ++
Sbjct: 413 NLGVPLGDLASEIRTGRTP--PRAAYSENGGLFLIKVGNLTGSGINWIARDRNFIDTSTM 470
Query: 316 MDKKSAHAHV---GEIVFVRVGVGT--IGRTAVITSKEEEGIVDDWSYILTV-----KSD 365
+K + G+IV I + I +K E + S++ V K +
Sbjct: 471 TSRKLGGIQLVKNGDIVLTSSAHSPVYIAKKVDIITKVPEWVGGRASFVGEVMLVRPKQE 530
Query: 366 KVNPYYLAFYLQAPTIKKQILRYARGVGTITIPQRELKKIPV---LIPPKDFLKKCEEAY 422
++ P L YL+ PT+ QI RG T + +L + V ++ D ++ +E
Sbjct: 531 RIAPMLLLAYLRQPTVASQIQEMVRG-QTAHLHADDLAALMVPTSVLDASDDWREVQELL 589
Query: 423 KEMVKLRKEGKIREAKMILNSIEKEIEEMIKS 454
E V L ++ E + SI ++ + +++
Sbjct: 590 VEEVAL--NDRLNEIARLQQSIANKLSDGLRA 619
>pir||S49395 HsdM1 protein - Mycoplasma pulmonis >gi|496158|gb|AAA65633.1|
(L25415) restriction-modification enzyme subunit M1
[Mycoplasma pulmonis]
Length = 520
Score = 80.4 bits (195), Expect = 4e-14
Identities = 68/220 (30%), Positives = 106/220 (47%), Gaps = 27/220 (12%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLKEKGFK---IYGFD 70
K G+F+TP KV++ +V+ ++H +N++ N A DPACG+G L L K K IYG +
Sbjct: 193 KKAGEFYTPSKVSELLVKI-VSHGKNKI-NKAYDPACGSGSLLIKLANKVGKYNKIYGQE 250
Query: 71 IDPTVKDRAPKEI--------KDSIIITDGLLDLPH---EGEYDVVVGNPPFSAKYGRIT 119
+ + A K + D L++ H EG +D +V NPPFS K+
Sbjct: 251 VKTATYNLARMNFILRGVPFSKLDLRSGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQ 310
Query: 120 DKKILSKFELGRERKSQA----IEILFLEKF-FRCAREGGIIGVILPFGIFSNTNLKY-- 172
+ LSK S A + FL+ F ++ GII + GI S + K
Sbjct: 311 E---LSKDRRYNSYPSLAPKSYADFAFLQHMLFHVNKDNGIIASVFSLGILSRKSPKAEE 367
Query: 173 -VRDFILRNSQILAIVALPRNVFTGTTARTAILFAKKGGP 211
+R +I+ + I I+ LP N+F T+ + I+ A+K P
Sbjct: 368 DIRKYIIDKNYIDTIIFLPPNLFYNTSIESCIIVARKNKP 407
>gb|AAC25972.1| (AF003541) N6 adenine methylation (M) subunit homolog [Mycoplasma
pulmonis]
Length = 520
Score = 77.6 bits (188), Expect = 3e-13
Identities = 67/225 (29%), Positives = 102/225 (44%), Gaps = 37/225 (16%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLKEKGFK---IYGFD 70
K G+F+TP KVA+ +V+ ++H +N++ N A DPACG+G L L K K IYG +
Sbjct: 193 KKAGEFYTPSKVAELLVKI-VSHGKNKI-NKAYDPACGSGSLLIKLANKVGKYNKIYGQE 250
Query: 71 IDPTVKDRAPKEI--------KDSIIITDGLLDLPH---EGEYDVVVGNPPFSAKYGRIT 119
+ + A K + D L++ H E +D +V NPPFS K+
Sbjct: 251 VKTATYNLARMNFILRGVPFSKLDLRSGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQ 310
Query: 120 DKKILSKFELGRER----------KSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTN 169
EL ++R KS A F ++ GII + GI S +
Sbjct: 311 --------ELSKDRRYNPYPSLAPKSYADFAFLQHMLFHVNKDNGIIASVFSLGILSRIS 362
Query: 170 LKY---VRDFILRNSQILAIVALPRNVFTGTTARTAILFAKKGGP 211
K +R +I+ + I I+ LP N+F T + I+ A+K P
Sbjct: 363 PKAEEDIRKYIIDKNYIDTIIFLPPNLFYNTGIESCIIVARKNKP 407
>gi|10956197 type IC modification subunit [Streptococcus thermophilus]
>gi|11279435|pir||T44803 type I site-specific
deoxyribonuclease (EC 3.1.21.3) chain hsdM [imported] -
Streptococcus thermophilus plasmid pER35
>gi|6137148|gb|AAF04357.1| (AF177167) type IC
modification subunit [Streptococcus thermophilus]
Length = 531
Score = 72.6 bits (175), Expect = 9e-12
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLKE-----KGFKIYG 68
K G+F+TP V++ + E E+RV DPA G+G + ++ +G
Sbjct: 189 KKAGEFYTPQAVSRIMSEITSIGQESRVPFHIYDPAMGSGSLMLNIRRYLIHPNQVHYHG 248
Query: 69 FDIDPTVKDRAPKEI------KDSIIITDGLL---DLPHEGEY--DVVVGNPPFSAKYGR 117
+++ T + A + K+ + + +G D P E Y D VV NPP+SAK+
Sbjct: 249 QELNTTTFNLARMNLILHGVDKERMNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSA 308
Query: 118 ITDKKILSKFE-LGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLK-YVRD 175
+FE G+ + FL F +E G +G++LP G+ + +R
Sbjct: 309 ADKFLSDPRFERFGKLAPKSKADFAFLLHGFYHLKESGTMGIVLPHGVLFRGGAEGTIRQ 368
Query: 176 FILRNSQILAIVALPRNVFTGTTARTAILFAKK 208
+L I A++ LP N+F GT+ T ++ KK
Sbjct: 369 ALLEMGAIDAVIGLPANIFFGTSIPTTVIILKK 401
>pir||E82933 type I restriction enzyme M protein, truncated homolog UU098
[imported] - Ureaplasma urealyticum
>gi|6899053|gb|AAF30504.1|AE002110_2 (AE002110) type I
restriction enzyme M protein (fragment) [Ureaplasma
urealyticum]
Length = 348
Score = 72.6 bits (175), Expect = 9e-12
Identities = 55/214 (25%), Positives = 103/214 (47%), Gaps = 22/214 (10%)
Query: 17 GQFFTPPKVAKFIVEFAIAHLEN------RVTNLACDPACGNG-VFLKYLK-EKGFKIYG 68
G+FFTP +V++ +VE + N R DP CG+G + LKY K +G K YG
Sbjct: 22 GEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPCCGSGSLLLKYAKLNEGVKFYG 81
Query: 69 FDIDPTVKDRAPKEI--------KDSIIITDGLLDLPHEGE--YDVVVGNPPFSAKYGRI 118
+I+ T + A + K I + D LLD H + +D +V NPP+S K+
Sbjct: 82 QEINLTTYNLARINMFLHNIGYDKFDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGK 141
Query: 119 TDKKILS--KFELGRERKSQAIEILFLEKFFRCAREGGIIGVIL-PFGIFSNTNLKYVRD 175
++ + + +F + + + F+ G +++ P ++ + + +R
Sbjct: 142 SNPLLANDERFHVTQLAPKGKADFAFVLHILHNLSSSGTAAIVMFPGTLYRDHAEQDIRK 201
Query: 176 FILRNSQIL-AIVALPRNVFTGTTARTAILFAKK 208
+++ N ++ +++ LP N+F GT+ T I+ +K
Sbjct: 202 YLVDNVNVVDSVIQLPDNLFFGTSISTCIIVLRK 235
>pir||T09460 type I site-specific deoxyribonuclease (EC 3.1.21.3) LldI chain
hsdM - Lactococcus lactis subsp. lactis plasmid pND861
>gi|2689699|gb|AAB91416.1| (AF034786) modification
subunit [Lactococcus lactis bv. diacetylactis]
Length = 531
Score = 72.2 bits (174), Expect = 1e-11
Identities = 61/213 (28%), Positives = 97/213 (44%), Gaps = 18/213 (8%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFL----KYLKEKGFKIY-G 68
K G+F+TP V++ + E E+R DPA G+G + +YL Y G
Sbjct: 189 KKAGEFYTPQAVSRIMSEITSIGQESRAPFHIYDPAMGSGSLMLNIRRYLLNPNQVHYHG 248
Query: 69 FDIDPTVKDRAPKEI------KDSIIITDGLL---DLPHEGEY--DVVVGNPPFSAKYGR 117
+++ T + A + K+ + + +G D P E Y D VV NPP+SAK+
Sbjct: 249 QELNTTTFNLARMNLILHGVDKERMNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSA 308
Query: 118 ITDKKILSKFE-LGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGI-FSNTNLKYVRD 175
+FE G+ + FL F +E G +G++LP G+ F +R
Sbjct: 309 ADKFLSDPRFERFGKLAPKSKADFAFLLHGFYHLKESGTMGIVLPHGVLFRGAAEGTIRQ 368
Query: 176 FILRNSQILAIVALPRNVFTGTTARTAILFAKK 208
+L I A++ LP N+F GT+ T ++ KK
Sbjct: 369 ALLEMGAIDAVIGLPANIFFGTSIPTTVIILKK 401
>gb|AAF69138.1|AF228680_2 (AF228680) HsdM [Lactococcus lactis]
>gi|9789463|gb|AAF98315.1|AF243383_16 (AF243383) HsdM
[Lactococcus lactis subsp. lactis]
Length = 537
Score = 72.2 bits (174), Expect = 1e-11
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFL----KYL-KEKGFKIYG 68
K G+F+TP V++ + E E+R DPA G+G + +YL +G
Sbjct: 195 KKAGEFYTPQAVSRIMSEITSIGQESRAPFHIYDPAMGSGSLMLNIRRYLINPNQVHYHG 254
Query: 69 FDIDPTVKDRAPKEI------KDSIIITDGLL---DLPHEGEY--DVVVGNPPFSAKYGR 117
+++ T + A + K+ + + +G D P E Y D VV NPP+SAK+
Sbjct: 255 QELNTTTFNLARMNLILHGVDKERMNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSA 314
Query: 118 ITDKKILSKFE-LGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGI-FSNTNLKYVRD 175
+FE G+ + FL F +E G +G++LP G+ F +R
Sbjct: 315 ADKFLSDPRFERFGKLAPKSKADFAFLLHGFYHLKESGTMGIVLPHGVLFRGAAEGTIRQ 374
Query: 176 FILRNSQILAIVALPRNVFTGTTARTAILFAKK 208
+L I A++ LP N+F GT+ T ++ KK
Sbjct: 375 ALLEMGAIDAVIGLPANIFFGTSIPTTVIILKK 407
>pir||E71886 type I restriction enzyme (modification chain) - Helicobacter
pylori (strain J99) >gi|4155366|gb|AAD06378.1|
(AE001509) TYPE I RESTRICTION ENZYME (MODIFICATION
SUBUNIT) [Helicobacter pylori J99]
Length = 528
Score = 71.8 bits (173), Expect = 2e-11
Identities = 57/212 (26%), Positives = 105/212 (48%), Gaps = 22/212 (10%)
Query: 17 GQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNG-VFLKYLKEKGFK-----IYGFD 70
G++FTP +V++ + + + + EN N DP CG+G + L++ K G K +G +
Sbjct: 210 GEYFTPQEVSELLAKITLHNQEN--INKVYDPCCGSGSLLLQFSKVLGDKNVLKGYFGQE 267
Query: 71 IDPTVKDRAPKEI--------KDSIIITDGLLDLPHEGE--YDVVVGNPPFSAKYGRITD 120
I+ T + + K I + D LLD HE + +D +V NPP+S K+ +
Sbjct: 268 INLTTYNLCRINMFLHDINYSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWIGDNN 327
Query: 121 KKILS--KF-ELGRERKSQAIEILF-LEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDF 176
+++ +F + G A ++ F + + +G V P ++ + K +R++
Sbjct: 328 PLLMNDERFNKAGALAPKNAADLAFTMHMLSYLSNQGAAAIVEFPGVLYRSGAEKKIREY 387
Query: 177 ILRNSQILAIVALPRNVFTGTTARTAILFAKK 208
+++ + I ++ALP N+F GT T IL KK
Sbjct: 388 LVKENFIDCVIALPENLFFGTNIATCILVLKK 419
>pir||T30323 type I site-specific deoxyribonuclease (EC 3.1.21.3) LldI chain M
[validated] - Lactococcus lactis plasmid pIL2614
>gi|2865243|gb|AAC15897.1| (U90222) type IC modification
subunit [Lactococcus lactis]
Length = 531
Score = 70.6 bits (170), Expect = 3e-11
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 18/213 (8%)
Query: 14 KVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFL----KYLKEKGFKIY-G 68
K G+F+TP V+K + E E R DPA G+G + +YL Y G
Sbjct: 189 KKAGEFYTPQAVSKIMSEITSIGQETRAPFHIYDPAMGSGSLMLNIRRYLNNPDQVHYHG 248
Query: 69 FDIDPTVKDRAPKEI------KDSIIITDGLL---DLPHEGEY--DVVVGNPPFSAKYGR 117
+++ T + A + K+ + + +G D P E Y D V NPP+SAK+
Sbjct: 249 QELNTTTFNLARMNLILHGIDKERMNLNNGDTLDADWPSEEPYQFDSVCMNPPYSAKWSA 308
Query: 118 ITDKKILSKFE-LGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGI-FSNTNLKYVRD 175
+FE G+ + FL F +E G +G++LP G+ F +R
Sbjct: 309 ADQFLSDPRFERFGKLAPKSKADFAFLLHGFYHLKESGTMGIVLPHGVLFRGAAEGTIRQ 368
Query: 176 FILRNSQILAIVALPRNVFTGTTARTAILFAKK 208
+L I A++ LP N+F GT+ T ++ K+
Sbjct: 369 ALLEMGAIDAVIGLPANIFFGTSIPTTVIILKR 401
>pir||JH0634 site-specific DNA-methyltransferase (adenine-specific) (EC
2.1.1.72) TthHB8I - Thermus aquaticus
Length = 428
Score = 70.2 bits (169), Expect = 5e-11
Identities = 61/205 (29%), Positives = 95/205 (45%), Gaps = 20/205 (9%)
Query: 16 LGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLKEK---GFKIYGFDID 72
LG+ TPP + +F+V A A RV +PAC +G FL+ +E G++ G +ID
Sbjct: 16 LGRVETPPGLVRFMVGLAEARKGVRVL----EPACADGPFLRAFREAHGTGYRFVGVEID 71
Query: 73 PTVKDRAPKEIKDSIIITDGLLDLPHEGEYDVVVGNPPF-----SAKYGR--ITDKKILS 125
P D P ++ D LL P E +D+++GNPP+ ++KY + + K L
Sbjct: 72 PHALDLPPWA---EGVVADFLLWEPGEA-FDLILGNPPYGIVGEASKYPIHVLREVKGLY 127
Query: 126 KFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDFILRNSQILA 185
K L + + F+EK R REGG + ++P + +R F+ R +
Sbjct: 128 KKTLSTWKGKYNLYGAFIEKSVRLLREGGTLVFVVPATWLVLDDFSLLRSFLAREGR--T 185
Query: 186 IVALPRNVFTGTTARTAILFAKKGG 210
V VF G +L +KGG
Sbjct: 186 EVYYLGEVFPGRKVSAVVLRFRKGG 210
>gb|AAA27491.1| (M76682) methylase [Thermus thermophilus]
Length = 428
Score = 70.2 bits (169), Expect = 5e-11
Identities = 61/205 (29%), Positives = 95/205 (45%), Gaps = 20/205 (9%)
Query: 16 LGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLKEK---GFKIYGFDID 72
LG+ TPP + +F+V A A RV +PAC +G FL+ +E G++ G +ID
Sbjct: 16 LGRVETPPGLVRFMVGLAEARKGVRVL----EPACADGPFLRAFREAHGTGYRFVGVEID 71
Query: 73 PTVKDRAPKEIKDSIIITDGLLDLPHEGEYDVVVGNPPF-----SAKYGR--ITDKKILS 125
P D P ++ D LL P E +D+++GNPP+ ++KY + + K L
Sbjct: 72 PHALDLPPWA---EGVVADFLLWEPGEA-FDLILGNPPYGIVGEASKYPIHVLREVKGLY 127
Query: 126 KFELGRERKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKYVRDFILRNSQILA 185
K L + + F+EK R REGG + ++P + +R F+ R +
Sbjct: 128 KKTLSTWKGKYNLYGAFIEKSVRLLREGGTLVFVVPATWLVLDDFSLLRSFLAREGR--T 185
Query: 186 IVALPRNVFTGTTARTAILFAKKGG 210
V VF G +L +KGG
Sbjct: 186 EVYYLGEVFPGRKVSAVVLRFRKGG 210
>pir||H70977 hypothetical protein Rv3263 - Mycobacterium tuberculosis (strain
H37RV) >gi|1877318|emb|CAB07090.1| (Z92771) hypothetical
protein Rv3263 [Mycobacterium tuberculosis]
Length = 553
Score = 69.9 bits (168), Expect = 6e-11
Identities = 59/219 (26%), Positives = 100/219 (44%), Gaps = 18/219 (8%)
Query: 1 MTSQKEKHFKRKEKVLGQFFTPPKVAKFIVEFAIAHLENRVTNLACDPACGNGVFLKYLK 60
MT+ K +KV G ++TPP VA+F+ AH ++ +P+CG+G L+ L
Sbjct: 25 MTTFAGKTAASADKVRGGYYTPPAVARFL-----AHWVHQAGPKILEPSCGDGRILRELS 79
Query: 61 EKGFKIYGFDIDPTVKDRAPKEIKDSIIITDGLLDLPHE---GEYDVVVGNPPFSAKYGR 117
+G ++ V A K + + T+ L H+ G +D V GNPP+ ++G
Sbjct: 80 AITDHAHGVEL---VAREAKKSRDFASVDTENLFTWLHKTQLGSWDGVAGNPPY-IRFGN 135
Query: 118 ITDKKILSKFELGRE-----RKSQAIEILFLEKFFRCAREGGIIGVILPFGIFSNTNLKY 172
++ EL R K + F+ AR+GG +G+++P + T
Sbjct: 136 WASEQRDPALELMRRVGLRPTKLTNAWVPFVVASTTLARDGGRVGLVVPAELLQVTYAAQ 195
Query: 173 VRDFILRNSQILAIVALPRNVFTGTTARTAILFAKKGGP 211
+R+F+L + + +V R VF G + +LF GP
Sbjct: 196 LREFLLSRYREITLVTFERLVFDG-ILQEVVLFCGVVGP 233
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169776258
Number of Sequences: 2977
Number of extensions: 7250712
Number of successful extensions: 21620
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 21585
Number of HSP's gapped (non-prelim): 14
length of query: 464
length of database: 189,106,746
effective HSP length: 57
effective length of query: 407
effective length of database: 154,992,987
effective search space: 63082145709
effective search space used: 63082145709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)