BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2251 (PAB2251) DE:Hypothetical protein
(240 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75203 hypothetical protein PAB2251 - Pyrococcus abyssi (st... 500 e-141
pir||F71236 hypothetical protein PH0152 - Pyrococcus horikoshii ... 434 e-121
gi|11498398 A. fulgidus predicted coding region AF0792 [Archaeog... 198 7e-50
gb|AAK40780.1| Conserved hypothetical protein [Sulfolobus solfat... 142 4e-33
pir||G72525 hypothetical protein APE2180 - Aeropyrum pernix (str... 134 7e-31
emb|CAC12119.1| (AL445066) conserved hypothetical protein [Therm... 73 4e-12
pir||C70380 hypothetical protein aq_926 - Aquifex aeolicus >gi|2... 71 1e-11
pir||G72229 conserved hypothetical protein - Thermotoga maritima... 70 2e-11
gb|AAK40814.1| Conserved hypothetical protein [Sulfolobus solfat... 68 8e-11
>pir||D75203 hypothetical protein PAB2251 - Pyrococcus abyssi (strain Orsay)
>gi|5457584|emb|CAB49075.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 240
Score = 500 bits (1274), Expect = e-141
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MIRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGIT 60
MIRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGIT
Sbjct: 1 MIRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGIT 60
Query: 61 HPPSSPTWRRSNVKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEE 120
HPPSSPTWRRSNVKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEE
Sbjct: 61 HPPSSPTWRRSNVKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEE 120
Query: 121 SFSNAEKFFNSIERKDFEIAVELRGWSEKGIKEFVREFDVIDVTDPLVRIPLHKGKVRYY 180
SFSNAEKFFNSIERKDFEIAVELRGWSEKGIKEFVREFDVIDVTDPLVRIPLHKGKVRYY
Sbjct: 121 SFSNAEKFFNSIERKDFEIAVELRGWSEKGIKEFVREFDVIDVTDPLVRIPLHKGKVRYY 180
Query: 181 RLHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLLDLH 240
RLHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLLDLH
Sbjct: 181 RLHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLLDLH 240
>pir||F71236 hypothetical protein PH0152 - Pyrococcus horikoshii
>gi|3256538|dbj|BAA29221.1| (AP000001) 240aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 240
Score = 434 bits (1105), Expect = e-121
Identities = 196/240 (81%), Positives = 222/240 (91%)
Query: 1 MIRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGIT 60
MI VGTCGFCE + KYFKDFD VE+QQTFY+++QE+TL RW+++APE FTFSIKAFQG+T
Sbjct: 1 MIHVGTCGFCEAREKYFKDFDAVEVQQTFYKVLQEKTLERWRKKAPEEFTFSIKAFQGVT 60
Query: 61 HPPSSPTWRRSNVKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEE 120
HP +SPTWRRSNVKPS+NVGLL+PT+EV HYWR+TLKEA+VLGARFILIQLPRSFKE EE
Sbjct: 61 HPSNSPTWRRSNVKPSKNVGLLRPTNEVLHYWRITLKEAKVLGARFILIQLPRSFKEGEE 120
Query: 121 SFSNAEKFFNSIERKDFEIAVELRGWSEKGIKEFVREFDVIDVTDPLVRIPLHKGKVRYY 180
SF NAEKFFN+I+R DFEI VELRGWSEKG+K FVREFDVIDVTDPL+RIPLHKG V YY
Sbjct: 121 SFENAEKFFNAIDRGDFEIGVELRGWSEKGVKRFVREFDVIDVTDPLLRIPLHKGSVNYY 180
Query: 181 RLHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLLDLH 240
RLHG+YE GKIIYNHSYSDEELKK+RERVLGWN+EESFVFFNN +MC+DAKRFK +LDLH
Sbjct: 181 RLHGKYEGGKIIYNHSYSDEELKKIRERVLGWNVEESFVFFNNTSMCRDAKRFKLILDLH 240
>gi|11498398 A. fulgidus predicted coding region AF0792 [Archaeoglobus fulgidus]
>gi|7483484|pir||H69348 hypothetical protein AF0792 -
Archaeoglobus fulgidus >gi|2649825|gb|AAB90456.1|
(AE001050) A. fulgidus predicted coding region AF0792
[Archaeoglobus fulgidus]
Length = 256
Score = 198 bits (497), Expect = 7e-50
Identities = 102/237 (43%), Positives = 146/237 (61%), Gaps = 13/237 (5%)
Query: 2 IRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITH 61
++VG CGF ++YF+ FD VE+Q+TFY+ + +T +W++ APE F F+IKA+Q ITH
Sbjct: 27 LKVGCCGFPVSMKRYFETFDVVEVQKTFYKPPEVKTAEKWRKSAPEDFEFTIKAWQVITH 86
Query: 62 PPSSPTWRRSNVKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEES 121
PPSSPT++++ +K N G +PT VF W T K A+ L A I+ Q P+SF++ E+
Sbjct: 87 PPSSPTYKKAGIK-FENCGFFRPTEVVFMAWEETKKIAKALKAEIIVFQTPKSFRDTAEN 145
Query: 122 FSNAEKFFNSIERKDFEIAVELRGWSEKGIKEFVREFDVIDVTDPLVRIPLHKGKVRYYR 181
N FF+SI+ F E RGWSE+ ++ E D++ V DP V L+ G++ YYR
Sbjct: 146 MENMRAFFSSID-GSFTFCFEPRGWSEESVRAICEELDLVHVVDPFVSKQLY-GEICYYR 203
Query: 182 LHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLLD 238
LHG Y H Y+D+EL+KL LG + +V FNNV M DA RFK L++
Sbjct: 204 LHG------FDYKHKYTDDELEKL----LGIVDRDGYVMFNNVHMFDDALRFKKLVE 250
>gb|AAK40780.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 265
Score = 142 bits (354), Expect = 4e-33
Identities = 90/244 (36%), Positives = 133/244 (53%), Gaps = 11/244 (4%)
Query: 1 MIRVGTCGFCEGKRKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEG-FTFSIKAFQGI 59
MI++GTCGF RK+F FD +E+Q+TFY + E L + KE + +IKA Q I
Sbjct: 26 MIKIGTCGFT---RKHFNYFDVLEVQETFYNFLSEERLNKLKELSIRNKVELTIKANQII 82
Query: 60 THPPSSPTWRRSN--VKPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKE 117
TH + T++R + +N G +PT EV +TL EA+ L +R I+ Q P SF
Sbjct: 83 THEYNRITYKRFKKIIGDVKNYGYFRPTKEVMQALEITLNEAKFLNSRIIIFQTPPSFAP 142
Query: 118 NEESFSNAEKFFNSIERKDFEIAVELRG-WSE--KGIKEFVREFDVIDVTDPLVRIPLHK 174
N E+ N + FF SI K F E RG W++ + + + + DVI V DP +
Sbjct: 143 NNENIKNLKDFF-SILDKSFIYGWEPRGEWNQNHEVLLKIFSQIDVIHVVDPFKNKSVDD 201
Query: 175 GKVRYYRLHGRYEEGKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFK 234
++RY+RLHG ++ Y + Y+ +L+KL+E VL E +V FNNV DA FK
Sbjct: 202 KQIRYFRLHG-LGSSEVNYRYKYTKADLEKLKEYVLSERKELIYVLFNNVYSFDDALSFK 260
Query: 235 SLLD 238
+++
Sbjct: 261 RMIE 264
>pir||G72525 hypothetical protein APE2180 - Aeropyrum pernix (strain K1)
>gi|5105879|dbj|BAA81191.1| (AP000063) 235aa long
hypothetical protein [Aeropyrum pernix]
Length = 235
Score = 134 bits (335), Expect = 7e-31
Identities = 88/229 (38%), Positives = 125/229 (54%), Gaps = 8/229 (3%)
Query: 16 YFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITHPPSSPTWRR--SNV 73
++K D VE+QQTFY L W+ EAPE F F++KA+ +TH + WRR V
Sbjct: 2 HYKLLDAVEVQQTFYDPPPRSRLDSWRSEAPEDFEFTVKAWMLVTHGYNPRLWRRLKRRV 61
Query: 74 KPSRNV-GLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEESFSNAEKFFNSI 132
R+ G K T E W +TL+ AE L AR I++Q P SF+ + E+ +FFN
Sbjct: 62 AGDRSAYGGFKLTRENLWAWSVTLEAAEALKARIIVVQTPASFEASIENSERIVEFFNKA 121
Query: 133 ERKDFEIAVELRG-WSEKG--IKEFVREFDVIDVTDPL-VRIPLHKGKVRYYRLHGRYEE 188
ER F IA E RG W E + E R+ ++ D L R+P + ++ Y RLHG
Sbjct: 122 ERGGFIIAWEPRGAWWENPNLLAETARKAGLVIAGDVLRGRLPPDEQELLYARLHG-LGG 180
Query: 189 GKIIYNHSYSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRFKSLL 237
G++ Y + Y+D++LK+L + G E++V FNNV DA RFK +L
Sbjct: 181 GEVNYKYKYTDDDLKRLATTICGGLWSEAYVMFNNVYSFDDALRFKQVL 229
>emb|CAC12119.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 240
Score = 72.6 bits (175), Expect = 4e-12
Identities = 62/214 (28%), Positives = 96/214 (43%), Gaps = 30/214 (14%)
Query: 14 RKYFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITHPPSSPTWRRSNV 73
R Y + FDTVEI TFY +R W + +PE F FS+K + ITH V
Sbjct: 31 RYYAQKFDTVEINSTFYSFPNAARVRSWVKGSPENFVFSVKVNRTITH-----------V 79
Query: 74 KPSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEESFSNAEKFFNSIE 133
K ++ E+ ++ + ++LG +L Q P SFK + ++ EK +
Sbjct: 80 KRLKDC-----DEEIGLFYEIIGSLGKMLGC--VLFQFPPSFKYSHDNLIMIEKALD--- 129
Query: 134 RKDFEIAVELR--GWSEKGIKEFVREFDVIDVTDPLVRIPL--HKGKVRYYRLHGRYEEG 189
+ F VE R W + + + + D+ V RIPL + V Y RLHG
Sbjct: 130 -QRFCNVVEFRNISWFSEDARCDLEKSDLHVVAVSSERIPLWIKEDSVVYVRLHGNVNG- 187
Query: 190 KIIYNHSYSDEELKKLRERVLGWNIEESFVFFNN 223
Y Y++E L L +R++ + +V+FNN
Sbjct: 188 ---YATDYNEEYLTDLAQRIIDVKPQSLYVYFNN 218
>pir||C70380 hypothetical protein aq_926 - Aquifex aeolicus
>gi|2983455|gb|AAC07036.1| (AE000714) putative protein
[Aquifex aeolicus]
Length = 252
Score = 71.0 bits (171), Expect = 1e-11
Identities = 65/214 (30%), Positives = 103/214 (47%), Gaps = 32/214 (14%)
Query: 16 YFKDFDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITHPPSSPTWRR-SNVK 74
Y K F+TVEI TFY E+ LRR E P+ F FS+K + ITH +R+ +VK
Sbjct: 42 YSKFFNTVEINSTFYHFPNEKNLRRLYRETPKDFKFSVKVNRNITH------YRKFKDVK 95
Query: 75 PSRNVGLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEESFSNAEKFFNSIER 134
L+K EV R L+E LG +L QLP S+ +E N E+ +++
Sbjct: 96 E-----LIKNFYEV---CRNGLREK--LGC--VLFQLPPSYTYTKE---NLERILENLD- 139
Query: 135 KDFEIAVELR--GWSEKGIKEFVREFDVIDVTDPLVRIP---LHKGKVRYYRLHGRYEEG 189
F+ +E R W + + + ++E +V + +P + + Y R HG+
Sbjct: 140 FGFKNVLEFRHISWWNEEVFKILKERNVTFCSVSAPNLPESLIETSETVYIRFHGKTS-- 197
Query: 190 KIIYNHSYSDEELKKLRERVLGWNIEESFVFFNN 223
Y ++YS+ ELK +++ +E F +FNN
Sbjct: 198 --WYKYNYSERELKSWAKKIKKSGAKEIFAYFNN 229
>pir||G72229 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982204|gb|AAD36698.1|AE001806_8 (AE001806)
conserved hypothetical protein [Thermotoga maritima]
Length = 261
Score = 70.2 bits (169), Expect = 2e-11
Identities = 65/238 (27%), Positives = 103/238 (42%), Gaps = 36/238 (15%)
Query: 20 FDTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITHPPSSPTWRRSNVKPSRNV 79
F VE+ T+Y R+ + + P F F++K +TH W+
Sbjct: 38 FRIVELNFTYYTQPSWRSFVQMLRKTPPDFYFTVKTPGSVTHV----LWKEGK------- 86
Query: 80 GLLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEESFSNAEKFFNSIERKDFEI 139
P ++ ++ R E + L Q P SFK + ++ EK S +E+
Sbjct: 87 ---DPKEDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYP---YEL 140
Query: 140 AVELR--GWSEKGIKEFVREFDVIDVTDPLVRIP-------LHKGKVRYYRLHGRYE--- 187
AVE R W + EF+R + V ++P + Y+R HGR E
Sbjct: 141 AVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWF 200
Query: 188 --EGKIIYNHSYSDEELKKLRERV--LGWNIEESFVFFNNV---AMCKDAKRFKSLLD 238
EG+ Y++ YS+EELK L E V L ++E++VFFNN +A +FK +L+
Sbjct: 201 EAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINALQFKKMLE 258
>gb|AAK40814.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 220
Score = 68.3 bits (164), Expect = 8e-11
Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 39/217 (17%)
Query: 21 DTVEIQQTFYRIMQERTLRRWKEEAPEGFTFSIKAFQGITHPPSSPTWRRSNVKPSRNVG 80
+ VE+ +FYR + + RW + F+ I R VK +R +
Sbjct: 30 NAVEVNMSFYRYPTRKQVERWSK------------FKEI----------RWIVKVNRRIT 67
Query: 81 LLKPTSEVFHYWRLTLKEAEVLGARFILIQLPRSFKENEESFSNAEKFFNSIERKDFEIA 140
+K + F W+ + + L F L QLP +FK N E N ++ F E ++A
Sbjct: 68 HMKRLKD-FQSWKEFQQIVDSLNPDFYLFQLPPTFKRNSE---NEKRVFQFAEVLKDKMA 123
Query: 141 VELRGWSEKGIKEFVREFDV----IDVTDPLVRIPLHKGKVRYYRLHGRYEEGKIIYNHS 196
VE R I+ +++ +V + + P+ + Y RLHGR + Y +
Sbjct: 124 VEFRD-----IQWYLKPLNVTCVIVSIDSPIGTYVIKNNDYIYLRLHGR----DVWYTYD 174
Query: 197 YSDEELKKLRERVLGWNIEESFVFFNNVAMCKDAKRF 233
YS++ELK+L ++++ N + +VFFNN D R+
Sbjct: 175 YSEKELKELADKIISLNPKYVYVFFNNNHWMLDNGRY 211
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.140 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93346759
Number of Sequences: 2977
Number of extensions: 4058509
Number of successful extensions: 9345
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9325
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 189,106,746
effective HSP length: 51
effective length of query: 189
effective length of database: 158,583,909
effective search space: 29972358801
effective search space used: 29972358801
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)