BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2247 (PAB2247) DE:PUTATIVE PHOSPHOTRANSFERASE
(183 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75204 probable phosphotransferase PAB2247 - Pyrococcus aby... 378 e-104
pir||F71237 hypothetical protein PH0160 - Pyrococcus horikoshii ... 305 2e-82
pir||B72777 hypothetical protein APE0204 - Aeropyrum pernix (str... 143 1e-33
gi|11498018 conserved hypothetical protein [Archaeoglobus fulgid... 120 1e-26
gi|11499148 conserved hypothetical protein [Archaeoglobus fulgid... 116 2e-25
emb|CAC11265.1| (AL445063) conserved hypothetical protein [Therm... 96 3e-19
pir||T36059 probable phosphotransferase - Streptomyces coelicolo... 96 4e-19
pir||D83638 conserved hypothetical protein PA0054 [imported] - P... 82 5e-15
sp|P39380|YJII_ECOLI HYPOTHETICAL 24.6 KD PROTEIN IN IADA-MCRD I... 81 8e-15
>pir||B75204 probable phosphotransferase PAB2247 - Pyrococcus abyssi (strain
Orsay) >gi|5457590|emb|CAB49081.1| (AJ248283) PUTATIVE
PHOSPHOTRANSFERASE [Pyrococcus abyssi]
Length = 183
Score = 378 bits (960), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MGKAQSVRFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDI 60
MGKAQSVRFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDI
Sbjct: 1 MGKAQSVRFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDI 60
Query: 61 VERDEKERYEVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMK 120
VERDEKERYEVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMK
Sbjct: 61 VERDEKERYEVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMK 120
Query: 121 RQFVHLSLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCIV 180
RQFVHLSLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCIV
Sbjct: 121 RQFVHLSLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCIV 180
Query: 181 GEL 183
GEL
Sbjct: 181 GEL 183
>pir||F71237 hypothetical protein PH0160 - Pyrococcus horikoshii
>gi|3256546|dbj|BAA29229.1| (AP000001) 177aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 177
Score = 305 bits (774), Expect = 2e-82
Identities = 141/177 (79%), Positives = 161/177 (90%)
Query: 7 VRFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEK 66
+RFKVSKLMAYILRH PW F L+PDEEGFV +EE VNA+R+VYPWVT+E+I +IVERDEK
Sbjct: 1 MRFKVSKLMAYILRHSPWEFGLEPDEEGFVSIEELVNAVRKVYPWVTEEYIREIVERDEK 60
Query: 67 ERYEVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHL 126
RYE++ KIRARYGHSYPVIL H+EDKESK LYHGT+R NL+GIMREGIKPMKRQ+VHL
Sbjct: 61 GRYEIRGNKIRARYGHSYPVILRHEEDKESKVLYHGTVRRNLKGIMREGIKPMKRQYVHL 120
Query: 127 SLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCIVGEL 183
S+NYEDAYNTGRRHG +VVVL+IDA+CLR KG+KILKAGKKVRIVK+VPVDCI G L
Sbjct: 121 SINYEDAYNTGRRHGEDVVVLIIDAECLRNKGYKILKAGKKVRIVKHVPVDCISGIL 177
>pir||B72777 hypothetical protein APE0204 - Aeropyrum pernix (strain K1)
>gi|5103595|dbj|BAA79116.1| (AP000058) 256aa long
hypothetical protein [Aeropyrum pernix]
Length = 256
Score = 143 bits (357), Expect = 1e-33
Identities = 73/174 (41%), Positives = 108/174 (61%), Gaps = 1/174 (0%)
Query: 7 VRFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRV-YPWVTKEFILDIVERDE 65
+R ++SK +A ILRH P + ++ EG+ + E V +R+ + WV + I+ + D
Sbjct: 71 MRVRLSKTLAGILRHHPGRYGVRLTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDP 130
Query: 66 KERYEVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVH 125
K RYE++ G+IRARYGHS PV ++ + LYHGT E L IM GI +R VH
Sbjct: 131 KGRYELRNGEIRARYGHSIPVNVEPLPGEPPPILYHGTTEEALPLIMERGIMRGRRLKVH 190
Query: 126 LSLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCI 179
L+ + EDA +TGRRHG+ V VL++D +CLR++G K+ + K V V +VP +CI
Sbjct: 191 LTSSLEDAVSTGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVDWVPPECI 244
>gi|11498018 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450140|pir||F69300 conserved hypothetical protein
AF0406 - Archaeoglobus fulgidus
>gi|2650225|gb|AAB90829.1| (AE001076) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 216
Score = 120 bits (298), Expect = 1e-26
Identities = 63/170 (37%), Positives = 92/170 (54%)
Query: 10 KVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEKERY 69
K+ K ++ +LRH P F L DE G+V+LE ++R Y W I +V DEK+RY
Sbjct: 35 KLGKFISGVLRHFPDKFGLNMDENGWVNLESLARVVKRRYKWANIWLIKALVYSDEKQRY 94
Query: 70 EVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHLSLN 129
E+K KIRARYGHS V L + + LY+GT E ++ GIKP+ +++VHLS
Sbjct: 95 ELKGDKIRARYGHSIDVKLSDFPEAKEDVLYYGTSEEEAHRMLEIGIKPVNQRYVHLSTT 154
Query: 130 YEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCI 179
E + +VL IDA R+ G +I+KA + + + +P I
Sbjct: 155 IEKSKEVASIRTDTPIVLEIDAKKAREDGIRIIKANDLIALAEEIPAKYI 204
>gi|11499148 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450139|pir||H69443 conserved hypothetical protein
AF1553 - Archaeoglobus fulgidus
>gi|2649007|gb|AAB89693.1| (AE000995) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 216
Score = 116 bits (287), Expect = 2e-25
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Query: 8 RFKVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEKE 67
R KVSK ++ +LRH F ++ DE+G+ +L + + + Y V ++ + IV+ D K
Sbjct: 30 RKKVSKFLSGLLRHFGRDFGVRLDEDGWAELRDVLKILSERYG-VGRKHVELIVKFDPKG 88
Query: 68 RYEVKEGKIRARYGHSYPVILDHKEDKE-SKTLYHGTIRENLEGIMREGIKPMKRQFVHL 126
R+E+K G+IRA+YGHS V D E E + LYH T ENL I++ G+ PM+R+ VH+
Sbjct: 89 RFELKNGRIRAKYGHSVEVRTDWSEGGEIPEKLYHATSPENLNSILKTGLLPMRRREVHM 148
Query: 127 SLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVP 175
+ ++A G+RH SN V+L IDA L + G ++ + G KV V +VP
Sbjct: 149 CSSPQEAIEVGKRHSSNPVLLEIDAKGLMQDGIEVRRKG-KVYTVDFVP 196
>emb|CAC11265.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 209
Score = 96.0 bits (235), Expect = 3e-19
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 10 KVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRV--YPWVTKEFILDIVERDEKE 67
+VS+ +A ILRHDP ++++ D G+ + V +R+ W+T + IL + E D K
Sbjct: 8 EVSRTLAAILRHDPERYHIRLDSHGYARIAGIVTVLRKYKGMKWITFDHILSLAETDPKG 67
Query: 68 RYEVKEGKIRARYGHSYPVIL-DHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHL 126
RY+V IRA YGH+ PV L D ED LY+ + + GI P + +VHL
Sbjct: 68 RYQVSGVLIRAMYGHTIPVDLSDLPEDNIPDVLYYQSSAAEAPLVKEAGIYPSDKTWVHL 127
Query: 127 SLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVDCI 179
S Y +Y +G H + +L IDA + G I ++ + + + +P + I
Sbjct: 128 SGTYRRSYVSGLYHIDDPFILRIDARSMIDSGHDIYRSSDDIYLTREIPPEYI 180
>pir||T36059 probable phosphotransferase - Streptomyces coelicolor
>gi|3928729|emb|CAA22225.1| (AL034355) possible
phosphotransferase [Streptomyces coelicolor A3(2)]
Length = 182
Score = 95.6 bits (234), Expect = 4e-19
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 10 KVSKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEKERY 69
KVSK ++ LRH P L PDE G+V+++ V A T++ + +V ++K R+
Sbjct: 8 KVSKYLSKHLRHQPERIGLTPDEGGWVEIDALVAAAAAHGFPFTRQELDHVVATNDKRRF 67
Query: 70 EVKEGKIRARYGHSYPVILDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHLSLN 129
V+ +IRA GHS V L LYHGT+ +LE I EG++PM R VHLS +
Sbjct: 68 AVEGTRIRASQGHSIAVDLRLPVATPPPYLYHGTVARHLEAIRAEGLRPMNRHDVHLSPD 127
Query: 130 YEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVP 175
E A G R G VVL +DA + + G + V + ++VP
Sbjct: 128 RETATRVGARRG-RPVVLPVDAATMHRDGHVFHVSANGVWLTQHVP 172
>pir||D83638 conserved hypothetical protein PA0054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945877|gb|AAG03444.1|AE004445_5 (AE004445)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 182
Score = 81.9 bits (199), Expect = 5e-15
Identities = 54/168 (32%), Positives = 84/168 (49%), Gaps = 4/168 (2%)
Query: 12 SKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEKERYEV 71
SK ++Y+LRH P + L D EG+ D++ + R + + + +VE ++K+R+ +
Sbjct: 10 SKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARDGRALDRMLLGAVVENNDKKRFAL 69
Query: 72 KEG--KIRARYGHSYPVI-LDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHLSL 128
+IRA GHS+ + + + LYHGT L+ I G+ P R VHLS
Sbjct: 70 SADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGSRHHVHLSA 129
Query: 129 NYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPV 176
A GRR+GS V+L IDA + G +A V + + VPV
Sbjct: 130 RRATALEVGRRYGS-PVLLEIDARDMHLAGHLFHQAENGVWLTERVPV 176
>sp|P39380|YJII_ECOLI HYPOTHETICAL 24.6 KD PROTEIN IN IADA-MCRD INTERGENIC REGION (O218)
>gi|1361157|pir||S56556 hypothetical 24.6K protein
(iadA-mcrD intergenic region) - Escherichia coli
>gi|537172|gb|AAA97227.1| (U14003) ORF_o218 [Escherichia
coli] >gi|1790787|gb|AAC77287.1| (AE000503) orf,
hypothetical protein [Escherichia coli K12]
Length = 218
Score = 81.1 bits (197), Expect = 8e-15
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 12 SKLMAYILRHDPWSFNLQPDEEGFVDLEEFVNAIRRVYPWVTKEFILDIVERDEKERYEV 71
SK ++++LRH P + + D EG+ D+++ + ++ +T+ + +V +K+R+
Sbjct: 47 SKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSY 106
Query: 72 K-EGK-IRARYGHSYP-VILDHKEDKESKTLYHGTIRENLEGIMREGIKPMKRQFVHLSL 128
+G+ IRA GHS V + E + LYHGT L+ I ++G+ +R +VHLS
Sbjct: 107 SSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGERHYVHLSA 166
Query: 129 NYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVKYVPVD 177
+ A G RHGS V+L + A + K+G +A V + V V+
Sbjct: 167 DEATARKVGARHGS-PVILTVKAQEMAKRGLPFWQAENGVWLTSTVAVE 214
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.416
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66634213
Number of Sequences: 2977
Number of extensions: 2701519
Number of successful extensions: 6554
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6541
Number of HSP's gapped (non-prelim): 9
length of query: 183
length of database: 189,106,746
effective HSP length: 52
effective length of query: 131
effective length of database: 157,985,422
effective search space: 20696090282
effective search space used: 20696090282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)