BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2252 (PAB2252) DE:Hypothetical protein
(431 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75203 hypothetical protein PAB2252 - Pyrococcus abyssi (st... 852 0.0
pir||D71236 hypothetical protein PH0150 - Pyrococcus horikoshii ... 684 0.0
pir||F69127 hypothetical protein MTH223 - Methanobacterium therm... 329 4e-89
emb|CAA70986.1| (Y09856) cyclic 2,3-diphospoglycerate-synthetase... 328 7e-89
>pir||B75203 hypothetical protein PAB2252 - Pyrococcus abyssi (strain Orsay)
>gi|5457582|emb|CAB49073.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 431
Score = 852 bits (2176), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Query: 1 MGANMRIALIDGEHYPDVNRWALEKLNVECAVFIGGMEKIGSIEDVERALNVKLYHDKDP 60
MGANMRIALIDGEHYPDVNRWALEKLNVECAVFIGGMEKIGSIEDVERALNVKLYHDKDP
Sbjct: 1 MGANMRIALIDGEHYPDVNRWALEKLNVECAVFIGGMEKIGSIEDVERALNVKLYHDKDP 60
Query: 61 FKALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRPKEWIKLE 120
FKALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRPKEWIKLE
Sbjct: 61 FKALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRPKEWIKLE 120
Query: 121 VPSINIIGTGKRVGKTAIGGFVGRTLKERYRIVIVTMGRGGPEKPEIIRGDKITITPEFL 180
VPSINIIGTGKRVGKTAIGGFVGRTLKERYRIVIVTMGRGGPEKPEIIRGDKITITPEFL
Sbjct: 121 VPSINIIGTGKRVGKTAIGGFVGRTLKERYRIVIVTMGRGGPEKPEIIRGDKITITPEFL 180
Query: 181 VKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVAKTLKPELIV 240
VKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVAKTLKPELIV
Sbjct: 181 VKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVAKTLKPELIV 240
Query: 241 LEGSGASFANVLSDGFITVVSALQGERIKTYMYPLRISLADIVVVTMVEEVSEGEKIKRI 300
LEGSGASFANVLSDGFITVVSALQGERIKTYMYPLRISLADIVVVTMVEEVSEGEKIKRI
Sbjct: 241 LEGSGASFANVLSDGFITVVSALQGERIKTYMYPLRISLADIVVVTMVEEVSEGEKIKRI 300
Query: 301 IKEINPDADVHLTRFAPRLIGNVEGKAIVLTTSQESAKKMAKELERKGIEIAGYSGNLAN 360
IKEINPDADVHLTRFAPRLIGNVEGKAIVLTTSQESAKKMAKELERKGIEIAGYSGNLAN
Sbjct: 301 IKEINPDADVHLTRFAPRLIGNVEGKAIVLTTSQESAKKMAKELERKGIEIAGYSGNLAN 360
Query: 361 RGRLREEMNRFNYDTVIVELKAGAVDVAIREALSNGKKVVFLDNEPVNVDGKNLKSAIKK 420
RGRLREEMNRFNYDTVIVELKAGAVDVAIREALSNGKKVVFLDNEPVNVDGKNLKSAIKK
Sbjct: 361 RGRLREEMNRFNYDTVIVELKAGAVDVAIREALSNGKKVVFLDNEPVNVDGKNLKSAIKK 420
Query: 421 LAERILHDKGG 431
LAERILHDKGG
Sbjct: 421 LAERILHDKGG 431
>pir||D71236 hypothetical protein PH0150 - Pyrococcus horikoshii
>gi|3256536|dbj|BAA29219.1| (AP000001) 435aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 435
Score = 684 bits (1745), Expect = 0.0
Identities = 323/430 (75%), Positives = 390/430 (90%)
Query: 1 MGANMRIALIDGEHYPDVNRWALEKLNVECAVFIGGMEKIGSIEDVERALNVKLYHDKDP 60
MG MR+ALIDGEHYPDVNRWALEKL V+CAVF+GGMEKIGSI DVER L++KLY+D+D
Sbjct: 1 MGYAMRLALIDGEHYPDVNRWALEKLKVDCAVFVGGMEKIGSIRDVERTLSIKLYYDEDI 60
Query: 61 FKALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRPKEWIKLE 120
FKALE+A+EEN++ EVIDLSDEPV+TPE+RFRIAS+LLKRGI Y GADFEF+PKEWIK++
Sbjct: 61 FKALERAIEENEIREVIDLSDEPVLTPEIRFRIASFLLKRGITYIGADFEFKPKEWIKID 120
Query: 121 VPSINIIGTGKRVGKTAIGGFVGRTLKERYRIVIVTMGRGGPEKPEIIRGDKITITPEFL 180
VPSINIIGTGKR+GKTAIGGFVGRTLKE Y++VIVTMGRGGPE PE+IRGD + ITPEFL
Sbjct: 121 VPSINIIGTGKRIGKTAIGGFVGRTLKEEYKVVIVTMGRGGPESPEVIRGDLMEITPEFL 180
Query: 181 VKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVAKTLKPELIV 240
V+++E+GRHAASDHFEDALTAGV T+GCRRCGGGLAGFTFLDV+++GIEVAK+L PE+IV
Sbjct: 181 VEVSEKGRHAASDHFEDALTAGVATVGCRRCGGGLAGFTFLDVLQKGIEVAKSLNPEIIV 240
Query: 241 LEGSGASFANVLSDGFITVVSALQGERIKTYMYPLRISLADIVVVTMVEEVSEGEKIKRI 300
EGSGASFANVLS+GFITVVSALQG+ IK Y+YPLRISL D++VVTM +EV + KI +
Sbjct: 241 FEGSGASFANVLSEGFITVVSALQGKEIKMYLYPLRISLGDLIVVTMADEVKDPGKISSL 300
Query: 301 IKEINPDADVHLTRFAPRLIGNVEGKAIVLTTSQESAKKMAKELERKGIEIAGYSGNLAN 360
IKEINPDAD+HLTRF+PRLIGNVEGKA+V+TTS SAK++ KELE +GI++ G+SGNLAN
Sbjct: 301 IKEINPDADIHLTRFSPRLIGNVEGKAVVVTTSTNSAKRVTKELEDRGIDVVGFSGNLAN 360
Query: 361 RGRLREEMNRFNYDTVIVELKAGAVDVAIREALSNGKKVVFLDNEPVNVDGKNLKSAIKK 420
R +LREE+ + +YDT+IVELKAGAVDVAI+ AL +GK++VFLD EP N+D K+L+ ++K+
Sbjct: 361 RVKLREELKKVSYDTLIVELKAGAVDVAIKSALRSGKRIVFLDYEPKNIDDKDLRESVKE 420
Query: 421 LAERILHDKG 430
LA RI++DKG
Sbjct: 421 LARRIVNDKG 430
>pir||F69127 hypothetical protein MTH223 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621270|gb|AAB84729.1| (AE000809)
unknown [Methanobacterium thermoautotrophicum]
Length = 464
Score = 329 bits (834), Expect = 4e-89
Identities = 195/448 (43%), Positives = 280/448 (61%), Gaps = 26/448 (5%)
Query: 7 IALIDGEHYPDVNRWALEKLN------VECAVFIGGMEKI--GSIEDVERALNVKLYHDK 58
I L+DGEHY V R A+E L+ V+ +FIGG EK+ S E+ + ++
Sbjct: 10 ICLVDGEHYLPVTRAAVETLDSMEHIDVKALIFIGGTEKLRTSSPEEYTEIMGRPVHFGD 69
Query: 59 DP----FKALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRP- 113
DP +K + + + + + V+DLSDEPV+ RFRIAS +L G Y+G DFEF+P
Sbjct: 70 DPHRIPYKLIGELIRKYGADTVMDLSDEPVLDYSKRFRIASVVLGEGAVYRGPDFEFQPL 129
Query: 114 KEWIKLEVPSINIIGTGKRVGKTAIGGFVGRTLKER-YRIVIVTMGRGGPEKPEIIRGDK 172
E+ LE PS+ I+GTGKR+GKTA+ + R + ER Y +V MGRGGPE+PEI+ GD+
Sbjct: 130 TEYDILEKPSLKILGTGKRIGKTAVSAYAARLIHERQYNPCVVAMGRGGPEEPEIVHGDR 189
Query: 173 ITITPEFLVKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVAK 232
I ITPEFL++ +++G HAASDH+EDAL + + T+GCRRCGGG+ G F+ +K G E A
Sbjct: 190 IEITPEFLMEQSDKGVHAASDHWEDALMSRILTVGCRRCGGGMVGDVFITNMKRGAETAN 249
Query: 233 TLKPELIVLEGSGASFANVLSDGFITVVSALQG-ERIKTYMYPLRISLADIVVVTMVEEV 291
L + ++LEGSGA+ V S+ I +V A Q IK + P RI LAD+V+VTM EE
Sbjct: 250 RLDADFVILEGSGAAIPPVKSNRHIVLVGANQPLINIKNFFGPFRIGLADLVIVTMCEEP 309
Query: 292 SEG-EKIKRI---IKEINPDADVHLTRFAPRLIGNVEGKAIVL-TTSQESAKKMAKE-LE 345
G EK++ I I+ INP+A+V T F P+ +G +EGK ++ TT+ +S K + E LE
Sbjct: 310 MAGDEKVREIVDFIESINPEAEVITTVFRPKPLGEIEGKNVLFATTAPDSVKDLLVEYLE 369
Query: 346 RK-GIEIAGYSGNLANRGRLREEMNRF--NYDTVIVELKAGAVDVAIREALSNGKKVVFL 402
+ + G + +L+NR L+ ++ R+ + D ++ ELKA AVDVA ++AL G +V++
Sbjct: 370 SEYSCRVVGTTPHLSNRPLLQRDIERYIEDADVMLTELKAAAVDVATKDALEAGLEVIYC 429
Query: 403 DNEPVNVDG--KNLKSAIKKLAERILHD 428
DN PV DG L AI + ER + D
Sbjct: 430 DNIPVVRDGAQDELDDAIISVVERAIAD 457
>emb|CAA70986.1| (Y09856) cyclic 2,3-diphospoglycerate-synthetase [Methanothermus
fervidus]
Length = 460
Score = 328 bits (832), Expect = 7e-89
Identities = 197/449 (43%), Positives = 280/449 (61%), Gaps = 28/449 (6%)
Query: 7 IALIDGEHYPDVNRWA------LEKLNVECAVFIGGMEKIGSIEDVER---ALNVKLYHD 57
I L+DGEHY V + + LE ++V VFIGG EK+ IED + L ++
Sbjct: 8 ICLVDGEHYFPVVKDSIEILDDLEHIDVVAVVFIGGTEKL-QIEDPKEYSEKLGKPVFFG 66
Query: 58 KDPFK----ALEKALEENDVEEVIDLSDEPVMTPELRFRIASYLLKRGIAYKGADFEFRP 113
DP K ++K +++ + + V+DLSDEPV+ RFRIAS +LK G Y+GADF+F P
Sbjct: 67 PDPKKIPYDVIKKCVKKYNADIVMDLSDEPVVDYTKRFRIASIVLKEGAVYQGADFKFEP 126
Query: 114 -KEWIKLEVPSINIIGTGKRVGKTAIGGFVGRTL-KERYRIVIVTMGRGGPEKPEIIRGD 171
E+ LE PSI IIGTGKR+GKTA+ + R + K +Y +V MGRGGP +PEI+ G+
Sbjct: 127 LTEYDVLEKPSIKIIGTGKRIGKTAVSAYAARVIHKHKYNPCVVAMGRGGPREPEIVEGN 186
Query: 172 KITITPEFLVKIAEQGRHAASDHFEDALTAGVPTIGCRRCGGGLAGFTFLDVVKEGIEVA 231
KI IT E+L++ A++G HAASDH+EDAL + + T+GCRRCGGG+ G TF+ VK G E+A
Sbjct: 187 KIEITAEYLLEQADKGVHAASDHWEDALMSRILTVGCRRCGGGMLGDTFITNVKRGAEIA 246
Query: 232 KTLKPELIVLEGSGASFANVLSDGFITVVSALQGE-RIKTYMYPLRISLADIVVVTMVEE 290
L + +++EGSGA+ V ++ I V A Q I + P RI LAD+V++TM EE
Sbjct: 247 NKLDSDFVIMEGSGAAIPPVKTNRQIVTVGANQPMININNFFGPFRIGLADLVIITMCEE 306
Query: 291 -VSEGEKIKRI---IKEINPDADVHLTRFAPRLIGNVEGKAIVLTTSQES--AKKMAKEL 344
++ EKIK++ IKEINP A+V T F P+ +GNVEGK ++ T+ K+ L
Sbjct: 307 PMATTEKIKKVEKFIKEINPSANVIPTVFRPKPVGNVEGKKVLFATTAPKVVVGKLVNYL 366
Query: 345 ERK-GIEIAGYSGNLANRGRLREEMNRF--NYDTVIVELKAGAVDVAIREALSNGKKVVF 401
E K G ++ G + +L+NR LR ++ ++ D ++ ELKA AVDVA R A+ G VV+
Sbjct: 367 ESKYGCDVVGVTPHLSNRPLLRRDLKKYINKADLMLTELKAAAVDVATRVAIEAGLDVVY 426
Query: 402 LDNEPVNVDGK--NLKSAIKKLAERILHD 428
DN PV +D N+ AI ++ E + D
Sbjct: 427 CDNIPVVIDESYGNIDDAIIEVVEMAIDD 455
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157138118
Number of Sequences: 2977
Number of extensions: 6841286
Number of successful extensions: 18572
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18554
Number of HSP's gapped (non-prelim): 4
length of query: 431
length of database: 189,106,746
effective HSP length: 58
effective length of query: 373
effective length of database: 154,394,500
effective search space: 57589148500
effective search space used: 57589148500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)