BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2261 (PAB2261) DE:Hypothetical protein
(248 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75200 hypothetical protein PAB2261 - Pyrococcus abyssi (st... 476 e-134
pir||A71234 hypothetical protein PH0131 - Pyrococcus horikoshii ... 404 e-112
pir||F69742 hypothetical protein ybaF - Bacillus subtilis >gi|26... 115 7e-25
pir||T44414 hypothetical protein ybaF [imported] - Bacillus halo... 108 5e-23
pir||E72202 conserved hypothetical protein - Thermotoga maritima... 101 7e-21
sp|Q50292|Y181_MYCPN HYPOTHETICAL PROTEIN MG181 HOMOLOG (GT9_ORF... 89 4e-17
sp|P47427|Y181_MYCGE HYPOTHETICAL PROTEIN MG181 >gi|1361629|pir|... 89 7e-17
gb|AAK42083.1| Conserved hypothetical protein [Sulfolobus solfat... 85 6e-16
gb|AAK42218.1| Conserved hypothetical protein [Sulfolobus solfat... 81 1e-14
pir||C82879 conserved hypothetical UU537 [imported] - Ureaplasma... 74 2e-12
pir||A75270 conserved hypothetical protein - Deinococcus radiodu... 73 3e-12
>pir||F75200 hypothetical protein PAB2261 - Pyrococcus abyssi (strain Orsay)
>gi|5457562|emb|CAB49053.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 476 bits (1213), Expect = e-134
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDV 60
MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDV
Sbjct: 1 MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDV 60
Query: 61 KVQLKALKPLIPIFILTFISWPIVAKPLERGILLGIAYTFRIMGITLMAFGLMMTTRQRD 120
KVQLKALKPLIPIFILTFISWPIVAKPLERGILLGIAYTFRIMGITLMAFGLMMTTRQRD
Sbjct: 61 KVQLKALKPLIPIFILTFISWPIVAKPLERGILLGIAYTFRIMGITLMAFGLMMTTRQRD 120
Query: 121 LIRGFTKLGLPYEIGLTVLIALRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIA 180
LIRGFTKLGLPYEIGLTVLIALRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIA
Sbjct: 121 LIRGFTKLGLPYEIGLTVLIALRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIA 180
Query: 181 IVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDYVALAVVFTIALLYLSL 240
IVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDYVALAVVFTIALLYLSL
Sbjct: 181 IVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDYVALAVVFTIALLYLSL 240
Query: 241 KFSLLPRL 248
KFSLLPRL
Sbjct: 241 KFSLLPRL 248
>pir||A71234 hypothetical protein PH0131 - Pyrococcus horikoshii
>gi|3256517|dbj|BAA29200.1| (AP000001) 249aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 249
Score = 404 bits (1027), Expect = e-112
Identities = 192/248 (77%), Positives = 229/248 (91%)
Query: 1 MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDV 60
MMYSLYVE++SLLH+LDPRVKIIG VFGTIG++ +DP+ SP+IF LTLLG K+LGK+D
Sbjct: 1 MMYSLYVEKRSLLHALDPRVKIIGTLVFGTIGLMIKDPVISPLIFFLTLLGFKILGKIDF 60
Query: 61 KVQLKALKPLIPIFILTFISWPIVAKPLERGILLGIAYTFRIMGITLMAFGLMMTTRQRD 120
+ Q K +KPLIPIFILTFISWPI+ KP+E+G+L+GIAYTFRIMGITL+AFGLMMTT+QR+
Sbjct: 61 RTQFKVMKPLIPIFILTFISWPIIVKPVEKGVLIGIAYTFRIMGITLIAFGLMMTTKQRE 120
Query: 121 LIRGFTKLGLPYEIGLTVLIALRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIA 180
LIRGFTKLGLPYEIGLTVLIALRY+PTL++LA NIMDAQ+SRGLELEKGNF+ERSRKM+A
Sbjct: 121 LIRGFTKLGLPYEIGLTVLIALRYIPTLYSLAKNIMDAQRSRGLELEKGNFIERSRKMVA 180
Query: 181 IVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDYVALAVVFTIALLYLSL 240
IVIPLLV+SI+TAHELA+AMESRAFGASK+RTHL +LKM++ DY+AL V+ +ALLYL +
Sbjct: 181 IVIPLLVISIKTAHELAIAMESRAFGASKKRTHLVDLKMRKSDYIALTVIVIVALLYLGI 240
Query: 241 KFSLLPRL 248
KFSLLP L
Sbjct: 241 KFSLLPHL 248
>pir||F69742 hypothetical protein ybaF - Bacillus subtilis
>gi|2632414|emb|CAB11923.1| (Z99104) ybaF [Bacillus
subtilis]
Length = 265
Score = 115 bits (284), Expect = 7e-25
Identities = 80/261 (30%), Positives = 134/261 (50%), Gaps = 21/261 (8%)
Query: 1 MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDV 60
M+ YV SL+H LDPR K+I I +F I L + + + + L +G+ L ++
Sbjct: 5 MIIGKYVPGTSLVHRLDPRTKLITIFLFVCIVFLANN-VQTYALLGLFTIGVVSLTRVPF 63
Query: 61 KVQLKALKPLIPIFILTFI-------SWPIV-----AKPLERGILLGIAYTFRIMGITLM 108
+K LKP+I I + TF+ PI+ ++ E G++ GI + R + + L+
Sbjct: 64 SFLMKGLKPIIWIVLFTFLLHILMTHEGPIIFQIGFSRVYEGGLVQGIFISLRFVYLILI 123
Query: 109 AFGLMMTTR-------QRDLIRGFTKLGLP-YEIGLTVLIALRYVPTLHALANNIMDAQK 160
L +TT L+ KL LP +E+ L + I+LR++PTL + IM AQ
Sbjct: 124 TTLLTLTTTPIEITDGMEQLLNPLKKLKLPVHELALMMSISLRFIPTLMEETDKIMKAQM 183
Query: 161 SRGLELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMK 220
+RG++ G ER + ++ +++PL V + + A ELA+AME+R + + RT +L
Sbjct: 184 ARGVDFTSGPVKERVKAIVPLLVPLFVSAFKRAEELAVAMEARGYQGGEGRTKYRKLVWT 243
Query: 221 RKDYVALAVVFTIALLYLSLK 241
KD + + +A L SL+
Sbjct: 244 GKDTSVIVSLIVLAALLFSLR 264
>pir||T44414 hypothetical protein ybaF [imported] - Bacillus halodurans
>gi|4512435|dbj|BAA75302.1| (AB017508) ybaF homologue
(identity of 59% to B. subtilis ) [Bacillus halodurans]
>gi|10172778|dbj|BAB03885.1| (AP001507) unknown
conserved protein [Bacillus halodurans]
Length = 265
Score = 108 bits (268), Expect = 5e-23
Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 23/255 (9%)
Query: 6 YVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDVKVQLK 65
YV S+LH LDPR K++ + + D I+ V+ TL + LL ++ + +
Sbjct: 10 YVPGNSVLHRLDPRAKLVAVFLLVLFVFFANDWISYGVLVTFTLTVI-LLSRVPLSFIYR 68
Query: 66 ALKPLIPIFILTFISWPIVAKP------------LERGILLGIAYTFRIMGITLMAFGLM 113
L+P++ + +LT + ++ K E+GI+ G+ + R++ + ++ L
Sbjct: 69 GLRPILWLVLLTVLLHLLMTKEGAVVFTIGGFTVHEQGIINGVFLSIRLLTLVILTSLLT 128
Query: 114 MTTRQ-------RDLIRGFTKLGLP-YEIGLTVLIALRYVPTLHALANNIMDAQKSRGLE 165
+TT L+ ++G+P +EI L + IALR++PT IM AQ +RG++
Sbjct: 129 LTTTPIQVTDGLETLLSPLKRIGVPAHEIALMISIALRFIPTFMQETEKIMKAQMARGVD 188
Query: 166 LEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDYV 225
L G ER ++ ++IPL + + + A +LA+AME+R + + RT L L K +D
Sbjct: 189 LTTGPIKERLNALLPLLIPLFMSAFKRAEDLALAMEARGYRGGEGRTKLRALTWKSRDTW 248
Query: 226 ALAVV--FTIALLYL 238
L VV F + L L
Sbjct: 249 LLIVVCAFGVGLFLL 263
>pir||E72202 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982453|gb|AAD36930.1|AE001823_12 (AE001823)
conserved hypothetical protein [Thermotoga maritima]
Length = 271
Score = 101 bits (250), Expect = 7e-21
Identities = 78/256 (30%), Positives = 126/256 (48%), Gaps = 30/256 (11%)
Query: 6 YVERKSLLHSLDPRVKIIGIAVFGTIGMLTRDPIASPVIFVLTLLGLKLLGKLDVKVQLK 65
Y+ S++H LDPR K++G+ +F +L + ++ L + L L + K+ L
Sbjct: 11 YIPVDSIVHRLDPRAKLLGM-IFLISAVLIVPNLLFYLVPGLAIFLLMFLSRTGFKIYLA 69
Query: 66 ALKPLIPIFILTF--------------ISWPIVAKPLERGILLGIAYTFRIMGITLMAFG 111
L+ L F L F I W I +R I + R++ I L+A
Sbjct: 70 GLRSLW--FFLVFAVLVQFFSSSEGEKIFWMIT----DRAIWSAVYIMLRLVLIILLAEN 123
Query: 112 LMMTT----RQRDLIRGFTKLG---LPYEIGLTVLIALRYVPTLHALANNIMDAQKSRGL 164
TT R + F+ G + +EIG+ + IA+R+VP L A+ I+ AQ +RG
Sbjct: 124 FSATTPPLLSARAIESIFSTFGARKIGHEIGMVMTIAMRFVPVLALEADRILKAQIARGA 183
Query: 165 ELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKDY 224
E+G F +R R ++ I++PLL+ ++R A ELA+AME+R + +T ++K K D
Sbjct: 184 NFERGKFFDRIRALVVIIVPLLISALRKAEELAVAMEARLYTGEPPKTRFKDIKWKPMD- 242
Query: 225 VALAVVFTIALLYLSL 240
L V+ T +L L L
Sbjct: 243 -TLYVLLTAGVLVLVL 257
>sp|Q50292|Y181_MYCPN HYPOTHETICAL PROTEIN MG181 HOMOLOG (GT9_ORF434)
>gi|2127632|pir||S62813 MG181 homolog GT9_orf434 -
Mycoplasma pneumoniae (strain ATCC 29342)
>gi|2146377|pir||S73962 MG181 homolog GT9_orf434 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1215693|gb|AAC43686.1| (U34795) putative orf;
GT9_orf434 [Mycoplasma pneumoniae]
>gi|1674341|gb|AAB96284.1| (AE000061) similar to cobalt
transport membrane protein [Mycoplasma pneumoniae]
Length = 434
Score = 89.3 bits (218), Expect = 4e-17
Identities = 50/162 (30%), Positives = 94/162 (57%), Gaps = 10/162 (6%)
Query: 90 RGILLGIAYTFRIMGITLMAFGLMMTTRQRDLIRGFTKLGLPYEI--------GLTVLIA 141
R I+L T +I+ + ++A L T+ +L G +L P ++ +T+ IA
Sbjct: 242 RAIILAFYVTQKILIMIILATVLTSTSSSVELAYGIERLLWPLKLLRVPVNVFAMTIAIA 301
Query: 142 LRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAME 201
+R+VP+L + I++AQ SRGL+ + GNF + R + ++V+P++ ++ R A ELA AME
Sbjct: 302 IRFVPSLLLESQRILNAQASRGLDFKNGNFFVKMRSLSSLVVPMISIAFRNAGELASAME 361
Query: 202 SRAFGASKRRTHLTELKMKRKDYVA--LAVVFTIALLYLSLK 241
+R + +K+RT + K+ D A L ++ + +++L++K
Sbjct: 362 ARGYDPTKKRTTYRKFKIDWVDATALILTALYFVVIIFLTVK 403
>sp|P47427|Y181_MYCGE HYPOTHETICAL PROTEIN MG181 >gi|1361629|pir||A64220 hypothetical
protein MG181 - Mycoplasma genitalium
>gi|3844777|gb|AAC71400.1| (U39697) conserved
hypothetical protein [Mycoplasma genitalium]
Length = 420
Score = 88.5 bits (216), Expect = 7e-17
Identities = 50/162 (30%), Positives = 94/162 (57%), Gaps = 10/162 (6%)
Query: 90 RGILLGIAYTFRIMGITLMAFGLMMTTRQRDLIRGFTKLGLPYEI--------GLTVLIA 141
R ++L T +I+ + L A L T+ +L G +L P ++ +T+ IA
Sbjct: 229 RAVILAFYVTQKILIMILFATVLTSTSSSVELAYGIERLLWPLKLIKIPVNVFAMTIAIA 288
Query: 142 LRYVPTLHALANNIMDAQKSRGLELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAME 201
+R+VP+L + I++AQ SRGL+ G FL + R + ++V+P++ ++ R A ELA AME
Sbjct: 289 IRFVPSLLLESQRILNAQASRGLDFRNGGFLVKMRSLSSLVVPMVSIAFRNASELASAME 348
Query: 202 SRAFGASKRRTHLTELKMKRKDYVALAVVFT--IALLYLSLK 241
+R + +K+R+ + K+ D +AL +VF + +++L+++
Sbjct: 349 ARGYHPAKKRSSYRQYKITWIDILALFLVFAWFVVIIFLTIR 390
>gb|AAK42083.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 321
Score = 85.4 bits (208), Expect = 6e-16
Identities = 53/159 (33%), Positives = 86/159 (53%), Gaps = 5/159 (3%)
Query: 90 RGILLGIAYTFRIMGITLMAFGLMMTTRQRDLIRGFTKLGLPYEIGLTVLIALRYVPTLH 149
+ ++ G+ +FRI + L A L+ TT D+ R FTK+ +P I +VL+ +R +P +
Sbjct: 154 QALIYGLQTSFRIAPVLLSALLLITTTTGSDIFRMFTKIKIPIAITFSVLVGIRMIPRIF 213
Query: 150 ALANNIMDAQKSRGLELEKGNFLERSRKMIAI---VIPLLVLSIRTAHELAMAMESRAFG 206
L + + Q RGL K + + AI +IP +V R A LA++ ++R F
Sbjct: 214 ELLDTSVKMQYMRGLGYGKPKLISSLLIVYAIFEAIIPTMVYLFRGAKNLAISADTRGFR 273
Query: 207 ASKRRTHLTELKMKRKDYVALAVVFTIALLYLSLKFSLL 245
A RT L ELK R DY +A++ IAL+ +++ +LL
Sbjct: 274 AYPSRTSLVELKFTRVDYYGVAII--IALIVMAILANLL 310
>gb|AAK42218.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 321
Score = 80.8 bits (196), Expect = 1e-14
Identities = 50/157 (31%), Positives = 82/157 (51%), Gaps = 5/157 (3%)
Query: 92 ILLGIAYTFRIMGITLMAFGLMMTTRQRDLIRGFTKLGLPYEIGLTVLIALRYVPTLHAL 151
++ G+ TFR+ + L A + TT D+ R FTK+ +P I +VL+ +R +P + L
Sbjct: 156 LIYGLQTTFRVAPVLLSALLFITTTTGSDIFRMFTKIKIPIAITFSVLVGIRMIPRIFEL 215
Query: 152 ANNIMDAQKSRGLELEKGNFLERSRKMIAI---VIPLLVLSIRTAHELAMAMESRAFGAS 208
+ + Q RGL + + + AI +IP +V R A LA++ ++R F A
Sbjct: 216 LDTSVKMQYIRGLGYSRPKIVSSLLIVYAIFEAIIPTMVYLFRGAKNLAISADTRGFRAY 275
Query: 209 KRRTHLTELKMKRKDYVALAVVFTIALLYLSLKFSLL 245
RT L ELK R DY A++ AL+ +++ +LL
Sbjct: 276 PSRTSLVELKFTRVDYYGTAII--AALIIIAIVANLL 310
>pir||C82879 conserved hypothetical UU537 [imported] - Ureaplasma urealyticum
>gi|6899541|gb|AAF30950.1|AE002152_9 (AE002152)
conserved hypothetical [Ureaplasma urealyticum]
Length = 438
Score = 73.7 bits (178), Expect = 2e-12
Identities = 42/146 (28%), Positives = 76/146 (51%), Gaps = 4/146 (2%)
Query: 105 ITLMAFGLMMTTRQRDLIRGFTKLGLPY-EIGLTVLIALRYVPTLHALANNIMDAQKSRG 163
+T + +T DL+ F L LP E + + IALR++P+L + I++AQ SRG
Sbjct: 281 LTATTSSIELTNGLEDLLSPFKILRLPVAEASMMISIALRFIPSLLDESKRILNAQASRG 340
Query: 164 LELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAMESRAFGASKRRTHLTELKMKRKD 223
++ G +++ + +I++V+PL ++ + A +LA AME+R++ RT + D
Sbjct: 341 VDFNNGGPIQKLKSLISLVVPLFSIAFKKAEDLANAMEARSYNPRYARTRYRTFPLNLAD 400
Query: 224 YVALAVVFTIALLYLSL---KFSLLP 246
Y ++ + +SL KF P
Sbjct: 401 YALFGILCILVGFLISLAVIKFYFTP 426
>pir||A75270 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460288|gb|AAF12011.1|AE002076_3 (AE002076)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 198
Score = 73.0 bits (176), Expect = 3e-12
Identities = 53/223 (23%), Positives = 103/223 (45%), Gaps = 44/223 (19%)
Query: 1 MMYSLYVERKSLLHSLDPRVKIIGIAVFGTIGMLTRD--PIASPVIFVLTLLGLKLLGKL 58
M LYV R S LH P VK++G+ + G + + D P+ + + L L + LG
Sbjct: 1 MTLGLYVPRDSPLHRAAPGVKLLGLLLCGVLVFMLHDWRPLLALLGLTLALYAVARLGWR 60
Query: 59 DVKVQLKALKPLIPIFILTFISWPIVAKPLERGILLGIAYTFRIMGITLMAFGLM----- 113
QL+ L+ F+ ++ G+ + +T + FG+M
Sbjct: 61 TTWAQLRPALGLLLFFL----------------VVQGLLTNWETAVVTALRFGVMILLAS 104
Query: 114 ---MTTRQRDLIRGFTKLGLPY--------EIGLTVLIALRYVPTLHALANNIMDAQKSR 162
+TTR L+ G + LP + L V + LR++P + ++ +AQ++R
Sbjct: 105 LVTLTTRTSALLAGLERAALPLARLGVNPARVSLAVSLTLRFIPVVAQTVQDVREAQRAR 164
Query: 163 GLELEKGNFLERSRKMIAIVIPLLVLSIRTAHELAMAMESRAF 205
G+E + M+A+ +P++V +++ A ++A A+++R++
Sbjct: 165 GIE----------KNMLALAVPVIVRTLKMADDVADAIDARSW 197
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.145 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77751011
Number of Sequences: 2977
Number of extensions: 2915803
Number of successful extensions: 8747
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8729
Number of HSP's gapped (non-prelim): 13
length of query: 248
length of database: 189,106,746
effective HSP length: 54
effective length of query: 194
effective length of database: 156,788,448
effective search space: 30416958912
effective search space used: 30416958912
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)