BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2263 (PAB2263) DE:Hypothetical protein
(251 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75200 hypothetical protein PAB2263 - Pyrococcus abyssi (st... 503 e-142
pir||F71233 hypothetical protein PH0128 - Pyrococcus horikoshii ... 443 e-123
sp|Q57678|Y225_METJA HYPOTHETICAL PROTEIN MJ0225 >gi|2127999|pir... 269 2e-71
pir||G69109 conserved hypothetical protein MTH1816 - Methanobact... 226 2e-58
gb|AAK42378.1| Conserved hypothetical protein [Sulfolobus solfat... 191 6e-48
gb|AAG20159.1| (AE005093) Vng1986c [Halobacterium sp. NRC-1] 166 2e-40
pir||E72692 hypothetical protein APE0957 - Aeropyrum pernix (str... 119 4e-26
gb|AAG18787.1| (AE004983) Vng0171c [Halobacterium sp. NRC-1] 108 7e-23
emb|CAB94559.1| (AL359152) conserved hypothetical protein [Strep... 83 3e-15
sp|Q10634|YD21_MYCTU HYPOTHETICAL 25.1 KDA PROTEIN RV1321 >gi|74... 74 2e-12
>pir||C75200 hypothetical protein PAB2263 - Pyrococcus abyssi (strain Orsay)
>gi|5457559|emb|CAB49050.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 503 bits (1281), Expect = e-142
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MRKVIIKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDG 60
MRKVIIKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDG
Sbjct: 1 MRKVIIKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDG 60
Query: 61 SFLIHQNKKREPVNWQPPGSKVTFKENSIISIRRRPYERLEVEIIEPYSLVVFLAEDYEE 120
SFLIHQNKKREPVNWQPPGSKVTFKENSIISIRRRPYERLEVEIIEPYSLVVFLAEDYEE
Sbjct: 61 SFLIHQNKKREPVNWQPPGSKVTFKENSIISIRRRPYERLEVEIIEPYSLVVFLAEDYEE 120
Query: 121 LALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKA 180
LALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKA
Sbjct: 121 LALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKA 180
Query: 181 DLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR 240
DLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR
Sbjct: 181 DLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR 240
Query: 241 SKQKTLDFFTP 251
SKQKTLDFFTP
Sbjct: 241 SKQKTLDFFTP 251
>pir||F71233 hypothetical protein PH0128 - Pyrococcus horikoshii
>gi|3256514|dbj|BAA29197.1| (AP000001) 253aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 253
Score = 443 bits (1126), Expect = e-123
Identities = 216/252 (85%), Positives = 238/252 (93%), Gaps = 1/252 (0%)
Query: 1 MRKVIIKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDG 60
M+KVI +ENP+ EE+KELLD+AEKHGGVVTIFARC+V+YEGRAKSELGEGDRI+IIKPDG
Sbjct: 1 MKKVITRENPTVEEVKELLDIAEKHGGVVTIFARCRVYYEGRAKSELGEGDRIVIIKPDG 60
Query: 61 SFLIHQNKKREPVNWQPPGSKVTFKENSIISIRRRPYERLEVEIIEPYSLVVFLAEDYEE 120
SFLIHQNKKREPVNWQPPGSKV+ +ENSIISIRR+P+ERLEVE++E Y++ VFLAEDYEE
Sbjct: 61 SFLIHQNKKREPVNWQPPGSKVSMRENSIISIRRKPHERLEVELMEVYAVTVFLAEDYEE 120
Query: 121 LALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKA 180
LALTGSEAEMA LIFENP VIEEGFKP++REK I+HGIVD+MG+DKDGNIVVLELKRRKA
Sbjct: 121 LALTGSEAEMAKLIFENPNVIEEGFKPMFREKQIKHGIVDIMGLDKDGNIVVLELKRRKA 180
Query: 181 DLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR 240
DLHAVSQLKRYVDSLKEEYGE VRGILVAPSLTEGAKKLLEKEGLEFRKLEPPK + KR
Sbjct: 181 DLHAVSQLKRYVDSLKEEYGEKVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKNNDNKR 240
Query: 241 S-KQKTLDFFTP 251
KQKTLDFFTP
Sbjct: 241 EVKQKTLDFFTP 252
>sp|Q57678|Y225_METJA HYPOTHETICAL PROTEIN MJ0225 >gi|2127999|pir||B64328 conserved
hypothetical protein MJ0225 - Methanococcus jannaschii
>gi|1590962|gb|AAB98210.1| (U67478) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 263
Score = 269 bits (681), Expect = 2e-71
Identities = 146/259 (56%), Positives = 187/259 (71%), Gaps = 14/259 (5%)
Query: 1 MRKVIIKENPSEEEIKELLDL-AEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPD 59
+ KV NP+ ++++ +D+ K+ ++ + ARCKV YEGRAKS+L EGDR+IIIKPD
Sbjct: 4 LEKVFYLTNPTTKDLENFIDMYVFKY--ILILLARCKVFYEGRAKSQLEEGDRVIIIKPD 61
Query: 60 GSFLIHQNKKREPVNWQPPGSKVTFK--ENSII--SIRRRPYERLEVEIIEPYSLVVFLA 115
G+FLIH++KKREPVNWQP GS + ++ +N I SIRR+P E L+V I E Y F
Sbjct: 62 GAFLIHKDKKREPVNWQPSGSSIIWEVEDNFFILKSIRRKPKEELKVVISEVYHACAFNC 121
Query: 116 EDYEELALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLEL 175
EDYEE+ L GSE+EMA +IF NP +IEEGFKPI RE I GIVD++G DK+ V+LEL
Sbjct: 122 EDYEEINLRGSESEMAEMIFRNPDLIEEGFKPISREYQIPTGIVDILGKDKENKWVILEL 181
Query: 176 KRRKADLHAVSQLKRYVDSLKEEYGEN-VRGILVAPSLTEGAKKLLEKEGLEFRKLEPPK 234
KRR+ADL AVSQLKRYV+ K +YGE+ VRGILV+PSLT GA+KLL++E LEF++L PPK
Sbjct: 182 KRRRADLQAVSQLKRYVEYFKNKYGEDKVRGILVSPSLTTGAEKLLKEENLEFKRLNPPK 241
Query: 235 ------KGNEKRSKQKTLD 247
K N K K LD
Sbjct: 242 GSKRDLKHNIKTKKTTVLD 260
>pir||G69109 conserved hypothetical protein MTH1816 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622949|gb|AAB86282.1| (AE000935) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 253
Score = 226 bits (570), Expect = 2e-58
Identities = 116/251 (46%), Positives = 170/251 (67%), Gaps = 7/251 (2%)
Query: 3 KVIIKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSF 62
K + ENPS +E L++ + +V I A C YEGRA+S L G+R+I+IKPDG+F
Sbjct: 5 KCKVSENPSIKEAYRLIEDGIRKRALVVILACCSASYEGRARSRLDAGERLIVIKPDGTF 64
Query: 63 LIHQNKKREPVNWQPPGSK--VTFKENSII--SIRRRPYERLEVEIIEPYSLVVFLAEDY 118
++HQ++K +PVNWQPP S+ K S+ SIRR P ERLEVEI E + + +LA D
Sbjct: 65 MVHQDRKVDPVNWQPPKSRSRAYIKRGSLYLESIRRDPEERLEVEIHEAHLVSYYLARDV 124
Query: 119 EELALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRR 178
+L + G E +M ++I +P +IE+GF+P+ RE + G +D++G D++G+++++ELK R
Sbjct: 125 HDLMVAGHENDMGDMIIMHPHLIEKGFRPVAREYAVTSGFIDILGKDENGSLMIIELKSR 184
Query: 179 KADLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNE 238
KA + AV QLKRYVD +E+ VRG+LVAPS+T A ++LE+EGLEFR++EPP++
Sbjct: 185 KAGVSAVKQLKRYVDEFRED-RVGVRGVLVAPSITHDAMEMLEEEGLEFREIEPPRELRS 243
Query: 239 KRSKQKTLDFF 249
R TLD F
Sbjct: 244 NRG--VTLDNF 252
>gb|AAK42378.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 236
Score = 191 bits (481), Expect = 6e-48
Identities = 98/222 (44%), Positives = 148/222 (66%), Gaps = 5/222 (2%)
Query: 9 NPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNK 68
NPS EI L + ++ IFA CKV+Y+GRA+S E R+II+KPDG+ +IH++
Sbjct: 7 NPSNTEIYSFLT-DRIYRELIVIFATCKVNYKGRAESVASESPRLIILKPDGTVIIHESV 65
Query: 69 KREPVNWQPPGSKVTFKEN---SIISIRRRPYERLEVEIIEPYSLVVFLAEDYEELALTG 125
KREP+NWQPPG+K+ + I++ R RP E +E+++ E + + ++ + + G
Sbjct: 66 KREPLNWQPPGTKIEIMNDYPLKIVAQRNRPKEVIEIDLKEVFYITSAEVKE-GDFTIKG 124
Query: 126 SEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAV 185
E ++ N I +NP +IEEGF P+ RE +G +D++G+DK GN V++E+KR KA L+A+
Sbjct: 125 REIDIVNTIIQNPSMIEEGFVPLTREYNTPYGKIDLIGLDKKGNFVIIEVKRSKAQLNAI 184
Query: 186 SQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEF 227
SQL RY ++E G+ +RGILVAP LT A++LL+K GLEF
Sbjct: 185 SQLYRYYLHMREIKGDKIRGILVAPDLTIHARELLQKLGLEF 226
>gb|AAG20159.1| (AE005093) Vng1986c [Halobacterium sp. NRC-1]
Length = 250
Score = 166 bits (417), Expect = 2e-40
Identities = 92/243 (37%), Positives = 137/243 (55%), Gaps = 5/243 (2%)
Query: 10 PSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNKK 69
P+ + + A ++G V+++ ARC+V Y GR LG+GDR+++ KPDG+FL+HQ
Sbjct: 9 PTPAAFVDAANAAFRNGAVLSVQARCEVEYNGRTSGYLGDGDRLLVAKPDGTFLVHQPTG 68
Query: 70 REPVNWQPPGSKVTFKENS----IISIRRRPYERLEVEIIEPYSLVVFLAEDYEELALTG 125
+PVNW P G V + + +++ R P ER+E + E Y + F AED +G
Sbjct: 69 HKPVNWMPGGGTVEARTSQGDAVLLARRSNPTERVETRLHEVYGVTRFDAEDGATYEESG 128
Query: 126 SEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAV 185
+EAEM I NP +E G + + E+ ++G +D VD DG VV+E+KR +A L+
Sbjct: 129 TEAEMHEYIEANPDALEAGLRIVEHERETKYGFIDFYAVDGDGTPVVIEVKRIQATLNHF 188
Query: 186 SQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKRSKQKT 245
QLKRYVD E ++VRG+LVAPS +E + L GLEF L + ++ K
Sbjct: 189 DQLKRYVDRYAET-NDDVRGMLVAPSASERVTRALRDNGLEFVALAEFGLDAKGATEAKL 247
Query: 246 LDF 248
DF
Sbjct: 248 TDF 250
>pir||E72692 hypothetical protein APE0957 - Aeropyrum pernix (strain K1)
>gi|5104626|dbj|BAA79941.1| (AP000060) 261aa long
hypothetical protein [Aeropyrum pernix]
Length = 261
Score = 119 bits (295), Expect = 4e-26
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 7/234 (2%)
Query: 6 IKENPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIH 65
+ +P+ EE LL+ +V + C YEGR S EGD+++I+KP G+ ++H
Sbjct: 13 VASSPTIEEAAGLLEKLLDGSSMVVVAGVCSSEYEGRGASVSTEGDKLLIVKPGGAVILH 72
Query: 66 QNKKREPVNWQPPGSKV-TFKENSIISI---RRRPYERLEVEIIEPYSLVVFLAEDYEEL 121
+ P+NWQP S + ++++ RR P E L++ + + +
Sbjct: 73 GPRGFRPLNWQPSTSHTEVATADGLLTLKFYRRTPREVLKIACGSIWYIAWVRFPEEGAF 132
Query: 122 ALTGSEAEMANLIFENPR-VIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKA 180
+ +E ++ + +PR ++ E + EK G D+ GVD+ GNIV++E+KR +A
Sbjct: 133 WMYMTEDDLRKAVALHPRELLGEDIRFFAEEKRTPSGKADLYGVDERGNIVIVEVKRVRA 192
Query: 181 DLHAVSQLKRYVDSLKEEYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPK 234
D AV QL+ YV + VRGILVAP +++ A++LLE GLEFR+++ K
Sbjct: 193 DESAVRQLEGYVRDYPTQ--AKVRGILVAPDISDAARRLLESRGLEFRRVDLKK 244
>gb|AAG18787.1| (AE004983) Vng0171c [Halobacterium sp. NRC-1]
Length = 240
Score = 108 bits (267), Expect = 7e-23
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 6/230 (2%)
Query: 9 NPSEEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNK 68
+P+ + A G V++ C GR++ +L G R ++ KPD + ++H
Sbjct: 7 DPTADRAAAFATDAAADGLTVSLIGSCVATLTGRSQRDLAAGVRTLLWKPDDTVVVHGAS 66
Query: 69 KREPVNWQPPGSKVTFKENSIISIR---RRPYERLEVEIIEPYSLVVFLAEDYEELALTG 125
R+P W G VT +++ L V ++ F A + ++G
Sbjct: 67 GRDPDAWAS-GGPVTVDAADGLTVACDGGHTAGALRVRFDAVHTATAFDAAGADATTVSG 125
Query: 126 SEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAV 185
+EA + + + + P ++E GF+P+ E+ G +D+ G D DG + +ELK +A A
Sbjct: 126 TEAALKDRVLDTPDLVEPGFQPLATERDTPAGPIDIYGRDADGTVTAVELKNVRAGPAAA 185
Query: 186 SQLKRYVDSLKE--EYGENVRGILVAPSLTEGAKKLLEKEGLEFRKLEPP 233
SQL+RYV +L+ VRGILVAP++T ++LL GL F + PP
Sbjct: 186 SQLQRYVAALRRTLHADATVRGILVAPAVTAKTRRLLADRGLTFSPVSPP 235
>emb|CAB94559.1| (AL359152) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 251
Score = 83.1 bits (202), Expect = 3e-15
Identities = 61/212 (28%), Positives = 103/212 (47%), Gaps = 18/212 (8%)
Query: 31 IFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIH-QNKKREPVNWQPPGSKV---TFKE 86
+ ARC V Y GR + L R+I++K DGS IH ++ +P+NW P + T +E
Sbjct: 32 VIARCSVDYAGRLTAHLPSAPRLILVKADGSVSIHADDRAYKPLNWMSPPCALKEGTGEE 91
Query: 87 NSIISIRRRPYERLEVEIIEPYSLVVFLAEDYEELAL------TGSEAEMANLIFENPRV 140
+ ++ + E+L + + E L + EL + G EA + L+ +
Sbjct: 92 EGVWTVVNKAGEKLIITMEE------ILHDSSHELGVDPGLIKDGVEAHLQELLADRIDT 145
Query: 141 IEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAVSQLKRYVDSL-KEEY 199
+ EG+ I RE G VD++ D G V +E+KRR ++ V QL RY++ L ++ +
Sbjct: 146 LGEGYTLIRREYMTAIGPVDILCRDAQGGTVAVEIKRR-GEIDGVEQLTRYLELLNRDPH 204
Query: 200 GENVRGILVAPSLTEGAKKLLEKEGLEFRKLE 231
VRG+ A + A+ L G+ + L+
Sbjct: 205 LAPVRGVFAAQEIKPQARVLATDRGIGCQVLD 236
>sp|Q10634|YD21_MYCTU HYPOTHETICAL 25.1 KDA PROTEIN RV1321 >gi|7476723|pir||E70769
hypothetical protein Rv1321 - Mycobacterium tuberculosis
(strain H37RV) >gi|1340087|emb|CAA98085.1| (Z73902)
hypothetical protein Rv1321 [Mycobacterium tuberculosis]
Length = 226
Score = 73.7 bits (178), Expect = 2e-12
Identities = 56/208 (26%), Positives = 100/208 (47%), Gaps = 10/208 (4%)
Query: 31 IFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNKKR-EPVNWQPPGSKVTFKENS- 88
+ A+C V Y GR + L R+++ K DGS +H + + +P+NW P +T +
Sbjct: 7 VIAQCTVDYIGRLTAHLPSARRLLLFKADGSVSVHADDRAYKPLNWMSPPCWLTEESGGQ 66
Query: 89 ----IISIRRRPYERLEVEIIEPYSLVVFLAEDYEELALTGSEAEMANLIFENPRVIEEG 144
++ + R+ +E IE S + L G EA + L+ E+ +++ EG
Sbjct: 67 APVWVVENKAGEQLRITIEGIEHDSSHELGVDP--GLVKDGVEAHLQALLAEHIQLLGEG 124
Query: 145 FKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAVSQLKRYVDSL-KEEYGENV 203
+ + RE G VD++ D+ G V +E+KRR ++ V QL RY++ L ++ V
Sbjct: 125 YTLVRREYMTAIGPVDLLCSDERGGSVAVEIKRR-GEIDGVEQLTRYLELLNRDSVLAPV 183
Query: 204 RGILVAPSLTEGAKKLLEKEGLEFRKLE 231
+G+ A + A+ L G+ L+
Sbjct: 184 KGVFAAQQIKPQARILATDRGIRCLTLD 211
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97840385
Number of Sequences: 2977
Number of extensions: 4265769
Number of successful extensions: 9787
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9767
Number of HSP's gapped (non-prelim): 10
length of query: 251
length of database: 189,106,746
effective HSP length: 57
effective length of query: 194
effective length of database: 154,992,987
effective search space: 30068639478
effective search space used: 30068639478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)