BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2266 (polB) DE:DNA POLYMERASE II SMALL SUBUNIT (2.7.7.7)
(619 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75199 DNA-directed DNA polymerase (EC 2.7.7.7) II small ch... 1240 0.0
pir||A71233 probable DNA-directed DNA polymerase (EC 2.7.7.7) PH... 995 0.0
pir||T43933 DNA-directed DNA polymerase (EC 2.7.7.7) chain 1 [va... 926 0.0
pir||B69054 DNA-directed DNA polymerase (EC 2.7.7.7) delta small... 315 1e-84
gi|11499379 conserved hypothetical protein [Archaeoglobus fulgid... 304 2e-81
sp|Q58113|Y702_METJA HYPOTHETICAL PROTEIN MJ0702 >gi|2128452|pir... 292 9e-78
emb|CAC11368.1| (AL445063) DNA polymerase II (PolB), small chain... 252 1e-65
gb|AAG20504.1| (AE005122) DNA polymerase type II small chain; Po... 250 4e-65
pir||T00922 DNA-directed DNA polymerase delta regulatory chain h... 71 5e-11
>pir||F75199 DNA-directed DNA polymerase (EC 2.7.7.7) II small chain PAB2266 -
Pyrococcus abyssi (strain Orsay)
>gi|5457554|emb|CAB49045.1| (AJ248283) DNA POLYMERASE II
SMALL SUBUNIT (2.7.7.7) [Pyrococcus abyssi]
Length = 619
Score = 1240 bits (3174), Expect = 0.0
Identities = 619/619 (100%), Positives = 619/619 (100%)
Query: 1 MDELVKALERAGYLLTPSAYYLLVDHFKEGKFSLVELVKFAKSKGVFIIDGDLAYEFLQF 60
MDELVKALERAGYLLTPSAYYLLVDHFKEGKFSLVELVKFAKSKGVFIIDGDLAYEFLQF
Sbjct: 1 MDELVKALERAGYLLTPSAYYLLVDHFKEGKFSLVELVKFAKSKGVFIIDGDLAYEFLQF 60
Query: 61 LGLGVPQEIKESYISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPEISTT 120
LGLGVPQEIKESYISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPEISTT
Sbjct: 61 LGLGVPQEIKESYISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPEISTT 120
Query: 121 EEEIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIGEEKEYSKYEDV 180
EEEIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIGEEKEYSKYEDV
Sbjct: 121 EEEIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIGEEKEYSKYEDV 180
Query: 181 VIEWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLSKLK 240
VIEWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLSKLK
Sbjct: 181 VIEWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLSKLK 240
Query: 241 RILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGIVKVFLPK 300
RILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGIVKVFLPK
Sbjct: 241 RILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGIVKVFLPK 300
Query: 301 DSEDYREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISD 360
DSEDYREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISD
Sbjct: 301 DSEDYREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISD 360
Query: 361 IHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLV 420
IHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLV
Sbjct: 361 IHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLV 420
Query: 421 IPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIII 480
IPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIII
Sbjct: 421 IPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIII 480
Query: 481 SNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKVPIA 540
SNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKVPIA
Sbjct: 481 SNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKVPIA 540
Query: 541 PDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPAKVP 600
PDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPAKVP
Sbjct: 541 PDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPAKVP 600
Query: 601 VVDVESARVVKVLDFSGWC 619
VVDVESARVVKVLDFSGWC
Sbjct: 601 VVDVESARVVKVLDFSGWC 619
>pir||A71233 probable DNA-directed DNA polymerase (EC 2.7.7.7) PH0123 -
Pyrococcus horikoshii >gi|3256509|dbj|BAA29192.1|
(AP000001) 622aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 622
Score = 995 bits (2545), Expect = 0.0
Identities = 490/622 (78%), Positives = 544/622 (86%), Gaps = 3/622 (0%)
Query: 1 MDELVKALERAGYLLTPSAYYLLVDHFKEGKFSLVELVKFAKSKGVFIIDGDLAYEFLQF 60
MDE VK L + GYL+TPSAYYLLV HF EGKFSL+EL+KFAKS+ FIID ++A EFL+
Sbjct: 1 MDEFVKGLMKNGYLITPSAYYLLVGHFNEGKFSLIELIKFAKSRETFIIDDEIANEFLKS 60
Query: 61 LGLGV--PQEIKESYISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPEIS 118
+G V PQEIKE YISTGE ++K + +E E S +S+GE + +E P +
Sbjct: 61 IGAEVELPQEIKEGYISTGEGSQKVPDHEELEKITNESSVESSISTGETPKTEELQPTLD 120
Query: 119 TTEEEIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIGEE-KEYSKY 177
EEEIG +E +SSISTG EV NG +VVV DKYGYP Y PEEI EE +EY KY
Sbjct: 121 ILEEEIGDIEGGESSISTGDEVPEVENNNGGTVVVFDKYGYPFTYVPEEIEEELEEYPKY 180
Query: 178 EDVVIEWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLS 237
EDV IE NP++ V IEK+YE+KFDVR+VKL+PPKVK+GSGKEGEIIVEAYASLF+SRL
Sbjct: 181 EDVTIEINPNLEVVPIEKDYEIKFDVRRVKLKPPKVKSGSGKEGEIIVEAYASLFRSRLR 240
Query: 238 KLKRILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGIVKVF 297
KL+RILRENPE+SNV+DI KL YV GDEEVTIIGLVNSK+ET++GLIFEVED+T VKVF
Sbjct: 241 KLRRILRENPEVSNVIDIKKLKYVKGDEEVTIIGLVNSKKETSKGLIFEVEDQTDRVKVF 300
Query: 298 LPKDSEDYREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAIL 357
LPKDSEDYREA KVLPDAVVAFKG YSK+GIFFAN+FYLPDVPLYRKQKPPLEEKVYA+L
Sbjct: 301 LPKDSEDYREALKVLPDAVVAFKGVYSKRGIFFANRFYLPDVPLYRKQKPPLEEKVYAVL 360
Query: 358 ISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYS 417
SDIHVGS+EFCEKAF+KFLEWLNG+VESKEEEEIVSR++YLIIAGDVVDGIGIYPGQYS
Sbjct: 361 TSDIHVGSKEFCEKAFIKFLEWLNGYVESKEEEEIVSRIRYLIIAGDVVDGIGIYPGQYS 420
Query: 418 DLVIPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNA 477
DL+IPDIFDQYEALANLL+NVP+HIT+FIGPGNHDAARPAIPQPEFY+EYAKP+YKLKN
Sbjct: 421 DLIIPDIFDQYEALANLLSNVPKHITIFIGPGNHDAARPAIPQPEFYEEYAKPLYKLKNT 480
Query: 478 IIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKV 537
+IISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKV
Sbjct: 481 VIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKV 540
Query: 538 PIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPA 597
PIAPDPEDLLVIEEVPDLVQMGHVHVYD VYRGVQLVNSATWQAQTEFQKMVNIVPTP
Sbjct: 541 PIAPDPEDLLVIEEVPDLVQMGHVHVYDTAVYRGVQLVNSATWQAQTEFQKMVNIVPTPG 600
Query: 598 KVPVVDVESARVVKVLDFSGWC 619
VP+VDVESARV+KVLDFS WC
Sbjct: 601 LVPIVDVESARVIKVLDFSRWC 622
>pir||T43933 DNA-directed DNA polymerase (EC 2.7.7.7) chain 1 [validated] -
Pyrococcus furiosus >gi|2967436|dbj|BAA25163.1| (D84670)
DNA polymerase II subunit 1 [Pyrococcus furiosus]
Length = 613
Score = 926 bits (2368), Expect = 0.0
Identities = 465/626 (74%), Positives = 531/626 (84%), Gaps = 20/626 (3%)
Query: 1 MDELVKALERAGYLLTPSAYYLLVDHFKEGKFSLVELVKFAKSKGVFIIDGDLAYEFLQF 60
MDE VK+L +A YL+TPSAYYLL +++++G+FS+VELVKFA+S+ +II LA EFL+
Sbjct: 1 MDEFVKSLLKANYLITPSAYYLLREYYEKGEFSIVELVKFARSRESYIITDALATEFLKV 60
Query: 61 LGLG--VPQEIKESYISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPEIS 118
GL +P E K ++STGE SQ+ ++ E G ++S QE+KE IS
Sbjct: 61 KGLEPILPVETKGGFVSTGE-------SQKEQSYEESFGTKEEIS----QEIKEGESFIS 109
Query: 119 T----TEEEIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIG-EEKE 173
T EEE+ + + + I E+ N +NG +V DKYGYP++YAPEEI EEKE
Sbjct: 110 TGSEPLEEELNSIGIEE--IGANEELVSNGNDNGGEAIVFDKYGYPMVYAPEEIEVEEKE 167
Query: 174 YSKYEDVVIEWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFK 233
YSKYED+ I NP V+I+++Y+V FDVR VKL+PPKVKNG+GKEGEIIVEAYASLF+
Sbjct: 168 YSKYEDLTIPMNPDFNYVEIKEDYDVVFDVRNVKLKPPKVKNGNGKEGEIIVEAYASLFR 227
Query: 234 SRLSKLKRILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGI 293
SRL KL++ILRENPE+ NVVDIGKL YV DE VTIIGLVNSKRE N+GLIFE+ED TG
Sbjct: 228 SRLKKLRKILRENPELDNVVDIGKLKYVKEDETVTIIGLVNSKREVNKGLIFEIEDLTGK 287
Query: 294 VKVFLPKDSEDYREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKV 353
VKVFLPKDSEDYREAFKVLPDAVVAFKG YSK+GI +ANKFYLPDVPLYR+QKPPLEEKV
Sbjct: 288 VKVFLPKDSEDYREAFKVLPDAVVAFKGVYSKRGILYANKFYLPDVPLYRRQKPPLEEKV 347
Query: 354 YAILISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYP 413
YAILISDIHVGS+EFCE AF+KFLEWLNG+VE+KEEEEIVSRVKYLIIAGDVVDG+G+YP
Sbjct: 348 YAILISDIHVGSKEFCENAFIKFLEWLNGNVETKEEEEIVSRVKYLIIAGDVVDGVGVYP 407
Query: 414 GQYSDLVIPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYK 473
GQY+DL IPDIFDQYEALANLL++VP+HITMFI PGNHDAAR AIPQPEFYKEYAKPIYK
Sbjct: 408 GQYADLTIPDIFDQYEALANLLSHVPKHITMFIAPGNHDAARQAIPQPEFYKEYAKPIYK 467
Query: 474 LKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTF 533
LKNA+IISNPAVIRLHGRDFLIAHGRGIEDVV VPGLTHHKPGLPMVELLKMRH+AP F
Sbjct: 468 LKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVGSVPGLTHHKPGLPMVELLKMRHVAPMF 527
Query: 534 GGKVPIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIV 593
GGKVPIAPDPEDLLVIEEVPD+V MGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIV
Sbjct: 528 GGKVPIAPDPEDLLVIEEVPDVVHMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIV 587
Query: 594 PTPAKVPVVDVESARVVKVLDFSGWC 619
PTPAKVPVVD+++A+VVKVLDFSGWC
Sbjct: 588 PTPAKVPVVDIDTAKVVKVLDFSGWC 613
>pir||B69054 DNA-directed DNA polymerase (EC 2.7.7.7) delta small chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622517|gb|AAB85882.1| (AE000903) DNA polymerase
delta small subunit [Methanobacterium
thermoautotrophicum]
Length = 482
Score = 315 bits (798), Expect = 1e-84
Identities = 180/434 (41%), Positives = 269/434 (61%), Gaps = 26/434 (5%)
Query: 186 PSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLSKLKRILRE 245
P + P + + ++EV D SG+ G++I + F SR S LK +L +
Sbjct: 72 PLMVPAERDFDFEVISDTSNRSYT-------SGEIGDMI-----AYFNSRYSSLKNLLSK 119
Query: 246 NPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRET-NRGLIFEVEDKTGIVKVFLPKDSED 304
PE+ + I L G++ V+IIG+VN R T N I E+ED TG + V + ++
Sbjct: 120 RPELKGHIPIADLR--GGEDVVSIIGMVNDVRNTKNNHRIIELEDDTGEISVVVHNENHK 177
Query: 305 -YREAFKVLPDAVVAFKGFYSKKGIFF-ANKFYLPDVPLYRKQKPPLEEKVYAILISDIH 362
+ ++ K++ D VV G +KKG F A++ + P VP R Q+ ++ V ISD+H
Sbjct: 178 LFEKSEKIVRDEVVGVHG--TKKGRFVVASEIFHPGVP--RIQEKEMDFSV--AFISDVH 231
Query: 363 VGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLVIP 422
+GS+ F E AF+KF++W+NG S+E+ + + VKYL++AGD+VDGIGIYPGQ +L+I
Sbjct: 232 IGSQTFLEDAFMKFVKWINGDFGSEEQRSLAADVKYLVVAGDIVDGIGIYPGQEKELLIR 291
Query: 423 DIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIIISN 482
DI +QYE A L ++ I + + PGNHD++R A PQP +EYAK +Y ++N +SN
Sbjct: 292 DIHEQYEEAARLFGDIRSDIKIVMIPGNHDSSRIAEPQPAIPEEYAKSLYSIRNIEFLSN 351
Query: 483 PAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKVPIAPD 542
P+++ L G LI HGR +D+ V GL+H + L M ELL+ RHLAP +G + P+A +
Sbjct: 352 PSLVSLDGVRTLIYHGRSFDDMAMSVNGLSHERSDLIMEELLEKRHLAPIYGERTPLASE 411
Query: 543 PEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPAKVPVV 602
ED LVI+EVP ++ GHVH+ Y+GV L+NS T+Q+QTEFQK+ NIVPT +VPV+
Sbjct: 412 IEDHLVIDEVPHVLHTGHVHINAYKKYKGVHLINSGTFQSQTEFQKIYNIVPTCGQVPVL 471
Query: 603 DVESARVVKVLDFS 616
+ V+K+L+FS
Sbjct: 472 ---NRGVMKLLEFS 482
>gi|11499379 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7428083|pir||E69473 probable DNA-directed DNA
polymerase (EC 2.7.7.7) delta small chain -
Archaeoglobus fulgidus >gi|2648756|gb|AAB89458.1|
(AE000979) conserved hypothetical protein [Archaeoglobus
fulgidus]
Length = 488
Score = 304 bits (771), Expect = 2e-81
Identities = 170/417 (40%), Positives = 244/417 (57%), Gaps = 18/417 (4%)
Query: 187 SVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEG-EIIVEAYASLFKSRLSKLKRILRE 245
++TP E+ E +V+ + +K+ +GK + VE + F SRL KL RI+R
Sbjct: 73 TLTPRPEERKVE---EVKASCIALKVIKDITGKSSCQGNVEDFLMYFNSRLEKLSRIIRS 129
Query: 246 NPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRGLIFEVEDKTGIVK-VFLPKDSED 304
+ + GK+ V+++G+VN E +ED TG + V K++E
Sbjct: 130 RVNTTPIAHAGKVR-----GNVSVVGMVNEVYERGDKCYIRLEDTTGTITCVATGKNAEV 184
Query: 305 YREAFKVLPDAVVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISDIHVG 364
RE +L D V+ G K +AN+ PDVP+ + + Y + +SD H G
Sbjct: 185 ARE---LLGDEVIGVTGLL-KGSSLYANRIVFPDVPINGNGEK--KRDFYIVFLSDTHFG 238
Query: 365 SREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLVIPDI 424
S+EF EK + F+ WL G V K+ + + +VKY++IAGD+VDGIG+YPGQ DL I DI
Sbjct: 239 SKEFLEKEWEMFVRWLKGEVGGKKSQNLAEKVKYIVIAGDIVDGIGVYPGQEDDLAISDI 298
Query: 425 FDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIIISNPA 484
+ QYE A+ L +P+ I + + PGNHDA R A PQP F E + ++ KN + NPA
Sbjct: 299 YGQYEFAASHLDEIPKEIKIIVSPGNHDAVRQAEPQPAFEGEI-RSLFP-KNVEHVGNPA 356
Query: 485 VIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKVPIAPDPE 544
+ + G LI HGR I+D++S +P L++ +P M ELLK RHL+P +GG+ P+AP+ E
Sbjct: 357 YVDIEGVKVLIYHGRSIDDIISKIPRLSYDEPQKVMEELLKRRHLSPIYGGRTPLAPERE 416
Query: 545 DLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPAKVPV 601
D LVIE+VPD++ GH+H Y YRGV +VNS+TWQAQTEFQK VN+ P P V V
Sbjct: 417 DYLVIEDVPDILHCGHIHTYGTGFYRGVFMVNSSTWQAQTEFQKKVNLNPMPGNVAV 473
>sp|Q58113|Y702_METJA HYPOTHETICAL PROTEIN MJ0702 >gi|2128452|pir||F64387 probable
DNA-directed DNA polymerase (EC 2.7.7.7) delta small
chain - Methanococcus jannaschii
>gi|1591417|gb|AAB98694.1| (U67516) DNA polymerase delta
small subunit [Methanococcus jannaschii]
Length = 594
Score = 292 bits (739), Expect = 9e-78
Identities = 200/607 (32%), Positives = 319/607 (51%), Gaps = 62/607 (10%)
Query: 14 LLTPSAYYLLVDHFKEGKFSLVELVK-FAKSKGVFIIDGDLAYEFLQ-FLGLGVPQEIKE 71
LL+P+ Y L + +E L++ ++ F K FI+ L +FL FL + + I E
Sbjct: 13 LLSPTVYEKLKNFDEEKLKRLIQKIREFKKYNNAFIL---LDEKFLDIFLQKDLDEIINE 69
Query: 72 S-------YISTGEEAEKTVESQETRASELEEGGVSQVSSGELQELKEESPE--ISTTEE 122
Y + EE EK E ++ E EE ++ +++ +K+E E I ++E
Sbjct: 70 YKDFDFIFYYTGEEEKEKPKEVKKEIKKETEE----KIEKEKIEFVKKEEKEQFIKKSDE 125
Query: 123 EIGGLELVQSSISTGSEVEYNNGENGESVVVLDKYGYPILYAPEEIGEEKEYSKYEDVVI 182
++ E ++ IS + E + E + E I + KE I
Sbjct: 126 DVE--EKLKQLISKEEKKEDFDAERAKRY--------------EHITKIKESVNSR---I 166
Query: 183 EWNPSVTPVQIEKNYEVKFDVRQVKLRPPKVKNGSGKEGEIIVEAYASLFKSRLSKLKRI 242
+W I K+ + ++ + V S G I E + F+ R +LK
Sbjct: 167 KW--------IAKDIDAVIEIYE----DSDVSGKSTCTGTI--EDFVKYFRDRFERLKVF 212
Query: 243 LRENPEISN--VVDIGKLNYVSGDEEVTIIGLVNSKRETNRG-LIFEVEDKTGIVKVFLP 299
+ + + DI K+ G +++ ++G+V+ T G LI +ED + LP
Sbjct: 213 IERKAQRKGYPLKDIKKMK---GQKDIFVVGIVSDVDSTRNGNLIVRIEDTEDEATLILP 269
Query: 300 KDS-EDYREAFKVLPDAVVAFKGFYSKKGI-FFANKFYLPDVPLYRKQKPPLEEKVYAIL 357
K+ E + +L D V+ G SK G + ++ P +P K+ ++E++Y
Sbjct: 270 KEKIEAGKIPDDILLDEVIGAIGTVSKSGSSIYVDEIIRPALP--PKEPKRIDEEIYMAF 327
Query: 358 ISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYS 417
+SDIHVGS+EF K F KF+ +LNG V+++ EE++VSR+KY+ IAGD+VDG+G+YPGQ
Sbjct: 328 LSDIHVGSKEFLHKEFEKFIRFLNGDVDNELEEKVVSRLKYICIAGDLVDGVGVYPGQEE 387
Query: 418 DLVIPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNA 477
DL DI +QY +A L +PEHI++ I PGNHDA RPA PQP+ ++ K ++ N
Sbjct: 388 DLYEVDIIEQYREIAMYLDQIPEHISIIISPGNHDAVRPAEPQPKLPEKITK-LFNRDNI 446
Query: 478 IIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELLKMRHLAPTFGGKV 537
+ NP + +HG D L+ HGR +D+V + ++ P M EL+K R L PT+GG+
Sbjct: 447 YFVGNPCTLNIHGFDTLLYHGRSFDDLVGQIRAASYENPVTIMKELIKRRLLCPTYGGRC 506
Query: 538 PIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQTEFQKMVNIVPTPA 597
PIAP+ +D LVI+ D++ GH+H+ +YRGV +VNS T+Q QT+FQK + I PTPA
Sbjct: 507 PIAPEHKDYLVIDRDIDILHTGHIHINGYGIYRGVVMVNSGTFQEQTDFQKRMGISPTPA 566
Query: 598 KVPVVDV 604
VP++++
Sbjct: 567 IVPIINM 573
>emb|CAC11368.1| (AL445063) DNA polymerase II (PolB), small chain related protein
[Thermoplasma acidophilum]
Length = 488
Score = 252 bits (636), Expect = 1e-65
Identities = 156/451 (34%), Positives = 237/451 (51%), Gaps = 31/451 (6%)
Query: 179 DVVIEWNPSVTPVQIEKNYEVKFDVRQVK--LRPPKVKNG-----SGKEGEIIVEAYASL 231
D +I+++ S + KN + D + V+ + PKV+N +E + +
Sbjct: 51 DKLIKYSSSSLIEDLIKNSDGYIDEKYVERYVSRPKVRNDYEVYLPDVRFNASIEDFRKM 110
Query: 232 FKSRLSKLKRILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRG-LIFEVEDK 290
F S+ KL +I+ + + + I G EV ++G+V+ T G +ED
Sbjct: 111 FVSKYEKLSKIITSSSSMRGSISIKTAKRSQG--EVKVVGMVSEVSMTKNGHKRIVIEDL 168
Query: 291 TGIVKVFLPKDSEDYREAFKVLPDAVVAFKGFYS---KKGIFFANKFYLPDVPLYRKQKP 347
+ + KD E +L D V+ G S K + F N+ PD+P YR
Sbjct: 169 DDSITAIVMKDRGPVNEI--ILEDEVIGIIGSVSQSSKDPVIFVNEIIRPDIP-YRVIDE 225
Query: 348 PLEEKVYAILISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVD 407
E VY ISDIHVGS+ F + F + W++G + SRVKYLI++GDVVD
Sbjct: 226 EKHEPVYVASISDIHVGSKTFRKNEFEAMVRWISG------SDPDASRVKYLILSGDVVD 279
Query: 408 GIGIYPGQYSDLVIPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEF---Y 464
GIG+YP Q +DL I + +QY LA L +VPE + +F+ PGNHD R + PQP F
Sbjct: 280 GIGVYPDQENDLEILNPLEQYANLAEYLVDVPEDVKVFVMPGNHDTVRLSEPQPVFPGKI 339
Query: 465 KEYAKPIYKLKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVELL 524
++ +P N + NP ++L G++ L+ HG + D++ +PG + G + +L
Sbjct: 340 RDLFEP-----NVAFLPNPYNLKLEGKNVLVYHGMSLNDMIELIPGANYDSIGKAIEAIL 394
Query: 525 KMRHLAPTFGGKVPIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQAQT 584
RHL+P +GG P+ P D VIEEVPD+ GH+H + Y+GV+ VNS+TWQ+QT
Sbjct: 395 VRRHLSPKYGGNTPMIPSAVDYHVIEEVPDIFITGHIHSHYIGNYKGVRYVNSSTWQSQT 454
Query: 585 EFQKMVNIVPTPAKVPVVDVESARVVKVLDF 615
E+QKM+N P P+K+ + D+ S V+ V DF
Sbjct: 455 EYQKMMNFNPKPSKLTLFDLYSRSVI-VKDF 484
>gb|AAG20504.1| (AE005122) DNA polymerase type II small chain; PolA1 [Halobacterium
sp. NRC-1]
Length = 392
Score = 250 bits (631), Expect = 4e-65
Identities = 151/384 (39%), Positives = 217/384 (56%), Gaps = 19/384 (4%)
Query: 228 YASLFKSRLSKLKRILRENPEISNVVDIGKLNYVSGDEEVTIIGLVNSKRETNRG-LIFE 286
+ S+F+ R +L LR N L + G + I+G+VN R T G E
Sbjct: 14 FVSVFRDRYDRLAAQLRGRV---NHRPTSALASMPGGSDAAIVGMVNDIRSTTSGHWRVE 70
Query: 287 VEDKTGIVKVFLPKDSEDYREAFKVLPDAVVAFKGFYSKKG-IFFANKFYLPDVPLYRKQ 345
+ED G+ V + KD + +L D V+A G + G I FA+ Y P+VP R
Sbjct: 71 LEDTNGVFPVLVLKDRDVSDLVDDLLLDEVIAVSGTLADDGTILFADDIYFPEVP--RTY 128
Query: 346 KPPLEEK-VYAILISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYLIIAGD 404
P ++ V A LISD+HVGS+EF A+ F +WL H + E V+YL+IAGD
Sbjct: 129 SPSTADRSVQAALISDVHVGSQEFAADAWRSFADWL--HTPAAES------VEYLLIAGD 180
Query: 405 VVDGIGIYPGQYSDLVIPDIFDQYEALANLLANVPEHITMFIGPGNHDAARPAIPQPEFY 464
+V+G+G+YPGQ +L I DI+DQYE A L +VP + + + PGNHDA R A PQP F
Sbjct: 181 MVEGVGVYPGQDEELDIVDIYDQYETFAEHLKDVPGDMEIVMIPGNHDAVRLAEPQPAFD 240
Query: 465 KEYAKPIYKLKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPG--LTHHKPGLPMVE 522
+E + I + +A I SNP+ + + G L+ HG +++V++ P +T+ P M
Sbjct: 241 EEL-RSIMRAHDARITSNPSTVTIDGVSVLLYHGVSLDEVIAEHPSDDVTYDDPQNAMEL 299
Query: 523 LLKMRHLAPTFGGKVPIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNSATWQA 582
LLK RH+AP FGG+ +AP+ ED L I+ VPD+ GHVH ++ V+LVNS WQ
Sbjct: 300 LLKKRHVAPPFGGRTRLAPEAEDHLAIDTVPDVFHTGHVHKLGVGIHHNVRLVNSGCWQH 359
Query: 583 QTEFQKMVNIVPTPAKVPVVDVES 606
QT FQ+ VNI P A P++D+++
Sbjct: 360 QTAFQESVNISPDVATAPILDLDT 383
>pir||T00922 DNA-directed DNA polymerase delta regulatory chain homolog T24P15.3
- Arabidopsis thaliana >gi|2673906|gb|AAB88640.1|
(AC002561) putative DNA polymerase delta small subunit
[Arabidopsis thaliana]
Length = 456
Score = 70.6 bits (170), Expect = 5e-11
Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 13/265 (4%)
Query: 316 VVAFKGFYSKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISDIHVGSREFCEKAFLK 375
VVA G + G FF +P ++ L+E Y +L+S + +GS+ F
Sbjct: 154 VVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQL 213
Query: 376 FLEWLNGHVESKEEEEIVSRVKYLIIAGD-------VVDGIGIYPGQYSDLVIPDIFDQY 428
++ + GH+ +EE+ + +++ +++IAG+ +++G + + +++
Sbjct: 214 LVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQVLITFNLASKDQSTLYEPI 273
Query: 429 EALANLLANVPEHITMFIGPGNHDAARPAIPQPEFYKEYAKPIYKLKNAIIISNPAVIRL 488
+ L +L+ + +++ I PG +D A A+PQ + +NP +
Sbjct: 274 KELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDV 333
Query: 489 HGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDL 546
FL G+ I+D+ + + K L VE L+ RHLAPT + P D
Sbjct: 334 DNIRFLGTSGQNIDDLGKY----SEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDP 389
Query: 547 LVIEEVPDLVQMGHVHVYDAVVYRG 571
+IE P + +G+ YD + +G
Sbjct: 390 FLIETCPHVYFVGNQDKYDNRLIKG 414
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242907040
Number of Sequences: 2977
Number of extensions: 11223641
Number of successful extensions: 33541
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33508
Number of HSP's gapped (non-prelim): 10
length of query: 619
length of database: 189,106,746
effective HSP length: 59
effective length of query: 560
effective length of database: 153,796,013
effective search space: 86125767280
effective search space used: 86125767280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 168 (69.9 bits)