BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2250 (PAB2250) DE:Hypothetical protein
         (382 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75203 hypothetical protein PAB2250 - Pyrococcus abyssi (st...   726  0.0
pir||G71236 hypothetical protein PH0153 - Pyrococcus horikoshii ...   591  e-168

>pir||E75203 hypothetical protein PAB2250 - Pyrococcus abyssi (strain Orsay)
           >gi|5457585|emb|CAB49076.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 382
           
 Score =  726 bits (1853), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MRRTLGILMLILSAFLGTIAFRLSTPAIAFYTRDILKASMLSISLVSVSFILARAFSSLF 60
           MRRTLGILMLILSAFLGTIAFRLSTPAIAFYTRDILKASMLSISLVSVSFILARAFSSLF
Sbjct: 1   MRRTLGILMLILSAFLGTIAFRLSTPAIAFYTRDILKASMLSISLVSVSFILARAFSSLF 60

Query: 61  SGLLLEKDKRLIYLGSVTMAGNALIVHLYPLTTSWIQVVGIKILNGLLNGISWPIAQFAI 120
           SGLLLEKDKRLIYLGSVTMAGNALIVHLYPLTTSWIQVVGIKILNGLLNGISWPIAQFAI
Sbjct: 61  SGLLLEKDKRLIYLGSVTMAGNALIVHLYPLTTSWIQVVGIKILNGLLNGISWPIAQFAI 120

Query: 121 ASASPDNVRARVTSVYFFLASVASVIGNYVYAQMAELTLKEQMMVASIFYLLTALSMFLA 180
           ASASPDNVRARVTSVYFFLASVASVIGNYVYAQMAELTLKEQMMVASIFYLLTALSMFLA
Sbjct: 121 ASASPDNVRARVTSVYFFLASVASVIGNYVYAQMAELTLKEQMMVASIFYLLTALSMFLA 180

Query: 181 YYLLFNYVTPKRKGGNVEELHLDPRKVLVITSLIAIITAFASGEITYVYVSEALGLGKGT 240
           YYLLFNYVTPKRKGGNVEELHLDPRKVLVITSLIAIITAFASGEITYVYVSEALGLGKGT
Sbjct: 181 YYLLFNYVTPKRKGGNVEELHLDPRKVLVITSLIAIITAFASGEITYVYVSEALGLGKGT 240

Query: 241 TAKLIGWTGFIATALSYVTSWRADVGKVREMVSLLSMLASLSPLLASIKTPITVFLGIFL 300
           TAKLIGWTGFIATALSYVTSWRADVGKVREMVSLLSMLASLSPLLASIKTPITVFLGIFL
Sbjct: 241 TAKLIGWTGFIATALSYVTSWRADVGKVREMVSLLSMLASLSPLLASIKTPITVFLGIFL 300

Query: 301 ALFSAQSFRPISRKVLVAYRRSSLAIGGLNAVQNVSTFLGGLFFGLAYSLGELHSIITVN 360
           ALFSAQSFRPISRKVLVAYRRSSLAIGGLNAVQNVSTFLGGLFFGLAYSLGELHSIITVN
Sbjct: 301 ALFSAQSFRPISRKVLVAYRRSSLAIGGLNAVQNVSTFLGGLFFGLAYSLGELHSIITVN 360

Query: 361 LGLASFLPFSIALIIIGRKVKV 382
           LGLASFLPFSIALIIIGRKVKV
Sbjct: 361 LGLASFLPFSIALIIIGRKVKV 382


>pir||G71236 hypothetical protein PH0153 - Pyrococcus horikoshii
           >gi|3256539|dbj|BAA29222.1| (AP000001) 403aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 403
           
 Score =  591 bits (1508), Expect = e-168
 Identities = 296/379 (78%), Positives = 338/379 (89%)

Query: 2   RRTLGILMLILSAFLGTIAFRLSTPAIAFYTRDILKASMLSISLVSVSFILARAFSSLFS 61
           +R LGI MLILSAFLGTI FRLSTPAIAFYTRDILKASMLS+SLVSVSFILARAFS+LFS
Sbjct: 17  KRALGITMLILSAFLGTIGFRLSTPAIAFYTRDILKASMLSLSLVSVSFILARAFSALFS 76

Query: 62  GLLLEKDKRLIYLGSVTMAGNALIVHLYPLTTSWIQVVGIKILNGLLNGISWPIAQFAIA 121
           G+LLEK K+ +YLG+  MAGNALIVHLYPLTT+WIQVVGIKI NG LNGISWP AQFAIA
Sbjct: 77  GILLEKGKKFLYLGAFAMAGNALIVHLYPLTTNWIQVVGIKIANGFLNGISWPTAQFAIA 136

Query: 122 SASPDNVRARVTSVYFFLASVASVIGNYVYAQMAELTLKEQMMVASIFYLLTALSMFLAY 181
           SASPD +RARVT++YFFLASVAS++GNY YA +A+LTLK QM++ S FYLLT LSMFLAY
Sbjct: 137 SASPDKIRARVTTIYFFLASVASLLGNYAYAYLADLTLKVQMLIVSFFYLLTTLSMFLAY 196

Query: 182 YLLFNYVTPKRKGGNVEELHLDPRKVLVITSLIAIITAFASGEITYVYVSEALGLGKGTT 241
           Y L+ YVTPKRK    E+L LDP K+L ITSLIAIITAF+SGEITYVYVSEALG+ KG T
Sbjct: 197 YFLYAYVTPKRKERKGEKLPLDPGKILAITSLIAIITAFSSGEITYVYVSEALGIEKGMT 256

Query: 242 AKLIGWTGFIATALSYVTSWRADVGKVREMVSLLSMLASLSPLLASIKTPITVFLGIFLA 301
           AKL+GW  F ATALSY+TSW+ADVG V+EMVSL+S+L+++SPLLASIK P+TVFLG+FLA
Sbjct: 257 AKLLGWISFTATALSYLTSWKADVGMVKEMVSLISILSAISPLLASIKAPVTVFLGVFLA 316

Query: 302 LFSAQSFRPISRKVLVAYRRSSLAIGGLNAVQNVSTFLGGLFFGLAYSLGELHSIITVNL 361
           LFS+QSFRPISRKVLV+Y RSSLAIG LNAVQN+STF+GGLFFGLAY  GE+H + T+NL
Sbjct: 317 LFSSQSFRPISRKVLVSYHRSSLAIGSLNAVQNLSTFVGGLFFGLAYGFGEIHFLTTINL 376

Query: 362 GLASFLPFSIALIIIGRKV 380
           GLASFLPFSI LII+GR +
Sbjct: 377 GLASFLPFSIVLIIMGRYI 395


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.140    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115468779
Number of Sequences: 2977
Number of extensions: 4230168
Number of successful extensions: 15860
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15858
Number of HSP's gapped (non-prelim): 2
length of query: 382
length of database: 189,106,746
effective HSP length: 57
effective length of query: 325
effective length of database: 154,992,987
effective search space: 50372720775
effective search space used: 50372720775
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)