BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2249 157842 157528 -105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71237 hypothetical protein PH0158 - Pyrococcus horikoshii ...   125  2e-28

>pir||D71237 hypothetical protein PH0158 - Pyrococcus horikoshii
           >gi|3256544|dbj|BAA29227.1| (AP000001) 106aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 106
           
 Score =  125 bits (310), Expect = 2e-28
 Identities = 65/105 (61%), Positives = 77/105 (72%)

Query: 1   MKALSVIPPIFKLTLTRGPSSSIPITSALNSFLAEVLTGSVDRIMSSGLTPILTFPSTLM 60
           MKAL +IPP  +++LT+ P SSIP T AL +FLAEVLT S+  ++SSGL P LT P T +
Sbjct: 2   MKALKIIPPRLRVSLTKAPKSSIPSTLALKTFLAEVLTPSMKMVISSGLIPTLTLPHTSL 61

Query: 61  GRVILTPLASKMLPLATPSIMFSKPKNLATPSSTGFEKTSLTSPT 105
           G  IL     K+LP ATPSIMFSKP+NLAT S  G EKTSLTSPT
Sbjct: 62  GSSILRSPTFKILPFATPSIMFSKPRNLATSSLLGLEKTSLTSPT 106


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.130    0.355 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34876379
Number of Sequences: 2977
Number of extensions: 1183471
Number of successful extensions: 4358
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4357
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 58
effective length of query: 47
effective length of database: 154,394,500
effective search space: 7256541500
effective search space used: 7256541500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)