BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2257 (PAB2257) DE:transcriptional regulatory protein
(158 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 304 3e-82
pir||B71235 probable transcription regulator - Pyrococcus horiko... 292 2e-78
sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 108 3e-23
dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus h... 108 5e-23
pir||E71028 probable transcription regulator - Pyrococcus horiko... 103 9e-22
pir||A75106 transcription regulatory protein, asnc family PAB193... 103 9e-22
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h... 100 1e-20
pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC... 98 5e-20
sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|... 96 3e-19
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 95 4e-19
pir||G82367 transcription regulator AsnC VC0071 [imported] - Vib... 95 4e-19
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (... 94 6e-19
pir||E71176 probable transcription regulator - Pyrococcus horiko... 94 8e-19
gi|11498748 transcriptional regulatory protein, AsnC family [Arc... 93 1e-18
pir||H71037 probable transcription regulator - Pyrococcus horiko... 91 7e-18
pir||B69026 transcription regulator - Methanobacterium thermoaut... 90 1e-17
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 90 1e-17
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu... 90 1e-17
pir||B71206 probable leucine-responsive regulatory protein - Pyr... 87 1e-16
pir||E75176 transcription regulatory protein, asnc Family PAB039... 87 1e-16
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ... 87 1e-16
sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIV... 87 1e-16
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac... 87 1e-16
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ... 86 2e-16
pir||T35442 transcription regulator - Streptomyces coelicolor >g... 84 7e-16
pir||B70883 probable transcription regulator Rv2779c - Mycobacte... 84 9e-16
sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G6... 83 1e-15
gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [B... 83 2e-15
pir||T45215 transcription regulator lrp [validated] - Sulfolobus... 83 2e-15
emb|CAC13071.1| (AL445503) putative asnC-family transcriptional ... 83 2e-15
pir||A83392 probable transcription regulator PA2028 [imported] -... 82 3e-15
gi|11499312 transcriptional regulatory protein, AsnC family [Arc... 82 3e-15
sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQEC... 79 3e-14
pir||T36151 probable asnC-family transcription regulator - Strep... 79 3e-14
pir||D82983 leucine-responsive regulatory protein PA5308 [import... 78 4e-14
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s... 78 7e-14
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat... 78 7e-14
sp|P56901|LRP_RHIME LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|62... 78 7e-14
sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 77 9e-14
sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73... 77 1e-13
sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 77 1e-13
sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 77 1e-13
sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|36... 77 1e-13
pir||E82382 transcription regulator AsnC family VCA1068 [importe... 77 1e-13
emb|CAC01503.1| (AL391017) putative AsnC-family regulatory prote... 76 2e-13
gb|AAC45745.1| (U42216) orf1; putative regulatory protein of Asn... 76 3e-13
emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis] 76 3e-13
sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G... 75 3e-13
pir||F75341 transcription regulator, AsnC family - Deinococcus r... 75 3e-13
pir||T36701 probable transcription regulator - Streptomyces coel... 74 1e-12
pir||B82142 leucine-responsive regulatory protein VC1904 [import... 74 1e-12
pir||F83046 probable transcription regulator PA4784 [imported] -... 74 1e-12
emb|CAC11402.1| (AL445063) leucine-responsive-regulatory protein... 73 1e-12
gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC famil... 73 2e-12
pir||S74043 transcription regulator homolog c0107 - Sulfolobus s... 73 2e-12
pir||H81182 transcription regulator, AsnC family NMB0573 [import... 73 2e-12
emb|CAC11747.1| (AL445064) transcription regulator related prote... 73 2e-12
pir||E81919 probable AsnC-family transcription regulator NMA0756... 72 4e-12
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus] 71 5e-12
pir||D70981 hypothetical protein Rv3291c - Mycobacterium tubercu... 71 5e-12
gb|AAF71783.1|AF263912_22 (AF263912) ORF2 [Streptomyces noursei] 71 5e-12
pir||H83082 probable transcription regulator PA4508 [imported] -... 71 5e-12
pir||F83150 probable transcription regulator PA3965 [imported] -... 71 9e-12
sp|P42179|BKDR_PSEPU BKD OPERON TRANSCRIPTIONAL REGULATOR >gi|79... 69 2e-11
pir||H71093 hypothetical protein PH1013 - Pyrococcus horikoshii ... 69 2e-11
pir||D83384 probable transcription regulator PA2082 [imported] -... 69 2e-11
pir||A75193 probable transcription regulator PAB2299 - Pyrococcu... 69 3e-11
dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [... 68 6e-11
pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii ... 68 7e-11
pir||T35606 probable Asn-C family transcription regulator - Stre... 68 7e-11
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 304 bits (771), Expect = 3e-82
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MIRVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRK 60
MIRVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRK
Sbjct: 1 MIRVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRK 60
Query: 61 FAALINPFKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRD 120
FAALINPFKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRD
Sbjct: 61 FAALINPFKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRD 120
Query: 121 LQELERFILEKMAKIDGIRSTETSILTSVKKWGYARVF 158
LQELERFILEKMAKIDGIRSTETSILTSVKKWGYARVF
Sbjct: 121 LQELERFILEKMAKIDGIRSTETSILTSVKKWGYARVF 158
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 292 bits (739), Expect = 2e-78
Identities = 148/158 (93%), Positives = 155/158 (97%)
Query: 1 MIRVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRK 60
MI V HSRKV+LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRL++EGVIRK
Sbjct: 1 MITVPHSRKVELDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRK 60
Query: 61 FAALINPFKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRD 120
FAALINPFKAGYEIVAFIA+DAEPAKV+QVVEELAK PEVDVLGIVTGAHDIFMQVTV+D
Sbjct: 61 FAALINPFKAGYEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKD 120
Query: 121 LQELERFILEKMAKIDGIRSTETSILTSVKKWGYARVF 158
LQELERFILEKMAKIDGI+STETSILTSVKKWGYARVF
Sbjct: 121 LQELERFILEKMAKIDGIKSTETSILTSVKKWGYARVF 158
>sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0723
>gi|2129220|pir||C64390 probable transcription regulator
- Methanococcus jannaschii >gi|1591440|gb|AAB98719.1|
(U67519) transcriptional regulatory protein, AsnC family
[Methanococcus jannaschii]
Length = 156
Score = 108 bits (268), Expect = 3e-23
Identities = 55/140 (39%), Positives = 81/140 (57%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D I+ +L DGR SY++I+R + ES++R RV +L EGVI+ + A+I+P K G
Sbjct: 17 MDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKIG 76
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y +VA D EP K V +EL K PEV + TG H I ++ +D +E I K
Sbjct: 77 YNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFNK 136
Query: 132 MAKIDGIRSTETSILTSVKK 151
+ KI+GI+ +I+ K
Sbjct: 137 IGKIEGIKKICPAIILEQMK 156
>dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus halodurans]
Length = 152
Score = 108 bits (266), Expect = 5e-23
Identities = 52/136 (38%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
V+LD++D +IL+LLQ++G+ SY++I++RINV E TVR R+NR+++E V +F ++P K
Sbjct: 2 VKLDDVDMSILQLLQDNGKRSYTDIAKRINVSEGTVRTRINRMLKERVF-EFIIHMDPNK 60
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
G + A I I + K + +L + PEV +G +G HD+ +Q ++ ++L F+
Sbjct: 61 IGLNVQAIIGIKTQLGKQETIATKLNEYPEVRFVGAFSGRHDLILQAYFKNNEDLVNFVN 120
Query: 130 EKMAKIDGIRSTETSI 145
++++KIDGI + + SI
Sbjct: 121 KELSKIDGILAADVSI 136
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 103 bits (255), Expect = 9e-22
Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
Query: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
+V LDEID+ I+++LQ DG+ EIS+ + EST+ R+ +L GVI+KF A+I+P
Sbjct: 2 RVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61
Query: 69 KAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
GY ++AFI + + K +V LAK PE+ + TG +D+ +++ ++ +EL F
Sbjct: 62 ALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNF- 120
Query: 129 LEKMAKIDGIRSTETSILTSVKK 151
L+ + I G+ T T I+ K
Sbjct: 121 LDLIGSIPGVEGTHTMIVLKTHK 143
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 103 bits (255), Expect = 9e-22
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
+V LDEIDR I+++LQ+DG+ EIS+ + EST+ R+ +L GVIRKF A++NP
Sbjct: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
Query: 69 KAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
GY ++AFI I + K +V L K E+ + TG +D+ +++ ++ +EL F
Sbjct: 62 ALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
Query: 129 LEKMAKIDGIRSTETSILTSVKK 151
L+ + I G+ T T I+ K
Sbjct: 121 LDVIGSIPGVEGTHTMIVLKTHK 143
>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
Length = 149
Score = 100 bits (246), Expect = 1e-20
Identities = 52/137 (37%), Positives = 82/137 (58%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+++D D+ IL LL E+GRMSY +I++ + + +R R+++L GVI KF+ +IN K
Sbjct: 1 MKIDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDK 60
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
G ++ AF +D EP + +V E LA+ P+V +TG + M V V D +LE FI
Sbjct: 61 VGKKVSAFFEVDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFIN 120
Query: 130 EKMAKIDGIRSTETSIL 146
E++ + GI E+ IL
Sbjct: 121 EELYALQGITRVESHIL 137
>pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC - Bacillus
subtilis >gi|1929330|emb|CAB07798.1| (Z93767) similar to
leucine regulatory protein, Lrp and AsnC protein that
regulates expression of asnA gene which encodes
asparagine synthetase A [Bacillus subtilis]
>gi|2636136|emb|CAB15628.1| (Z99122) similar to
transcriptional regulator (Lrp/AsnC family) [Bacillus
subtilis]
Length = 158
Score = 97.9 bits (240), Expect = 5e-20
Identities = 48/135 (35%), Positives = 82/135 (60%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LDE D+ IL +L E+GR+SY+++ +R+++ V+AR+N+LI GVI KF A+INP K G
Sbjct: 12 LDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKIG 71
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+ F ++ EP + +V +L + P V L +TG + M + QE+E F+ ++
Sbjct: 72 IHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTNDQEMEEFLTKR 131
Query: 132 MAKIDGIRSTETSIL 146
+ + G+ S + +L
Sbjct: 132 LYPLRGVVSVDCQML 146
>sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|pir||F69592 azlBCD
operon transcription repressor azlB - Bacillus subtilis
>gi|1926280|emb|CAA71939.1| (Y11043) transcriptional
regulator [Bacillus subtilis] >gi|1934649|gb|AAB80900.1|
(U93876) regulatory protein YrdG [Bacillus subtilis]
>gi|2635117|emb|CAB14613.1| (Z99117) transcriptional
regulator (Lrp/AsnC family) [Bacillus subtilis]
Length = 157
Score = 95.6 bits (234), Expect = 3e-19
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ LDE D+AILR LQED +S +S++I + S AR L+ G+I+KF +++ K
Sbjct: 3 IMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKK 62
Query: 70 AGYEIVAFIAIDAEPAK---VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
G E+ A I+ P + +E++ K P+V +TG+HD +++ +D++
Sbjct: 63 LGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRN 122
Query: 127 FILEKMAKIDGIRSTETSILTSVKK 151
FI++ + + I +TSI+ S +K
Sbjct: 123 FIIDSLMQNPAISGVDTSIVMSTEK 147
>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
>gi|2129315|pir||H64318 transcription regulator homolog
- Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
(U67472) transcriptional regulator, putative
[Methanococcus jannaschii]
Length = 148
Score = 95.2 bits (233), Expect = 4e-19
Identities = 49/142 (34%), Positives = 81/142 (56%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD ID ILR+L + R S+ EI R + + E TVR RV RL +G+I F A INP G
Sbjct: 2 LDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNLG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+E+VA + + +P+KV + + +L +L E+ L TG +D ++D++ L +F+ EK
Sbjct: 62 FEVVAILGLYIKPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFLAEK 121
Query: 132 MAKIDGIRSTETSILTSVKKWG 153
+ + + + +++ K G
Sbjct: 122 IYPLVNVNGCKVTLVLRTFKDG 143
>pir||G82367 transcription regulator AsnC VC0071 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654467|gb|AAF93249.1|
(AE004098) transcriptional regulator AsnC [Vibrio
cholerae]
Length = 153
Score = 95.2 bits (233), Expect = 4e-19
Identities = 46/136 (33%), Positives = 85/136 (61%), Gaps = 1/136 (0%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
+LDE+DRAIL++L +D R Y+E++++ NV +T+ R+ ++ +I+ ++N K
Sbjct: 6 KLDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRIEKMKAADIIQGTEVVVNTKKL 65
Query: 71 GYEIVAFIAIDAEPAK-VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
GY++ FI I+ A+ + +L L EV TGA++IF+++ R ++EL+ ++
Sbjct: 66 GYDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYTTGAYNIFVKLMCRSIEELQHVLI 125
Query: 130 EKMAKIDGIRSTETSI 145
+K+ ID ++STET I
Sbjct: 126 DKLQAIDEVQSTETLI 141
>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
solfataricus]
Length = 153
Score = 94.4 bits (231), Expect = 6e-19
Identities = 50/140 (35%), Positives = 89/140 (62%), Gaps = 2/140 (1%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD+ID+ IL +LQ+D R+ +S +++ +N+ E+T+ R+ RL GVI+ F I+ K G
Sbjct: 8 LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+VAFI I A+P K ++++L ++ E+ + VTG + ++V V ++L + +L+K
Sbjct: 68 LSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAK-VLDK 126
Query: 132 MAKIDGIRSTETS-ILTSVK 150
+ +DG+ ST T +L S+K
Sbjct: 127 IGNMDGVTSTYTMLVLRSIK 146
>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
>gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 94.0 bits (230), Expect = 8e-19
Identities = 49/143 (34%), Positives = 83/143 (57%), Gaps = 1/143 (0%)
Query: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
K++LD +DR IL +L +D R SY EI++ +NV T+ R+ +L GVI+ F +N
Sbjct: 3 KMELDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYE 62
Query: 69 KAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
GY++ A I I A+ K+R++ +AK V + VTG +DI + R+ +++ RF+
Sbjct: 63 SIGYDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFV 122
Query: 129 LEKMAKIDGIRSTETSILTSVKK 151
+ + IDG+ T T ++ + K
Sbjct: 123 -KGVLSIDGVEKTNTHVVLEIVK 144
>gi|11498748 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444108|pir||C69393 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2649438|gb|AAB90095.1| (AE001024) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 149
Score = 93.2 bits (228), Expect = 1e-18
Identities = 50/142 (35%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
V++DE+D ILR LQ+D R S EIS ++ V E TV R+N++ + G+I+KF +++
Sbjct: 2 VKIDEVDIKILRELQDDARKSLKEISEKVGVAEGTVYNRINKMRKIGLIKKFIPVVDYSM 61
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
GY+++A I I AE + ++ +E+AK V + VTG +DI + +D L F+
Sbjct: 62 LGYDLIAIIGITAEGGYLTEIEKEIAKERNVTAVYDVTGDYDIIVVAKFKDRDSLNAFV- 120
Query: 130 EKMAKIDGIRSTETSILTSVKK 151
+++A +D + T T ++ +V K
Sbjct: 121 KRIAGMDKVLKTYTMLVLNVVK 142
>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
>gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 141
Score = 90.9 bits (222), Expect = 7e-18
Identities = 46/135 (34%), Positives = 76/135 (56%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D+ IL +L +D R ++EI++++ + E+ VR RV L +G+I + INP K G
Sbjct: 2 IDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKLG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y +V +D P K+ +V E+L + V L + +G H I + RD ++L I K
Sbjct: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADIISNK 121
Query: 132 MAKIDGIRSTETSIL 146
+ KIDG+ +I+
Sbjct: 122 IGKIDGVTKVCPAII 136
>pir||B69026 transcription regulator - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622301|gb|AAB85682.1| (AE000887)
transcriptional regulator [Methanobacterium
thermoautotrophicum]
Length = 161
Score = 90.1 bits (220), Expect = 1e-17
Identities = 53/142 (37%), Positives = 81/142 (56%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
V++D+IDR I+ LL EDGRMSY ISR ++V TV RV +L+++GVI+KF +I+ K
Sbjct: 10 VKIDDIDRKIIDLLNEDGRMSYRNISRILDVSVGTVHNRVEKLVKKGVIKKFVPIIDHSK 69
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
GY++ A I + + +R A V + VTG D + RD EL+ FI
Sbjct: 70 LGYKLTAIIGVKVKGGVLRNWETRTAYHKNVLAVYDVTGEFDAILIGKFRDTGELDSFIK 129
Query: 130 EKMAKIDGIRSTETSILTSVKK 151
+++ D R+ ++L VK+
Sbjct: 130 GLLSEGDVQRTYTQTVLNIVKE 151
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 90.1 bits (220), Expect = 1e-17
Identities = 46/140 (32%), Positives = 82/140 (57%), Gaps = 1/140 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LDE+D+ I+ +L +D R+SY EI++ +NV T+ R+ +L GVI+ F +N G
Sbjct: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y++ A + I A+ K+R++ +AK V + VTG +DI + ++ +++ RF+ +
Sbjct: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV-KG 120
Query: 132 MAKIDGIRSTETSILTSVKK 151
+ IDG+ T T ++ V K
Sbjct: 121 VLSIDGVEKTNTHVVLEVVK 140
>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
>gi|4416541|gb|AAD20389.1| (M97860) transcriptional
regulator LrpA [Pyrococcus furiosus]
Length = 141
Score = 90.1 bits (220), Expect = 1e-17
Identities = 44/135 (32%), Positives = 78/135 (57%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D+ IL +L++D R ++EI++++ + E+ VR RV L +G+I + INP K G
Sbjct: 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y +V +D +P K+ +V E+L + V L + +G H I + +D ++L I K
Sbjct: 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNK 121
Query: 132 MAKIDGIRSTETSIL 146
+ KI+G+ +I+
Sbjct: 122 IGKIEGVTKVCPAII 136
>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
long hypothetical leucine-responsive regulatory protein
[Pyrococcus horikoshii]
Length = 150
Score = 86.6 bits (211), Expect = 1e-16
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD++DR +L L+ + R + + +S+++ +P +TV R+ RL+ EG+I KF N K
Sbjct: 5 LDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNYKKLN 64
Query: 72 YEIVAFIAIDAEP---AKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
AFI I +P R+V E++A++P V + +V G D+ ++V + +E+ R +
Sbjct: 65 LGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGRIV 124
Query: 129 LEKMAKIDGIRSTETSI 145
++K+ +I G+ T T +
Sbjct: 125 IDKLREIRGVGQTVTMV 141
>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
(AJ248284) transcriptional regulatory protein, AsnC f
amily [Pyrococcus abyssi]
Length = 141
Score = 86.6 bits (211), Expect = 1e-16
Identities = 45/135 (33%), Positives = 75/135 (55%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D+ IL +L +D R ++EI++ + + E+ VR RV L +G+I + INP K G
Sbjct: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y +V +D P K+ +V E+L + V L + +G H I + +D ++L I K
Sbjct: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
Query: 132 MAKIDGIRSTETSIL 146
+ KIDG+ +I+
Sbjct: 122 IGKIDGVTKVCPAII 136
>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
>gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 150
Score = 86.6 bits (211), Expect = 1e-16
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD++DR +L L+ + R + + +S+++ +P +TV R+ RL+ EG+I +F N K
Sbjct: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
Query: 72 YEIVAFIAIDAEP---AKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
AFI I +P RQV E++AK+P V + I+ G D+ ++V + +E+ R +
Sbjct: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
Query: 129 LEKMAKIDGIRSTETSI 145
++K+ +I G+ T T +
Sbjct: 125 IDKLREIRGVGQTVTMV 141
>sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIVATOR
>gi|1262197|gb|AAC43979.1| (U39263) Prp [Agrobacterium
tumefaciens] >gi|1588857|prf||2209368D prp gene
[Agrobacterium tumefaciens]
Length = 156
Score = 86.6 bits (211), Expect = 1e-16
Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 4 VAHSRKVQ-LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFA 62
+A+S K LD D IL L EDGRMS ++S+R+ + ++ + R+ RL+ EG I F
Sbjct: 1 MANSHKTDDLDHFDLKILEALSEDGRMSVLQLSKRVGLSKTPCQTRLKRLVDEGYILGFR 60
Query: 63 ALINPFKAGYEIVAFIAIDAEPAKVRQVVE---ELAKLPEVDVLGIVTGAHDIFMQVTVR 119
A++NP K G + +AF + + + + E + K+ EV+ ++ GA D ++V
Sbjct: 61 AVLNPQKLGVDHIAFAEVKLSDTREKALEEFNTAVRKIKEVEECHMIAGAFDYLLKVRTS 120
Query: 120 DLQELERFILEKMAKIDGIRSTET-SILTSVKKWG 153
D+++ R + EK++ + + +T T ++ SVK+ G
Sbjct: 121 DIRKYRRVLGEKISSLPSVSNTSTFVVMQSVKETG 155
>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
Length = 149
Score = 86.6 bits (211), Expect = 1e-16
Identities = 43/137 (31%), Positives = 76/137 (55%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ +D+ DR ILR LQ D R +SEI+R I++ +TV RV+RL GVIR + A ++P
Sbjct: 1 MDVDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKA 60
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
G AF+ + E + + ++ L + V + + TG D+ +++ D L +
Sbjct: 61 VGLGTTAFVGLRVEQGREDETLDRLTGIEGVREVNLTTGEWDVILRLVAEDTDHLRALMF 120
Query: 130 EKMAKIDGIRSTETSIL 146
E++A +DG ++T ++
Sbjct: 121 EEIADMDGFARSQTMVV 137
>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory protein.
[Streptomyces coelicolor A3(2)]
Length = 165
Score = 85.8 bits (209), Expect = 2e-16
Identities = 47/138 (34%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
++E+DR I++LL +DGRMSY+++ + + S V RV RL + GVIR +AA+++P G
Sbjct: 20 MEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG 79
Query: 72 YEIVAFIAIDA-EPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
+ AFI++ +P+ + + LA +PE++ V G + ++V V ELE +L
Sbjct: 80 LPMTAFISVKPFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEE-LLA 138
Query: 131 KMAKIDGIRSTETSILTS 148
++ + G+ ST T+++ S
Sbjct: 139 RVRSLAGV-STRTTVVLS 155
>pir||T35442 transcription regulator - Streptomyces coelicolor
>gi|3319730|emb|CAA19896.1| (AL031035) transcriptional
regulatoty protein [Streptomyces coelicolor A3(2)]
Length = 166
Score = 84.3 bits (205), Expect = 7e-16
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
QLD + AI+ LQEDGR Y+ I + + + E+ VR RV +L+ +GV+ + A+ +P
Sbjct: 20 QLDAVSLAIIEQLQEDGRRPYAAIGKAVGLSEAAVRQRVQKLLDQGVM-QIVAVTDPLTV 78
Query: 71 GYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
G+ A + ++ E V V E L+ + E + + + G+ D+ ++V D L I
Sbjct: 79 GFRRQAMVGVNVE-GDVESVAEALSAMSECEYVVMTAGSFDLMVEVVCEDDDHLLEVINR 137
Query: 131 KMAKIDGIRSTETSILTSVKKWGY 154
++ + G+RSTE+ + +KK Y
Sbjct: 138 RIRAVPGVRSTESFVYMKLKKQTY 161
>pir||B70883 probable transcription regulator Rv2779c - Mycobacterium
tuberculosis (strain H37RV) >gi|2624301|emb|CAA15574.1|
(AL008967) hypothetical protein Rv2779c [Mycobacterium
tuberculosis]
Length = 171
Score = 83.9 bits (204), Expect = 9e-16
Identities = 44/142 (30%), Positives = 78/142 (53%), Gaps = 3/142 (2%)
Query: 8 RKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINP 67
R +LDE+DR IL LL D RM + ++ + + ST RV RL+ GVIR F I+P
Sbjct: 20 RPAELDEVDRRILSLLHGDARMPNNALADTVGIAPSTCHGRVRRLVDLGVIRGFYTDIDP 79
Query: 68 FKAGYEIVAFIAIDAEPA---KVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQEL 124
G + A I+++ + + K+R ++++ + +V + + GA D + V RD ++L
Sbjct: 80 VAVGLPLQAMISVNLQSSARGKIRSFIQQIRRKRQVMDVYFLAGADDFILHVAARDTEDL 139
Query: 125 ERFILEKMAKIDGIRSTETSIL 146
F++E + + T+TS++
Sbjct: 140 RSFVVENLNADADVAGTQTSLI 161
>sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G64077 regulatory protein
asnC - Haemophilus influenzae (strain Rd KW20)
>gi|1573550|gb|AAC22221.1| (U32738) transcriptional
regulatory protein (asnC) [Haemophilus influenzae Rd]
Length = 150
Score = 83.5 bits (203), Expect = 1e-15
Identities = 45/135 (33%), Positives = 76/135 (55%), Gaps = 1/135 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+D +D+ ILR+L +D R Y+E+++ V T+ RV ++ + G+I+ +I+ K G
Sbjct: 4 IDSLDQKILRVLTKDARTPYAEMAKNFGVSPGTIHVRVEKMRQSGIIKGTKVIIDERKLG 63
Query: 72 YEIVAFIAIDAEPAK-VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
Y++ FI I + AK +V+++L EV TG + IF++V + EL +
Sbjct: 64 YDVCCFIGIILKSAKDYEKVIKKLESFDEVVEAYYTTGNYSIFLKVMTHTIAELHSVLAT 123
Query: 131 KMAKIDGIRSTETSI 145
K+ ID I+STET I
Sbjct: 124 KIQLIDEIQSTETLI 138
>gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [Bradyrhizobium
japonicum]
Length = 153
Score = 82.7 bits (201), Expect = 2e-15
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
++LD +DR IL +LQEDGR++ E++ RI + +++ R+ RL REG + + A +NP +
Sbjct: 1 MELDRLDRRILSILQEDGRIANVELAERIGLSPTSIGERLKRLQREGFVEGYGARLNPHR 60
Query: 70 AGYEIVAFIAI---DAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
G ++ F+ + P + + PEV +V G D ++ + D+ R
Sbjct: 61 LGLGLLVFVEVLLDKTTPDNFERFARAVKLAPEVLECHMVAGGFDYLVKARLADMTAYRR 120
Query: 127 FILEKMAKIDGIRSTET-SILTSVKKWG 153
F+ E + + G+R T T +++ +K+ G
Sbjct: 121 FLGETLLSMPGVRETRTYAVMEEIKRDG 148
>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
>gi|2760520|emb|CAA73351.1| (Y12821)
leucine-responsive-regulatory protein [Sulfolobus
acidocaldarius]
Length = 155
Score = 82.7 bits (201), Expect = 2e-15
Identities = 44/144 (30%), Positives = 84/144 (57%), Gaps = 1/144 (0%)
Query: 8 RKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINP 67
+K+++D ID+ +L L +D R+S ++ +NV +T+ R+ RL++EGV++ F ALI+
Sbjct: 5 KKIEIDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDY 64
Query: 68 FKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERF 127
K GY + + + I + + + +E++ L V + V G +D+ + R +++L+ F
Sbjct: 65 SKLGYPVTSILMIKVDGKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTF 124
Query: 128 ILEKMAKIDGIRSTETSILTSVKK 151
I + + K I T TSI+ +V K
Sbjct: 125 I-KSLLKNPKIERTYTSIVLNVVK 147
>emb|CAC13071.1| (AL445503) putative asnC-family transcriptional regulatory protein
[Streptomyces coelicolor A3(2)]
Length = 158
Score = 82.7 bits (201), Expect = 2e-15
Identities = 45/134 (33%), Positives = 77/134 (56%), Gaps = 1/134 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE+D ILRLL E R S E +R + + T++AR++RL R+GVI A ++P G
Sbjct: 3 VDELDTRILRLLLEQPRTSVREYARLLGIARGTLQARLDRLERDGVITGTAPSLSPAALG 62
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+ ++AF+ I+ + +V E LA +PE+ +TG D+ +V RD LE +++K
Sbjct: 63 HPVLAFVHIEVTQGHLDEVGEALAAVPEIVEAFSITGGGDLLTRVVARDNAHLED-VVQK 121
Query: 132 MAKIDGIRSTETSI 145
+ + G+ T + +
Sbjct: 122 LISLPGVVRTRSEV 135
>pir||A83392 probable transcription regulator PA2028 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948033|gb|AAG05416.1|AE004629_5 (AE004629) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 157
Score = 81.9 bits (199), Expect = 3e-15
Identities = 48/142 (33%), Positives = 79/142 (54%), Gaps = 3/142 (2%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ LD D+ IL LLQE+ +S +EI+ RI + +S R+ RL EGVIRK L++ K
Sbjct: 3 IPLDIYDQRILALLQEESSLSTAEIAERIGLSQSPCWRRIQRLKEEGVIRKQVTLLDRKK 62
Query: 70 AGY--EIVAFIAIDAEPAK-VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
G ++ A I ++A K + E + + PEV ++ GA D +++ RD++ ER
Sbjct: 63 IGLNTQVFAQIKLNAHGRKNLTDFAEAMHQFPEVLECHVLMGAVDFMLRIVTRDIESYER 122
Query: 127 FILEKMAKIDGIRSTETSILTS 148
F EK++ + GI+ + + S
Sbjct: 123 FFFEKLSAVPGIQEVNSIVALS 144
>gi|11499312 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444087|pir||B69465 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2648831|gb|AAB89528.1| (AE000984) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 138
Score = 81.9 bits (199), Expect = 3e-15
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D I+ LL + R+ + I++ +NV E+ VR R+ L R I + A+IN K G
Sbjct: 1 MDEKDLKIIELLVSNARIPKTRIAKELNVTEAAVRKRIANLERREEILGYKAIINYKKVG 60
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+ +D +P K+ +VVEEL L V L + TG H I ++ + +QEL I +K
Sbjct: 61 LS-ASLTGVDVDPDKLWKVVEELKDLESVKSLWLTTGDHTIMAEIIAKSVQELSE-IHQK 118
Query: 132 MAKIDGIRSTETSILTSVKK 151
+A+++G++ SI+T + K
Sbjct: 119 IAEMEGVKRVCPSIITDIVK 138
>sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQECE1 regulatory protein
asnC - Escherichia coli >gi|290592|gb|AAA62095.1|
(L10328) regulatory protein [Escherichia coli]
>gi|455179|gb|AAA24252.1| (K00826) 17K protein
[Escherichia coli] >gi|1790182|gb|AAC76766.1| (AE000451)
regulator for asnA, asnC and gidA [Escherichia coli K12]
>gi|223848|prf||1002215B protein 17KD [Escherichia coli]
Length = 152
Score = 78.8 bits (191), Expect = 3e-14
Identities = 43/136 (31%), Positives = 75/136 (54%), Gaps = 1/136 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+D +DR IL L + R +Y+E++++ V T+ RV ++ + G+I ++P + G
Sbjct: 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query: 72 YEIVAFIAIDAEPAK-VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
Y++ FI I + AK + +L L EV TG + IF++V R + L+ ++
Sbjct: 66 YDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLIN 125
Query: 131 KMAKIDGIRSTETSIL 146
K+ ID I+STET I+
Sbjct: 126 KIQTIDEIQSTETLIV 141
>pir||T36151 probable asnC-family transcription regulator - Streptomyces
coelicolor >gi|5531377|emb|CAB51009.1| (AL096852)
putative asnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 163
Score = 78.8 bits (191), Expect = 3e-14
Identities = 44/135 (32%), Positives = 73/135 (53%), Gaps = 1/135 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+D +D I+ LL + R+ E+SRR+ V T +AR++RL GVIR F ++P G
Sbjct: 6 IDRLDGRIIGLLAREPRIGVLEMSRRLGVARGTAQARLDRLQSNGVIRGFGPEVDPAALG 65
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Y + AF ++ + V LA +PEV L TG D+ ++ R +L+R ++++
Sbjct: 66 YPVTAFATLEIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQR-VIDR 124
Query: 132 MAKIDGIRSTETSIL 146
+ DGI T+I+
Sbjct: 125 VVGFDGIVRAATAIV 139
>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
leucine-responsive regulatory protein [Pseudomonas
aeruginosa]
Length = 162
Score = 78.4 bits (190), Expect = 4e-14
Identities = 45/149 (30%), Positives = 82/149 (54%), Gaps = 5/149 (3%)
Query: 2 IRVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKF 61
+R H K +LD+IDR ILR+LQE+GR+S++E+ R+ + + RV RL REG+I +
Sbjct: 1 MRTQHQSKRELDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGY 60
Query: 62 AALINPFKAGYEIVAFIAIDAEPAKVRQVVEE----LAKLPEVDVLGIVTGAHDIFMQVT 117
A +NP ++ F+ I + K EE + KLP V +V+G D ++
Sbjct: 61 HARLNPQHLKASLLVFVEISLD-YKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKAR 119
Query: 118 VRDLQELERFILEKMAKIDGIRSTETSIL 146
+ ++ + + + + K+ +R +++ I+
Sbjct: 120 ISEMASYRKLLGDILLKLPHVRESKSYIV 148
>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
Length = 157
Score = 77.6 bits (188), Expect = 7e-14
Identities = 45/144 (31%), Positives = 78/144 (53%), Gaps = 1/144 (0%)
Query: 8 RKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINP 67
R V LD IDR +L L D R S ++ +NV +T+ R+ R+++EG+I+ F AL++
Sbjct: 7 RTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDY 66
Query: 68 FKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERF 127
K G+ + I + + + +E+A V + V G +D+ + R ++EL+ F
Sbjct: 67 SKLGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSF 126
Query: 128 ILEKMAKIDGIRSTETSILTSVKK 151
L+++ K I T TSI+ +V K
Sbjct: 127 -LKQLLKNPKIERTYTSIVLNVVK 149
>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
[Sulfolobus solfataricus]
Length = 157
Score = 77.6 bits (188), Expect = 7e-14
Identities = 45/144 (31%), Positives = 78/144 (53%), Gaps = 1/144 (0%)
Query: 8 RKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINP 67
R V LD IDR +L L D R S ++ +NV +T+ R+ R+++EG+I+ F AL++
Sbjct: 7 RTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDY 66
Query: 68 FKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERF 127
K G+ + I + + + +E+A V + V G +D+ + R ++EL+ F
Sbjct: 67 SKLGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSF 126
Query: 128 ILEKMAKIDGIRSTETSILTSVKK 151
L+++ K I T TSI+ +V K
Sbjct: 127 -LKQLLKNPKIERTYTSIVLNVVK 149
>sp|P56901|LRP_RHIME LEUCINE-RESPONSIVE REGULATORY PROTEIN
>gi|6224915|gb|AAF06012.1|AF193023_6 (AF193023) Lrp
[Sinorhizobium meliloti]
Length = 156
Score = 77.6 bits (188), Expect = 7e-14
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
+V+LD ID ILR LQ+DGR++ E++ R+ + RV +L GVIR + AL+N
Sbjct: 4 RVELDAIDMKILRELQDDGRITNVELAERVGISAPPCLRRVRKLEEAGVIRGYRALLNAS 63
Query: 69 KAGYEIVAFIAIDAE---PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELE 125
GY++VAF + + A ++ A P V +V+G D +Q +L +
Sbjct: 64 ALGYDLVAFCMVGLKHQSDANLKAFAARTASWPLVREAWMVSGESDFLLQCVAENLASFQ 123
Query: 126 RFILEKMAKIDGIRSTETSI 145
F++E++ + + + T +
Sbjct: 124 DFVIEELTATENVDTVRTML 143
>sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120007|pir||S59992
transcription regulator lrp, leucine-responsive -
Klebsiella pneumoniae >gi|407918|gb|AAA75465.1| (U02274)
Lrp [Klebsiella pneumoniae]
Length = 164
Score = 77.3 bits (187), Expect = 9e-14
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I+ + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73065|pir||RGECLR
leucine-responsive transcription regulator lrp
[validated] - Escherichia coli >gi|146665|gb|AAA24089.1|
(M35869) leucine-responsive-regulatory protein (Lrp)
[Escherichia coli] >gi|216586|dbj|BAA01880.1| (D11105)
leucine responsive regulatory protein [Escherichia coli]
>gi|407914|gb|AAA75439.1| (U02272) Lrp [Enterobacter
aerogenes] >gi|1651411|dbj|BAA35614.1| (D90726)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1651417|dbj|BAA35621.1| (D90727)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1787116|gb|AAC73975.1| (AE000191) regulator
for leucine (or lrp) regulon and high-affinity
branched-chain amino acid transport system [Escherichia
coli K12]
Length = 164
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I+ + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120006|pir||S59993
transcription regulator lrp, leucine-responsive -
Salmonella typhimurium >gi|407916|gb|AAA75467.1|
(U02273) Lrp [Salmonella typhimurium]
Length = 164
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I+ + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 72 YEIVAFIAIDAE---PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGGPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120005|pir||S59991
transcription regulator lrp, leucine-responsive -
Serratia marcescens >gi|407921|gb|AAA75466.1| (U02276)
Lrp [Serratia marcescens]
Length = 164
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I+ + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|3603469|gb|AAD12584.1|
(AF090144) leucine-responsive regulatory protein
[Klebsiella aerogenes]
Length = 164
Score = 76.9 bits (186), Expect = 1e-13
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I+ + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>pir||E82382 transcription regulator AsnC family VCA1068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658514|gb|AAF96962.1| (AE004432) transcriptional
regulator, AsnC family [Vibrio cholerae]
Length = 160
Score = 76.9 bits (186), Expect = 1e-13
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ LD +DR ILR+L GR+ E+++ +N+ S RV RL +EG IR + A ++P K
Sbjct: 1 MSLDRVDRDILRILHAKGRLPVVELAKLVNLTTSPCSERVKRLEKEGYIRGYHADLDPGK 60
Query: 70 AGYEIVAFIAIDAEPAK---VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
G ++ FI I + + + +A +PE++ ++G D ++V V+D++ +
Sbjct: 61 LGLDVQVFIHIRLDQSSFSIFERFAHAVADIPEIEACYSLSGDFDTMIKVRVKDMKAYQA 120
Query: 127 FILEKMAKIDGIRSTETSILTSVKKWGY 154
F+ K+ + G+ T + + K +
Sbjct: 121 FMSGKLGSLPGVIQTRSEFVIEEHKTSF 148
>emb|CAC01503.1| (AL391017) putative AsnC-family regulatory protein [Streptomyces
coelicolor A3(2)]
Length = 167
Score = 76.1 bits (184), Expect = 2e-13
Identities = 46/144 (31%), Positives = 75/144 (51%), Gaps = 2/144 (1%)
Query: 6 HSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALI 65
+SR DE+DR I+ L E+ R S++EI I + + V+ RV+RL VI F+A +
Sbjct: 2 NSRPASFDELDRKIVTALMENARTSFAEIGAEIGLSSTAVKRRVDRLRETDVITGFSATV 61
Query: 66 NPFKAGYEIVAFIAIDAE-PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQEL 124
P G+ A++ + E A R++ E + PE+ VTG D + V RD++
Sbjct: 62 RPSALGWRTEAYVEVYCEGAAPPRRLAEVVRGYPEITAAMTVTGGADALLHVRARDVEHF 121
Query: 125 ERFILEKMAKIDGIRSTETSILTS 148
E +LE++ IR T + ++ S
Sbjct: 122 EE-VLERIRAEPFIRKTISVMVLS 144
>gb|AAC45745.1| (U42216) orf1; putative regulatory protein of AsnC-Lrp family
[Rhodococcus erythropolis]
Length = 170
Score = 75.7 bits (183), Expect = 3e-13
Identities = 39/136 (28%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ +D++D +L LL +D RMS +E++ + V +TV++R+ R+ G++ F +N +
Sbjct: 2 LSIDKLDVQLLGLLSKDSRMSVAELANSLGVARNTVQSRMKRMESNGLLTGFRPNLNLPE 61
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFIL 129
G I AF+ ++ E K+ V L +LPEV + TG D+ ++V L++ +
Sbjct: 62 VGIPIQAFVGLELEQGKISAVARSLTELPEVIEIHATTGREDLLVRVATSTHAALQK-LA 120
Query: 130 EKMAKIDGIRSTETSI 145
E++ + G+ + T+I
Sbjct: 121 EQIVSLPGVTHSTTTI 136
>emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis]
Length = 164
Score = 75.7 bits (183), Expect = 3e-13
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFISGYTALLNPHYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL E+ +V+G D ++ V D+ + +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNMAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
E + ++ G+ T T ++
Sbjct: 132 GETLLRLPGVNDTRTYVV 149
>sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GDH 3'REGION
Length = 120
Score = 75.3 bits (182), Expect = 3e-13
Identities = 36/101 (35%), Positives = 61/101 (59%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D+ IL +L++D R ++EI++++ + E+ VR RV L +G+I + INP K G
Sbjct: 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDI 112
Y +V +D +P K+ +V E+L + V L + +G H I
Sbjct: 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMI 102
>pir||F75341 transcription regulator, AsnC family - Deinococcus radiodurans
(strain R1) >gi|6459677|gb|AAF11448.1|AE002028_10
(AE002028) transcriptional regulator, AsnC family
[Deinococcus radiodurans]
Length = 195
Score = 75.3 bits (182), Expect = 3e-13
Identities = 41/144 (28%), Positives = 78/144 (53%), Gaps = 3/144 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD DR IL +LQ D R++ +E++ I + + RV RL EGVI ++ AL++P
Sbjct: 43 LDPTDRQILSILQRDARIANTELADEIGLTPAPTLRRVRRLEEEGVIHRYVALLDPKLVN 102
Query: 72 YEIVAFIAIDAEPAK---VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
+++ + + + + E + PEV + G D ++V V +L +RF+
Sbjct: 103 RDLMVMVRVTLDKQTKQGFQDFAEHMRARPEVLECYLCLGDTDYLLKVCVPNLDAYQRFL 162
Query: 129 LEKMAKIDGIRSTETSILTSVKKW 152
++ +A I G+R+T+++I+ +K+
Sbjct: 163 VDVLAAIPGVRNTDSTIVVKQEKY 186
>pir||T36701 probable transcription regulator - Streptomyces coelicolor
>gi|5102784|emb|CAB45199.1| (AL079308) putative
transcriptional regulator [Streptomyces coelicolor
A3(2)]
Length = 135
Score = 73.7 bits (178), Expect = 1e-12
Identities = 39/125 (31%), Positives = 67/125 (53%)
Query: 22 LLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAGYEIVAFIAID 81
+LQ DGR S ++ R++V + AR+NRL+ +GVIR F A ++ +AG+ A+I +
Sbjct: 1 MLQADGRASIRSVAERVHVSRANAYARINRLVEDGVIRGFGARVDHERAGHGTSAYITLK 60
Query: 82 AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEKMAKIDGIRST 141
R V +L +LP + +V G D+ + V D + L +L ++ I + ST
Sbjct: 61 IVQNSWRTVRAQLRQLPGASHIALVGGDFDVLLLVHTPDNRALRELVLSRLQAIPEVLST 120
Query: 142 ETSIL 146
T ++
Sbjct: 121 RTLLV 125
>pir||B82142 leucine-responsive regulatory protein VC1904 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656438|gb|AAF95052.1| (AE004266) leucine-responsive
regulatory protein [Vibrio cholerae]
Length = 164
Score = 73.7 bits (178), Expect = 1e-12
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD IDR IL LQ+DGR+S E+S+R+ + + RV RL R+G I + AL+NP
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71
Query: 72 YEIVAFIAID---AEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
++ F+ I P Q + KL ++ +V+G D ++ V D+ R +
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131
Query: 129 LEKMAKIDGIRSTETSIL 146
+ + ++ G+ T T ++
Sbjct: 132 GDTLLRLPGVNDTRTYVV 149
>pir||F83046 probable transcription regulator PA4784 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951050|gb|AAG08170.1|AE004892_1 (AE004892) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 155
Score = 73.7 bits (178), Expect = 1e-12
Identities = 43/136 (31%), Positives = 78/136 (56%), Gaps = 2/136 (1%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+D+ DRA+L L ++GR++++E++RRIN+ V RV +L EGVI + A +N K G
Sbjct: 1 MDKYDRALLAALIDNGRLTFAELARRINLSPPAVADRVAKLEAEGVITGYHASVNLAKLG 60
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
I I + + V++ELA++P++ + +TG + M+ V + EL+ ++++
Sbjct: 61 LPIECVIELRITEKDCQSVLDELARIPQLTLCHRITGDACVLMKAAVASMPELQD-LIDR 119
Query: 132 MAKIDGIRSTETSILT 147
+ K GI T + T
Sbjct: 120 LMKF-GISKTSMILST 134
>emb|CAC11402.1| (AL445063) leucine-responsive-regulatory protein related protein
[Thermoplasma acidophilum]
Length = 177
Score = 73.4 bits (177), Expect = 1e-12
Identities = 41/136 (30%), Positives = 79/136 (57%), Gaps = 1/136 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE+D+ I+ L+ + R+S +EI++ +N E+TVR R+N L+R+ +I F+AL++
Sbjct: 32 VDELDKQIICFLRYNARISNAEIAKALNTSEATVRRRINELVRKKIIIGFSALVDLQAVE 91
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
I A+I ID +P K+ V + V L G + + + +L+ +E F +
Sbjct: 92 NSIKAYIIIDVDPNKMDDVANSITDNINVLSLYRRRGKNQLIAETLFLNLEAIENF-ESQ 150
Query: 132 MAKIDGIRSTETSILT 147
++K+ G+++ ET I++
Sbjct: 151 ISKMSGVKNFETMIIS 166
>gb|AAK42310.1| Transcriptional regulator homolog (Lrp/AsnC family) [Sulfolobus
solfataricus]
Length = 155
Score = 73.0 bits (176), Expect = 2e-12
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
++LD+ D IL +L+ + + S E+S + +P STVR R+ RL +IR + ALI+
Sbjct: 7 IRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVN 66
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPE-VDVLGIVTGAHDIFMQVTVRDLQELERFI 128
G + + I+ P +++V ++L ++PE V + G+ G + + + +D +FI
Sbjct: 67 LGLNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPR-LHVHMIFKDDASAHQFI 125
Query: 129 LEKMAKIDGIRSTETS 144
K+ I GI++ S
Sbjct: 126 ANKLYNIKGIKTVSIS 141
>pir||S74043 transcription regulator homolog c0107 - Sulfolobus solfataricus
>gi|1707737|emb|CAA69457.1| (Y08256) orf c01007
[Sulfolobus solfataricus]
Length = 155
Score = 73.0 bits (176), Expect = 2e-12
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
++LD+ D IL +L+ + + S E+S + +P STVR R+ RL +IR + ALI+
Sbjct: 7 IRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVN 66
Query: 70 AGYEIVAFIAIDAEPAKVRQVVEELAKLPE-VDVLGIVTGAHDIFMQVTVRDLQELERFI 128
G + + I+ P +++V ++L ++PE V + G+ G + + + +D +FI
Sbjct: 67 LGLNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPR-LHVHMIFKDDASAHQFI 125
Query: 129 LEKMAKIDGIRSTETS 144
K+ I GI++ S
Sbjct: 126 ANKLYNIKGIKTVSIS 141
>pir||H81182 transcription regulator, AsnC family NMB0573 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225801|gb|AAF41001.1| (AE002413) transcriptional
regulator, AsnC family [Neisseria meningitidis MC58]
Length = 187
Score = 73.0 bits (176), Expect = 2e-12
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 3 RVAHSRKVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFA 62
R A+ ++ LD+ D IL++LQE+GR++ E+S R+ + S R+ +L G++R++A
Sbjct: 24 RNANMPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYA 83
Query: 63 ALINPFKAGYEIVAFIAIDAEPAK--VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRD 120
AL++P + AFI + AK + K PEV +TG D +Q D
Sbjct: 84 ALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTD 143
Query: 121 LQELERFILEKMAKIDGIRSTETS-ILTSVK 150
+ F+L+ + G++ ++S +L +K
Sbjct: 144 MNAFSHFVLDTLLSHHGVQDAQSSFVLKEIK 174
>emb|CAC11747.1| (AL445064) transcription regulator related protein [Thermoplasma
acidophilum]
Length = 143
Score = 73.0 bits (176), Expect = 2e-12
Identities = 40/143 (27%), Positives = 79/143 (54%), Gaps = 4/143 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D IL L E+ R S++SR +++P T+ R+ +I+ G+I+KF + + G
Sbjct: 1 MDEKDIQILNYLMENARDKISDMSRVLDIPRVTIYERMQNMIKSGIIKKFTIVPDYKALG 60
Query: 72 YEIVAFIAIDAEP---AKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
+VAFI I P R++ ++A +V+ + I+ G D+ ++V + + F+
Sbjct: 61 VPVVAFILIAYTPKDGLSQRELAAKIANFKDVENVYIIAGEWDLLIKVRESSTEAVGNFV 120
Query: 129 LEKMAKIDGIRSTET-SILTSVK 150
L+K+ ++ G+ +T ++ + VK
Sbjct: 121 LDKLREMPGVERAQTITVFSEVK 143
>pir||E81919 probable AsnC-family transcription regulator NMA0756 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379477|emb|CAB84039.1| (AL162754) putative
AsnC-family transcriptional regulator [Neisseria
meningitidis Z2491]
Length = 160
Score = 71.8 bits (173), Expect = 4e-12
Identities = 42/146 (28%), Positives = 77/146 (51%), Gaps = 3/146 (2%)
Query: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
++ LD+ D IL++LQE+GR++ E+S R+ + S R+ +L G++R++AAL++P
Sbjct: 3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 62
Query: 69 KAGYEIVAFIAIDAEPAK--VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
+ AFI + AK + K PEV +TG D +Q D+
Sbjct: 63 SVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 122
Query: 127 FILEKMAKIDGIRSTETS-ILTSVKK 151
F+L+ + G++ ++S +L +K+
Sbjct: 123 FVLDTLLSHHGVQDAQSSFVLKEIKQ 148
>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
Length = 142
Score = 71.4 bits (172), Expect = 5e-12
Identities = 39/136 (28%), Positives = 81/136 (58%), Gaps = 5/136 (3%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+DE D IL +L+++ R Y+ I++ + V E+ +R R+ +LIR+G+I++F ++
Sbjct: 6 IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTI---EYELE 62
Query: 72 YEIVAFIAIDAEP-AKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
EI A + + + P ++ +++AK+P V+V+ TG +DI + V ++ + R I +
Sbjct: 63 NEIRAIVMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTI-D 121
Query: 131 KMAKIDGIRSTETSIL 146
++ I G+ T ++I+
Sbjct: 122 EIRSIQGVVGTNSTII 137
>pir||D70981 hypothetical protein Rv3291c - Mycobacterium tuberculosis (strain
H37RV) >gi|1877346|emb|CAB07073.1| (Z92771) hypothetical
protein Rv3291c [Mycobacterium tuberculosis]
Length = 150
Score = 71.4 bits (172), Expect = 5e-12
Identities = 45/138 (32%), Positives = 75/138 (53%), Gaps = 2/138 (1%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD+IDR ++R L DGR + SE++ R + S V++RV RL GV++ ++A INP G
Sbjct: 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVG 64
Query: 72 YEIVAFIAI-DAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILE 130
+ + AF+AI +P++ L + EV+ V G + V V + LE +L+
Sbjct: 65 HLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALED-LLQ 123
Query: 131 KMAKIDGIRSTETSILTS 148
++ +R+ T IL +
Sbjct: 124 RIRTTANVRTRSTIILNT 141
>gb|AAF71783.1|AF263912_22 (AF263912) ORF2 [Streptomyces noursei]
Length = 354
Score = 71.4 bits (172), Expect = 5e-12
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA- 70
LD +D+A++ LQ R S++ I + + TV R NRL+ G AA I+ A
Sbjct: 12 LDHVDQALVHALQITPRASWTRIGSVLGLDAVTVARRWNRLVETG-----AAWISCHPAP 66
Query: 71 -----GYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELE 125
G +AF+ ID P ++ V LA P V L VTG D+ + V RD L
Sbjct: 67 VLAASGQGCLAFVEIDCAPGRLLDVARALAAAPHVVALSHVTGDRDLQLNVMARDPAMLS 126
Query: 126 RFILEKMAKIDGIRSTETSILTSVKKWG 153
R++ +A +DG+R+ T + V G
Sbjct: 127 RWVTHDLAALDGVRAARTHLAGPVHTEG 154
>pir||H83082 probable transcription regulator PA4508 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950748|gb|AAG07896.1|AE004864_8 (AE004864) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 157
Score = 71.4 bits (172), Expect = 5e-12
Identities = 44/145 (30%), Positives = 70/145 (47%), Gaps = 3/145 (2%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
++LD D IL LQ DGR+S +++ I + S RV L GVIR + A I+ +
Sbjct: 1 MKLDAYDHRILAALQRDGRLSNVQLAEEIGLSPSPCLRRVRLLEEAGVIRGYQASIDRDE 60
Query: 70 AGYEIVAFIAIDAEPAKVRQVV---EELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
G + F+ I E + Q + LPEV + +V+G D +QV V DL+ ER
Sbjct: 61 VGLGLTVFVGIKVERHRQEQAEAFHRAVVDLPEVISVHLVSGESDFLLQVVVPDLRAYER 120
Query: 127 FILEKMAKIDGIRSTETSILTSVKK 151
+ E + ++ G+ ++ K
Sbjct: 121 LLSETLLRLPGVSDIRSNFAIKTVK 145
>pir||F83150 probable transcription regulator PA3965 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950154|gb|AAG07352.1|AE004814_7 (AE004814) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 169
Score = 70.6 bits (170), Expect = 9e-12
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
+LD D IL LQ D R+S E++ RI + S RV +L +G I + AL++ K
Sbjct: 13 KLDRYDLRILEELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYIVRQVALLDRKKL 72
Query: 71 GYEIVAFIAIDAE---PAKVRQVVEELAKLPEVDVLGIVTGAH-DIFMQVTVRDLQELER 126
G + AF+ I + P + E + K PEV +VTG D ++V V D+ ++
Sbjct: 73 GLSLTAFVLIGMDRHTPERFEHFQEVIGKCPEVLECSLVTGMDADYQLKVVVPDMDHYQK 132
Query: 127 FILEKMAKIDGIRSTETSIL 146
+L + +I+G+ S +S +
Sbjct: 133 LLLGTLTRIEGVSSVRSSFV 152
>sp|P42179|BKDR_PSEPU BKD OPERON TRANSCRIPTIONAL REGULATOR >gi|790513|gb|AAA65613.1|
(M57613) BkdR [Pseudomonas putida]
Length = 161
Score = 69.5 bits (167), Expect = 2e-11
Identities = 42/137 (30%), Positives = 76/137 (54%), Gaps = 4/137 (2%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
+LD D IL LQE+ R++ +E++R +N+ + RV + GVIR+ L++P
Sbjct: 3 KLDRTDIGILNSLQENARITNAELARSVNLSPTPCFNRVRAMEELGVIRQQVTLLSPEAL 62
Query: 71 GYEIVAFIAIDAE---PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERF 127
G ++ FI + E + + EE+A+ PEV ++TG D ++V + +Q LERF
Sbjct: 63 GLDVNVFIHVSLEKQVEQSLHRFEEEIAERPEVMECYLMTGDPDYLLRVLLPSIQALERF 122
Query: 128 ILEKMAKIDGIRSTETS 144
L+ + ++ G+ + +S
Sbjct: 123 -LDYLTRLPGVANIRSS 138
>pir||H71093 hypothetical protein PH1013 - Pyrococcus horikoshii
>gi|3257427|dbj|BAA30110.1| (AP000004) 162aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 162
Score = 69.5 bits (167), Expect = 2e-11
Identities = 45/147 (30%), Positives = 78/147 (52%), Gaps = 8/147 (5%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALI-NPFKA 70
LD++DRAIL+LL++D R++ +EIS ++ PESTV R+ +L GVI K+ ++ P +
Sbjct: 6 LDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGVIEKYTIILGEPIRP 65
Query: 71 GYEIVAFIAIDAEPAK------VRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQEL 124
+ + +D + + V + L+ PEV + +G I V D +L
Sbjct: 66 RELALVVLEVDKPIIEDFLDRYMEYVTKTLSGFPEV-LFVAKSGKEKIVALVGGEDRDKL 124
Query: 125 ERFILEKMAKIDGIRSTETSILTSVKK 151
+FI E + I +RS + ++ +KK
Sbjct: 125 LKFIEENIESIPTLRSVQVLPISEIKK 151
>pir||D83384 probable transcription regulator PA2082 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948094|gb|AAG05470.1|AE004636_1 (AE004636) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 158
Score = 69.5 bits (167), Expect = 2e-11
Identities = 45/152 (29%), Positives = 78/152 (50%), Gaps = 13/152 (8%)
Query: 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
+ LD ID ILR LQ+DGRMS +++ ++++ S R+ L EG+IR ++ ++ +
Sbjct: 1 MSLDAIDLRILRHLQQDGRMSNQDLAEKVSLSPSACLRRLRLLESEGIIRGYSVELDAER 60
Query: 70 AGYEIVAFIAIDAEPAKVRQVVE--------ELAKLPEVDVLGIVTGAHDIFMQVTVRDL 121
G E+ A + + +RQ VE + PEV +VTGA + ++V R+L
Sbjct: 61 LGVELEAIVHV-----SLRQDVEGWHEAFIARVRDWPEVVTAYVVTGATNYVLRVRARNL 115
Query: 122 QELERFILEKMAKIDGIRSTETSILTSVKKWG 153
+ FI+ K+ + G+ + I+ K G
Sbjct: 116 KHYSDFIVNKLNRAAGVTDIRSEIVLQEIKAG 147
>pir||A75193 probable transcription regulator PAB2299 - Pyrococcus abyssi
(strain Orsay) >gi|5457501|emb|CAB48992.1| (AJ248283)
hypothetical TRANSCRIPTIONAL REGULATOR [Pyrococcus
abyssi]
Length = 148
Score = 69.1 bits (166), Expect = 3e-11
Identities = 37/144 (25%), Positives = 84/144 (57%), Gaps = 3/144 (2%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
+LD++D ++++L ++ R++Y E++ +N + R+ +L + GVI+KF + + K
Sbjct: 3 KLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKL 62
Query: 71 GYEIVAFIAIDAE-PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTV-RDLQELERFI 128
GY + AF+ + P++V ++ E++ + V + G +++ +++ + +DL+E E I
Sbjct: 63 GY-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGII 121
Query: 129 LEKMAKIDGIRSTETSILTSVKKW 152
E + KI S E +++ +KK+
Sbjct: 122 NEFLQKIKNAESVEVVLISEIKKF 145
>dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [Pseudomonas putida]
Length = 159
Score = 67.9 bits (163), Expect = 6e-11
Identities = 35/136 (25%), Positives = 74/136 (53%), Gaps = 3/136 (2%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
+D DRA+L LQ++ R++ +E++ + + S RV L G I + A+++P G
Sbjct: 5 IDRTDRALLAALQDNARLTVAELADSVALTTSPCWRRVKLLEESGYITGYQAILSPKALG 64
Query: 72 YEIVAFIAI--DAEPAKVRQVVEE-LAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
+ + AF++I D+ ++ + E+ L +PE+ ++G +D +++ RDL+ F
Sbjct: 65 FGVTAFVSIMMDSHSKEMARAFEQRLMDIPEIVACHNISGRYDFLLEILARDLESFGEFT 124
Query: 129 LEKMAKIDGIRSTETS 144
E + ++ G++ +S
Sbjct: 125 REVLQRLPGVKEIYSS 140
>pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii
>gi|3256446|dbj|BAA29129.1| (AP000001) 151aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 151
Score = 67.5 bits (162), Expect = 7e-11
Identities = 33/143 (23%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
+LD +D ++++L E+ R++Y E++ +N + R+++L + G+IRKF + + K
Sbjct: 6 KLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKL 65
Query: 71 GYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTV-RDLQELERFIL 129
GY + P+ +V+ E++ + V + G ++I +++ + +D+++ E I
Sbjct: 66 GYMYAIVLIKSKVPSDADKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAENLIS 125
Query: 130 EKMAKIDGIRSTETSILTSVKKW 152
E + +I + E +++ V+K+
Sbjct: 126 EFLQRIKNAENVEVILISEVRKF 148
>pir||T35606 probable Asn-C family transcription regulator - Streptomyces
coelicolor >gi|5139583|emb|CAB45601.1| (AL079356)
putative Asn-C family transcriptional regulator
[Streptomyces coelicolor]
Length = 164
Score = 67.5 bits (162), Expect = 7e-11
Identities = 37/137 (27%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
LD++D +LRLL+E R EI+RR+ V T++AR++RL GV+ + ++ G
Sbjct: 6 LDQLDGRMLRLLRERPREGLLEIARRLGVARGTLQARLDRLTGSGVVTGYGPDMDVAALG 65
Query: 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
+ + AF + + + L +P++ +VTG DI+ ++ Q ++ ++++
Sbjct: 66 HVVQAFTTFEVDQPAREAIAARLRAVPQILEAHVVTGPGDIWCRIAGTSNQHVQE-VIDQ 124
Query: 132 MAKIDGIRSTETSILTS 148
+ ++ G+R + T I S
Sbjct: 125 VLEVPGVRRSTTVIALS 141
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.139 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47119388
Number of Sequences: 2977
Number of extensions: 1602955
Number of successful extensions: 6870
Number of sequences better than 1.0e-10: 70
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 6811
Number of HSP's gapped (non-prelim): 71
length of query: 158
length of database: 189,106,746
effective HSP length: 57
effective length of query: 101
effective length of database: 154,992,987
effective search space: 15654291687
effective search space used: 15654291687
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 161 (67.1 bits)