BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2270 (Pk-REC) DE:Recombinase
(239 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75199 recombinase PAB2270 - Pyrococcus abyssi (strain Orsa... 474 e-133
sp|O57859|R51L_PYRHO PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 408 e-113
pir||T43936 probable DNA repair protein [imported] - Pyrococcus ... 380 e-105
pir||T46872 DNA repair protein rec [validated] - Pyrococcus sp >... 289 3e-77
gb|AAG19917.1| (AE005075) DNA repair protein; RadA2 [Halobacteri... 155 3e-37
gb|AAC34998.1| (AF052597) recombinase [Pyrococcus furiosus] 127 1e-28
pir||F75214 DNA repair protein rad51 (rada) PAB0164 - Pyrococcus... 125 6e-28
gi|11499679 DNA repair protein REC [Archaeoglobus fulgidus] >gi|... 124 8e-28
sp|Q57702|R51L_METJA PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 122 3e-27
pir||D72766 probable radA protein APE0119 - Aeropyrum pernix (st... 122 5e-27
dbj|BAA88984.1| (AB026115) RadA [Pyrobaculum islandicum] 120 2e-26
gb|AAD33955.1|AF145465_1 (AF145465) recombination/repair protein... 118 4e-26
gi|6321027 meiosis-specific protein related to RecA and Rad51p. ... 117 1e-25
emb|CAC12165.1| (AL445066) DNA repair protein RAD51 related prot... 115 4e-25
sp|O50248|R51L_METMP PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 113 1e-24
gi|6320942 RecA homolog; Rad51p colocalizes to ~ 65 spots with D... 113 2e-24
sp|O27728|R51L_METTH PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|... 112 3e-24
sp|O27436|RADA_METTH RADA PROTEIN >gi|7448303|pir||A69051 DNA re... 111 1e-23
sp|O42634|DMC1_SCHPO MEIOTIC RECOMBINATION PROTEIN DMC1 >gi|1127... 110 1e-23
pir||T39157 meiotic recombination protein - fission yeast (Schi... 109 4e-23
gi|11498598 DNA repair protein RAD51 (radA) [Archaeoglobus fulgi... 109 4e-23
gb|AAC39117.1| (AF064516) Rad51 [Tetrahymena thermophila] 106 2e-22
dbj|BAA89533.1| (AB036801) LIM15/DMC1 homolog [Coprinus cinereus] 105 4e-22
gb|AAB53330.1| (U94993) Rad51 homolog [Bombyx mori] 104 1e-21
sp|P36601|RA51_SCHPO DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|629906... 103 2e-21
emb|CAA80878.1| (Z24756) RecA-like protein [Schizosaccharomyces ... 103 2e-21
pir||S37672 RAD51 protein - fission yeast (Schizosaccharomyces p... 103 2e-21
sp|Q96449|DMC1_SOYBN MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 103 2e-21
gb|AAC16335.1| (AF062380) Dmc1 homolog [Leishmania major] 102 3e-21
gb|AAC23703.1| (U21905) Rah1 [Coprinus cinereus] 102 3e-21
dbj|BAA92869.1| (AB040404) Pprad51 [Penicillium paxilli] 102 3e-21
gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfat... 102 4e-21
pir||S36159 RAD51 protein homolog - fission yeast (Schizosacchar... 102 4e-21
gb|AAF42940.1|AF234170_1 (AF234170) DMC1 protein [Hordeum vulgare] 102 4e-21
sp|Q55075|RADA_SULSO DNA REPAIR PROTEIN RADA >gi|2129447|pir||S7... 102 5e-21
sp|Q99133|RA51_USTMA DNA REPAIR PROTEIN RAD51 >gi|1480734|gb|AAC... 101 6e-21
emb|CAB02454.1| (Z80341) uvsC [Aspergillus nidulellus] 101 6e-21
gb|AAB39323.2| (U63728) ARECA [Aspergillus nidulans] 101 6e-21
gb|AAC16334.1| (AF062379) Rad51 homolog [Leishmania major] 101 8e-21
emb|CAA73605.1| (Y13144) Rad51 homologue [Trypanosoma brucei] 101 1e-20
gb|AAD51713.1|AF174136_1 (AF174136) RAD51 [Trypanosoma brucei] 101 1e-20
sp|P50265|DLH1_CANAL MEIOTIC RECOMBINATION PROTEIN DLH1 (DMC1 HO... 100 1e-20
pir||S70629 Rad51 homolog mei-3 - Neurospora crassa >gi|2182133|... 100 1e-20
gb|AAD16063.1| (AF090197) recombination/repair protein RadA [Cen... 100 2e-20
sp|Q49593|RADA_METJA DNA REPAIR PROTEIN RADA >gi|2127856|pir||E6... 99 4e-20
pir||S71095 radA protein - Methanococcus jannaschii 99 4e-20
emb|CAC12231.1| (AL445066) probable DNA repair protein Rad51 (Ra... 99 4e-20
sp|Q39009|DMC1_ARATH MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 99 6e-20
gb|AAB37762.1| (U43528) RAD51 homolog AtRad51 [Arabidopsis thali... 99 6e-20
gb|AAF74403.1|AF198107_3 (AF198107) DNA repair protein RAD51 [Gi... 99 6e-20
pir||T37305 rad51 protein, short isoform - Caenorhabditis elegan... 98 1e-19
pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans 98 1e-19
gb|AAC49617.1| (U76670) AtDMC1 [Arabidopsis thaliana] 97 2e-19
sp|P37384|DMC1_LILLO MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG ... 97 2e-19
sp|Q40134|RA51_LYCES DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|744830... 97 2e-19
sp|Q06609|RA51_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|2136... 96 4e-19
gi|4506389 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [... 96 4e-19
dbj|BAA78377.1| (AB020740) Rad51 [Cynops pyrrhogaster] 96 4e-19
gi|11431556 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) ... 96 4e-19
sp|P37383|RA51_CHICK DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|479915... 96 5e-19
gi|6755276 Rad51 homolog (S. cerevisiae) [Mus musculus] >gi|5857... 96 5e-19
gb|AAD32030.1|AF079429_1 (AF079429) RAD51 homolog RAD51B [Zea mays] 96 5e-19
sp|P70099|RA51_CRIGR DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|1552... 95 6e-19
sp|Q91918|R511_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 1 (XRAD51.... 95 8e-19
sp|O77507|RA51_RABIT DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|3387... 94 1e-18
gb|AAD32029.1|AF079428_1 (AF079428) RAD51 homolog RAD51A [Zea mays] 94 1e-18
sp|Q91917|R512_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 2 (XRAD51.... 93 2e-18
pir||H71450 probable DNA repair protein - Pyrococcus horikoshii ... 92 4e-18
gi|6753650 disrupted meiotic cDNA 1 homolog [Mus musculus] >gi|2... 90 3e-17
dbj|BAB16892.1| (AB041944) DMC1 [Cynops pyrrhogaster] 89 6e-17
sp|Q27297|RA51_DROME DNA REPAIR PROTEIN RAD51 HOMOLOG (RECA PROT... 88 1e-16
sp|Q14565|DMC1_HUMAN MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HO... 87 1e-16
gi|5901996 DMC1 (dosage suppressor of mck1, yeast homolog) meios... 87 1e-16
emb|CAB45656.1| (AL022320) dJ199H16.1 (DMC1 ((dosage suppressor ... 87 1e-16
gb|AAC23499.1| (AF008421) RadA [Methanococcus voltae] 85 9e-16
gb|AAB53331.1| (U94994) Dmc1 homolog [Bombyx mori] 81 1e-14
emb|CAC01068.1| (AL390935) probable DNA repair protein rad51 hom... 79 4e-14
gi|10835029 RAD51 (S. cerevisiae)-like 1 [Homo sapiens] >gi|1143... 78 1e-13
emb|CAA75680.1| (Y15571) possible altenative splicing. Variation... 78 1e-13
gb|AAD16078.1| (AF090212) recombination/repair protein RadA [unc... 75 8e-13
gb|AAD16082.1| (AF090216) recombination/repair protein RadA [unc... 75 8e-13
sp|O66827|RADA_AQUAE DNA REPAIR PROTEIN RADA HOMOLOG (DNA REPAIR... 75 1e-12
gb|AAB82635.1| (AC002387) putative RAD51C-like DNA repair protei... 73 2e-12
gb|AAG20547.1| (AE005125) DNA repair protein; RadA1 [Halobacteri... 73 3e-12
gi|6755278 RAD51 like 3 (S. cerevisiae) [Mus musculus] >gi|73880... 73 3e-12
gb|AAD16076.1| (AF090210) recombination/repair protein RadA [unc... 73 3e-12
emb|CAC14294.1| (AJ296174) Rad51C protein [Arabidopsis thaliana] 73 4e-12
dbj|BAA25914.1| (AB013341) Trad [Homo sapiens] 72 5e-12
sp|O75771|R51D_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 4 (R51H3) ... 72 5e-12
pir||T43802 recombination/repair protein radA [imported] - Halob... 72 7e-12
gi|6320207 RecA homolog (similar to DMC1, RAD51, and RAD55), int... 72 7e-12
gb|AAD16075.1| (AF090209) recombination/repair protein RadA [unc... 71 9e-12
emb|CAC14091.1| (AJ299424) RAD51C protein [Arabidopsis thaliana] 71 1e-11
pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii ... 70 3e-11
gb|AAG34563.1| (AF321522) recombination/repair protein [Methanos... 68 8e-11
>pir||C75199 recombinase PAB2270 - Pyrococcus abyssi (strain Orsay)
>gi|5457551|emb|CAB49042.1| (AJ248283) Recombinase
[Pyrococcus abyssi]
Length = 239
Score = 474 bits (1207), Expect = e-133
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA 60
MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA
Sbjct: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA 60
Query: 61 YVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLV 120
YVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLV
Sbjct: 61 YVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLV 120
Query: 121 VVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHT 180
VVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHT
Sbjct: 121 VVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHT 180
Query: 181 LGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDVLKAKPENGEENI 239
LGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDVLKAKPENGEENI
Sbjct: 181 LGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDVLKAKPENGEENI 239
>sp|O57859|R51L_PYRHO PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|7429109|pir||E71232
probable DNA repair protein - Pyrococcus horikoshii
>gi|3256505|dbj|BAA29188.1| (AP000001) 228aa long
hypothetical DNA repair protein [Pyrococcus horikoshii]
Length = 228
Score = 408 bits (1037), Expect = e-113
Identities = 202/226 (89%), Positives = 216/226 (95%)
Query: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA 60
M+ SK E +GM LTTGVKGLDELLGGGVAR VILQVYGPFATGKTTFAMQVGLLNEGKVA
Sbjct: 1 MKGSKSEVQGMVLTTGVKGLDELLGGGVARRVILQVYGPFATGKTTFAMQVGLLNEGKVA 60
Query: 61 YVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLV 120
YVDTEGGFSPERL QMA SRGLDPEKALSKFIIFEPMDLNEQRR+ISKLKT+V +KFSLV
Sbjct: 61 YVDTEGGFSPERLAQMARSRGLDPEKALSKFIIFEPMDLNEQRRVISKLKTIVDEKFSLV 120
Query: 121 VVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHT 180
VVDSLTAHYRAEGS+++ ELAKQLQVLQWLAR+KNVAVIV+NQVY+DSN+N+LRPIAEHT
Sbjct: 121 VVDSLTAHYRAEGSKNYGELAKQLQVLQWLARRKNVAVIVINQVYHDSNSNSLRPIAEHT 180
Query: 181 LGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
LGYRTKDILRFEK RVGVRLAVLERHRFRPEGGIVYFKITDKG+ED
Sbjct: 181 LGYRTKDILRFEKLRVGVRLAVLERHRFRPEGGIVYFKITDKGLED 226
>pir||T43936 probable DNA repair protein [imported] - Pyrococcus furiosus
>gi|2967439|dbj|BAA25166.1| (D84670) ORF5 [Pyrococcus
furiosus] >gi|3560539|gb|AAC34999.1| (AF052598)
recombinase [Pyrococcus furiosus]
Length = 225
Score = 380 bits (965), Expect = e-105
Identities = 184/215 (85%), Positives = 205/215 (94%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVAYVDTEGGFSPER 72
LTTGVKGLDELLGGGVA+GVILQVYGPFATGKTTFAMQVGLLNEGKVAYVDTEGGFSPER
Sbjct: 7 LTTGVKGLDELLGGGVAKGVILQVYGPFATGKTTFAMQVGLLNEGKVAYVDTEGGFSPER 66
Query: 73 LKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHYRAE 132
L QMAESR LD EKAL KF+IFEPMDLNEQR++I++LK +V++KFSLVVVDS TAHYRAE
Sbjct: 67 LAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNEKFSLVVVDSFTAHYRAE 126
Query: 133 GSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGYRTKDILRFE 192
GSR++ EL+KQLQVLQW+AR+KNVAVIVVNQVYYDSN+ L+PIAEHTLGY+TKDILRFE
Sbjct: 127 GSREYGELSKQLQVLQWIARRKNVAVIVVNQVYYDSNSGILKPIAEHTLGYKTKDILRFE 186
Query: 193 KFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
+ RVGVR+AVLERHRFRPEGG+VYFKITDKG+EDV
Sbjct: 187 RLRVGVRIAVLERHRFRPEGGMVYFKITDKGLEDV 221
>pir||T46872 DNA repair protein rec [validated] - Pyrococcus sp
>gi|6009935|dbj|BAA11830.2| (D83176) Pk-rec [Pyrococcus
sp.]
Length = 220
Score = 289 bits (731), Expect = 3e-77
Identities = 143/218 (65%), Positives = 176/218 (80%), Gaps = 3/218 (1%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVAYVDTEGGFSPER 72
L+TG K LD LLGGG A GV+ QVYGP+A+GKTT A+Q GLL+ KVAYVDTEGGFSPER
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPER 61
Query: 73 LKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHYRAE 132
L QMAE+RGL+PE+ALS+FI+F P D EQRR+I LK V F+LVVVDS+TAHYRAE
Sbjct: 62 LVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121
Query: 133 GSRDHV--ELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGYRTKDILR 190
+R + EL++QLQVL W+ARK N+ VIV+NQV++DS T +P+AE TLGYR KDILR
Sbjct: 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181
Query: 191 FEKF-RVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
+K + G+R+AVLERHRFRPEG + YF+IT++GIEDV
Sbjct: 182 LDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV 219
>gb|AAG19917.1| (AE005075) DNA repair protein; RadA2 [Halobacterium sp. NRC-1]
Length = 236
Score = 155 bits (389), Expect = 3e-37
Identities = 94/224 (41%), Positives = 132/224 (57%), Gaps = 13/224 (5%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGGFS 69
L TG LDELLGGGV RG + Q+YGP A GKT A+ + G YVDTEG S
Sbjct: 8 LPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDTEG-LS 66
Query: 70 PERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHY 129
R +Q+ E+R DPE A + I+ + D +EQ + + +D+ L+VVDS+T Y
Sbjct: 67 LARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADF-ADRADLIVVDSVTGFY 125
Query: 130 R-AEGSRDHV-----ELAKQLQVLQWLARKKNVAVIVVNQVY--YDSNTNTLRPIAEHTL 181
R A G D ++A Q+ L LARK ++AV+V NQV+ D++++ RP+ HTL
Sbjct: 126 RLARGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVDNDSDRARPLGGHTL 185
Query: 182 GYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIE 225
+ T +LR ++FR G R A LE+HR +P+G F+ITD GI+
Sbjct: 186 AHWTGTVLRLDRFRGGTRRATLEKHRAKPDGEHAQFQITDGGID 229
>gb|AAC34998.1| (AF052597) recombinase [Pyrococcus furiosus]
Length = 349
Score = 127 bits (316), Expect = 1e-28
Identities = 90/253 (35%), Positives = 134/253 (52%), Gaps = 28/253 (11%)
Query: 1 MRASKYEAKGMTL---TTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGL 53
MRA +Y K T+ +TG K LD+LLGGG+ I +V+G F +GKT T A+ V L
Sbjct: 98 MRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 157
Query: 54 LNE-----GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISK 108
E G V ++DTE F PER++++A++RGLDP++ L + + N Q ++ +
Sbjct: 158 PPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 217
Query: 109 LKTVVSDKFS------LVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNV 156
+ + + + L++VDSLT+H+R+E + +LAK L L LA ++
Sbjct: 218 AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI 277
Query: 157 AVIVVNQVYYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGG 213
AV V NQV + + RPI H L + + K + G R+A L PEG
Sbjct: 278 AVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGE 337
Query: 214 IVYFKITDKGIED 226
V F IT+KGIED
Sbjct: 338 AV-FSITEKGIED 349
>pir||F75214 DNA repair protein rad51 (rada) PAB0164 - Pyrococcus abyssi
(strain Orsay) >gi|5457674|emb|CAB49165.1| (AJ248283)
DNA repair protein RAD51 (radA) [Pyrococcus abyssi]
Length = 356
Score = 125 bits (310), Expect = 6e-28
Identities = 93/253 (36%), Positives = 137/253 (53%), Gaps = 28/253 (11%)
Query: 1 MRASKYEAKGMTL---TTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGL 53
MRA +Y K ++ +TG K LD+LLGGG+ I +V+G F +GKT T A+ V L
Sbjct: 105 MRADEYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 164
Query: 54 LNE-----GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRII-- 106
E G V ++DTE F PER++++A++RGLDP++ L + + N Q ++
Sbjct: 165 PPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 224
Query: 107 --SKLKTVV-SDK-FSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNV 156
K+K ++ +DK L++VDSLT+H+R+E + +LAK L L LA +
Sbjct: 225 AEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEI 284
Query: 157 AVIVVNQVYYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGG 213
AV V NQV + + RPI H L + + K + G R+A L PEG
Sbjct: 285 AVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGE 344
Query: 214 IVYFKITDKGIED 226
V F+IT+KGIED
Sbjct: 345 AV-FRITEKGIED 356
>gi|11499679 DNA repair protein REC [Archaeoglobus fulgidus]
>gi|6225909|sp|O28184|R51L_ARCFU PROBABLE DNA REPAIR
PROTEIN RAD51-LIKE >gi|7429108|pir||H69511 DNA repair
protein REC homolog - Archaeoglobus fulgidus
>gi|2648436|gb|AAB89159.1| (AE000959) DNA repair protein
REC [Archaeoglobus fulgidus]
Length = 221
Score = 124 bits (309), Expect = 8e-28
Identities = 82/224 (36%), Positives = 122/224 (53%), Gaps = 16/224 (7%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV--GLLNEGKVAYVDTEGGF 68
M + TG K +D LLGGGV G + Q+YG TGKTT + + + KVAY+DTE G
Sbjct: 4 MLIPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKVAYIDTE-GL 62
Query: 69 SPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKL-KTVVSDKFSLVVVDSLTA 127
S ER++Q+ E+ S ++E +Q I + K S+K LV+VD T+
Sbjct: 63 SGERVRQI-----FGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTS 117
Query: 128 HYRAEGSRDHV------ELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTL 181
YR+E D EL QL L +ARK +VAV++ NQ++ D + RP+ +L
Sbjct: 118 LYRSELEDDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDRPLGGPSL 177
Query: 182 GYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIE 225
+ +K I+ E+ +R A L +HR+ EG +++ITD+GIE
Sbjct: 178 EHLSKVIIALERSN-ELRKATLIKHRWMKEGKSCFYRITDRGIE 220
>sp|Q57702|R51L_METJA PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|2127859|pir||G64331 DNA
repair protein RAD51 - Methanococcus jannaschii
>gi|1590984|gb|AAB98241.1| (U67480) DNA repair protein
REC [Methanococcus jannaschii]
Length = 212
Score = 122 bits (304), Expect = 3e-27
Identities = 82/215 (38%), Positives = 119/215 (55%), Gaps = 16/215 (7%)
Query: 20 LDELLGGGVARGVILQVYGPFATGKTTFAM--QVGLLNEGKVAYVDTEGGFSPERLKQMA 77
L E+L G +G+I Q+YGP GKT + + +N GKV Y+DTEGG S ER+KQ+A
Sbjct: 2 LKEILLGNAEKGIITQIYGPPGVGKTNICIINSINAVNSGKVIYIDTEGGLSIERIKQIA 61
Query: 78 ESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHYRAEGSRD- 136
+ + + L II+ D EQ +II K ++++ SL+VVD++T+ YR E S +
Sbjct: 62 SN---NYKIVLENMIIYNAFDFYEQDKIIQKELPLITNNASLIVVDNITSLYRLELSDEA 118
Query: 137 ------HVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGYRTKDILR 190
+ L Q++ L LA+ N+AVI+ NQV N L Y +K I+R
Sbjct: 119 NKNIMLNKMLGNQVKTLLKLAKTNNLAVIITNQV--RETVNGFEASGGRLLEYWSKCIVR 176
Query: 191 FEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIE 225
EK G RLA+LE+H E V F+I ++GIE
Sbjct: 177 LEKLN-GDRLAILEKHLHAGEER-VKFRIVERGIE 209
>pir||D72766 probable radA protein APE0119 - Aeropyrum pernix (strain K1)
>gi|5103509|dbj|BAA79030.1| (AP000058) 319aa long
hypothetical radA protein [Aeropyrum pernix]
Length = 319
Score = 122 bits (302), Expect = 5e-27
Identities = 87/236 (36%), Positives = 126/236 (52%), Gaps = 26/236 (11%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 63
+TTG + LDELLGGG+ I +++G F +GKT Q+ + EGK YVD
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVD 145
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVV-SDKFSLVVV 122
TEG F ER++QMA GLDP++ + ++ + Q I+ KL T+V +D LVVV
Sbjct: 146 TEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVV 205
Query: 123 DSLTAHYRAE-GSRDHVELAKQ-----LQVLQWLARKKNVAVIVVNQ------VYYDSNT 170
DS+T+H+RAE R+++ + +Q L L LA NVAV++ NQ V+Y T
Sbjct: 206 DSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPT 265
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ + H LG+ + +K R R+A + PEG V F IT+ GI D
Sbjct: 266 ---QAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPHLPEGETV-FAITEWGIRD 317
>dbj|BAA88984.1| (AB026115) RadA [Pyrobaculum islandicum]
Length = 315
Score = 120 bits (298), Expect = 2e-26
Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 20/233 (8%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
++TGV+ LDELLGGG+ + +V G F +GKT Q+ ++ + K Y+D
Sbjct: 84 ISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLAEERGGLGAKAIYID 143
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVV-SDKFSLVVV 122
TE F PER+ Q+A++RGLDP++AL+ + Q ++ + K+++ +L++V
Sbjct: 144 TENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVALLIV 203
Query: 123 DSLTAHYRAE-GSRDHV-----ELAKQLQVLQWLARKKNVAVIVVNQVYYDSNT---NTL 173
DS+ AH+R+E R+++ +L K + L LA +VAV++ NQV + N L
Sbjct: 204 DSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPL 263
Query: 174 RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
RP + L + L K + +R+A + + PEG V F+IT++G+ D
Sbjct: 264 RPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGE-VSFRITEEGLVD 315
>gb|AAD33955.1|AF145465_1 (AF145465) recombination/repair protein RadA [Desulfurococcus
amylolyticus]
Length = 328
Score = 118 bits (294), Expect = 4e-26
Identities = 87/238 (36%), Positives = 123/238 (51%), Gaps = 30/238 (12%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV----------GLLNEGKVAYV 62
+TTG K LDELLGGGV I + +G + +GKT Q+ G LN G+ Y+
Sbjct: 93 ITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLN-GRAVYI 151
Query: 63 DTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVV-SDKFSLVV 121
DTEG F ER++ MA + GLDP+K + + + Q I+ +L T V + LV+
Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211
Query: 122 VDSLTAHYRAE-GSRDHV-----ELAKQLQVLQWLARKKNVAVIVVNQV-------YYDS 168
+DS+T+H+RAE R+H+ +L L L LA NVAV+V NQV Y D
Sbjct: 212 LDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARPDVFYGDP 271
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
T + HT G R ++ K + R+A + PEG +V F IT++GI D
Sbjct: 272 TTAVGGHVLAHTPGVR----IQLRKSKGNKRIARVVDAPHLPEGEVV-FVITEEGIRD 324
>gi|6321027 meiosis-specific protein related to RecA and Rad51p. Dmc1p
colocalizes with Rad51p to discrete subnuclear sites in
nuclear spreads during mid prophase, briefly colocalizes
with Zip1p, and then disappears by pachytene; Dmc1p
[Saccharomyces cerevisiae]
>gi|118683|sp|P25453|DMC1_YEAST MEIOTIC RECOMBINATION
PROTEIN DMC1 >gi|419829|pir||A38214 meiosis-specific
recombination protein DMC1 [validated] - yeast
(Saccharomyces cerevisiae) >gi|171401|gb|AAA34571.1|
(M87549) Dmc1 [Saccharomyces cerevisiae]
>gi|287608|dbj|BAA01637.1| (D10865) ORF1 [Saccharomyces
cerevisiae] >gi|603420|gb|AAB64706.1| (U18922) Dmc1p:
DNA repair protein [Saccharomyces cerevisiae]
>gi|446776|prf||1912300A ISC2 gene [Saccharomyces
cerevisiae]
Length = 334
Score = 117 bits (291), Expect = 1e-25
Identities = 84/238 (35%), Positives = 121/238 (50%), Gaps = 24/238 (10%)
Query: 12 TLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYV 62
+L+TG K LD +LGGG+ I +V+G F GKT + + + EGKVAY+
Sbjct: 95 SLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYI 154
Query: 63 DTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKL-KTVVSDKFSLVV 121
DTEG F PER+KQ+AE LDPE L+ ++ Q ++ +L + + S + L+V
Sbjct: 155 DTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIV 214
Query: 122 VDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL-- 173
VDS+ A++ R E S +L + L L LA + NVAV + NQV D + L
Sbjct: 215 VDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFA 274
Query: 174 -----RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+PI H L + + + K R R+A L+ PE VY I +KGI D
Sbjct: 275 SADGRKPIGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEKECVYV-IGEKGITD 331
>emb|CAC12165.1| (AL445066) DNA repair protein RAD51 related protein [Thermoplasma
acidophilum]
Length = 245
Score = 115 bits (286), Expect = 4e-25
Identities = 75/221 (33%), Positives = 113/221 (50%), Gaps = 17/221 (7%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAM--QVGLLNEG-KVAYVDTEGGFS 69
+ TGV +D LL GG+ G+I +++G +GKT M +++G KV Y+D+EG S
Sbjct: 29 IQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAMSQGLKVIYIDSEG-LS 87
Query: 70 PERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS--DKFSLVVVDSLTA 127
PER + S +S F +F L++Q I K + K ++V+DS +
Sbjct: 88 PERFLAVCRSD-------ISMFKLFRVYSLDDQEVAIMKASKMADRDQKIGMIVLDSFSE 140
Query: 128 HYRAEGSRDH----VELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGY 183
+R E S D E +QL +L +A KKN+ V++ NQ+Y D + TL P + +
Sbjct: 141 FFRLEKSDDRQARIAEFQRQLSLLSSVAAKKNIPVLITNQIYQDIDNGTLLPFGGFLVDH 200
Query: 184 RTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGI 224
K ILR EK G R + +HR EG F+ITD G+
Sbjct: 201 AMKAILRIEKMPDGRRRITVTKHRSVREGVSAMFRITDDGV 241
>sp|O50248|R51L_METMP PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|2665476|gb|AAB88382.1|
(AF034787) DNA repair protein [Methanococcus
maripaludis]
Length = 216
Score = 113 bits (281), Expect = 1e-24
Identities = 72/221 (32%), Positives = 115/221 (51%), Gaps = 18/221 (8%)
Query: 20 LDELLGGGVARGVILQVYGPFATGKTT---FAMQVGLLNEGKVAYVDTEGGFSPERLKQM 76
L+ELL G + + I Q+YGP GKT +M + N V Y+DTEG S ER+KQ+
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQL 61
Query: 77 AESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHYRA----- 131
+ G D ++ L II+EP EQ + K+ + + L+++D + + YR
Sbjct: 62 S---GKDCDELLKNIIIYEPSSFEEQSEALEKI--FLLENVGLIIIDGIVSLYRLELCDK 116
Query: 132 --EGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGYRTKDIL 189
E ++ + L KQ+ L ++R+KN +++ NQV + N + P L Y +K I+
Sbjct: 117 INENTKLNRMLGKQISNLLKVSRQKNSGILITNQV--KDSINGIEPAGGRLLEYWSKSII 174
Query: 190 RFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDVLKA 230
+ EK +R LE+HR EG + FKI G+E + K+
Sbjct: 175 KIEKSE-SIRKLTLEKHRHAKEGENLRFKILQNGLEIINKS 214
>gi|6320942 RecA homolog; Rad51p colocalizes to ~ 65 spots with Dmc1p prior to
synapsis (independently of ZIP1 and DMC1), and interacts
with Rad52p and Rad55p; human Rad51p homolog interacts
with Brca2 protein which has been implicated in causing
breast cancer; Ra> >gi|131783|sp|P25454|RA51_YEAST DNA
REPAIR PROTEIN RAD51 >gi|322955|pir||A44348 RAD51
protein - yeast (Saccharomyces cerevisiae)
>gi|4275|emb|CAA45563.1| (X64270) similarities to
procaryotic RecA [Saccharomyces cerevisiae]
>gi|172339|gb|AAA34948.1| (M88470) RAD51 protein
[Saccharomyces cerevisiae] >gi|218469|dbj|BAA00913.1|
(D10023) Rad51 protein [Saccharomyces cerevisiae]
>gi|603333|gb|AAB64650.1| (U18839) Rad51p: RecA-like
protein [Saccharomyces cerevisiae]
Length = 400
Score = 113 bits (280), Expect = 2e-24
Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
LTTG K LD LLGGGV G I +++G F TGK+ + + EGK Y+D
Sbjct: 160 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F P RL +A+ GLDP+ AL+ + + Q R++ ++S+ +FSL+VV
Sbjct: 220 TEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVV 279
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYD------SNT 170
DS+ A Y R E S + LAK ++ LQ LA + VAV+V NQV N
Sbjct: 280 DSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L F+K + RL + PE V F I + G+ D
Sbjct: 340 DPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECV-FAIYEDGVGD 394
>sp|O27728|R51L_METTH PROBABLE DNA REPAIR PROTEIN RAD51-LIKE >gi|7429107|pir||D69093 DNA
repair protein Rad51 homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622824|gb|AAB86165.1| (AE000927) DNA repair protein
Rad51 homolog [Methanobacterium thermoautotrophicum]
Length = 234
Score = 112 bits (278), Expect = 3e-24
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 18/219 (8%)
Query: 20 LDELLGGGVARGVILQVYGPFATGKT--TFAMQVGLLNEGK-VAYVDTEGGFSPERLKQM 76
+D +LGGGV R I Q YGP +GKT T + V GK ++DTEGG S ER++Q+
Sbjct: 19 IDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTEGGLSVERIRQV 78
Query: 77 AESRGLDPEKALSKFIIFEPMDLNEQ----RRIISKLKTVVSDKFSLVVVDSLTAHYR-- 130
+ G ++ I+FEP EQ +R S LKT D LVV+DS A YR
Sbjct: 79 S---GDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKT-HGDSTDLVVLDSAVALYRLK 134
Query: 131 -AEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYY---DSNTNTLRPIAEHTLGYRTK 186
S +++L +Q+ +L +AR+ ++A ++ NQ+Y D + P+ L Y +K
Sbjct: 135 EGNASSFNLDLGRQMFLLLQMARRFDLAAVITNQIYSITGDDGREYVSPVGGTLLRYWSK 194
Query: 187 DILRFEK-FRVGVRLAVLERHRFRPEGGIVYFKITDKGI 224
++ E R G R AVL RHR R EG V F+I GI
Sbjct: 195 VMVELEMGERPGERFAVLRRHRNRLEGSRVGFRIVADGI 233
>sp|O27436|RADA_METTH RADA PROTEIN >gi|7448303|pir||A69051 DNA repair protein RadA -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622493|gb|AAB85860.1| (AE000901) DNA repair protein
RadA [Methanobacterium thermoautotrophicum]
Length = 311
Score = 111 bits (274), Expect = 1e-23
Identities = 80/237 (33%), Positives = 121/237 (50%), Gaps = 27/237 (11%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LDEL+GGG+ I +V+G F +GK+ + ++ + + + ++D
Sbjct: 79 ITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFID 138
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD--KFSLVV 121
TE F PER++Q+A + LD E+ L+K I + + Q + K+ ++ + LV+
Sbjct: 139 TENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQEGKNIRLVI 198
Query: 122 VDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQV------YYDSN 169
VDSLTAH+RAE + +L + L LQ +A N AV V NQV ++ S
Sbjct: 199 VDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAAVFVTNQVQARPDAFFGSP 258
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
T + I H LG+ + +K G R+A L PEG V FKIT GI D
Sbjct: 259 T---KAIGGHVLGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECV-FKITTAGIVD 311
>sp|O42634|DMC1_SCHPO MEIOTIC RECOMBINATION PROTEIN DMC1 >gi|11279454|pir||T51302 meiotic
recombination protein Dmc1 - fission yeast
(Schizosaccharomyces pombe) >gi|2696694|dbj|BAA23984.1|
(D64035) SpDmc1 [Schizosaccharomyces pombe]
Length = 336
Score = 110 bits (273), Expect = 1e-23
Identities = 79/250 (31%), Positives = 128/250 (50%), Gaps = 24/250 (9%)
Query: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN----- 55
M S+ K +++TG + L+ +LGGG+ I +V+G F GKT + + +
Sbjct: 87 MEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRD 146
Query: 56 ----EGKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT 111
EGKVA++DTEG F P+R+K +AE G+D ++A+ I+ + +Q I+KL T
Sbjct: 147 MGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGT 206
Query: 112 VVSD--KFSLVVVDSLTAHYRAE--GSRDHVELAKQLQV----LQWLARKKNVAVIVVNQ 163
+ ++ ++ L++VDS+ A +R + G + E K+L + L ++ + NVAV V NQ
Sbjct: 207 IFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQKKLNIMLARLNHISEEFNVAVFVTNQ 266
Query: 164 VYYDSN------TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYF 217
V D +N +P+ H + + + L K R R+A L PE Y
Sbjct: 267 VQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAECSYV 326
Query: 218 KITDKGIEDV 227
IT GI DV
Sbjct: 327 -ITPGGIADV 335
>pir||T39157 meiotic recombination protein - fission yeast (Schizosaccharomyces
pombe) >gi|2887332|emb|CAA17024.1| (AL021817) meiotic
recombination protein [Schizosaccharomyces pombe]
>gi|3176384|dbj|BAA28671.1| (AB008545) dmc1
[Schizosaccharomyces pombe]
Length = 332
Score = 109 bits (269), Expect = 4e-23
Identities = 78/250 (31%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN----- 55
M S+ K +++TG + L+ +LGGG+ I +V+G F GKT + + +
Sbjct: 83 MEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRD 142
Query: 56 ----EGKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT 111
EGKVA++DTEG F P+R+K +AE G+D ++A+ I+ + +Q I+KL T
Sbjct: 143 MGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGT 202
Query: 112 VVSD--KFSLVVVDSLTAHYRAE--GSRDHVELAKQLQV----LQWLARKKNVAVIVVNQ 163
+ ++ ++ L++VDS+ A +R + G + E ++L + L ++ + NVAV V NQ
Sbjct: 203 IFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIMLARLNHISEEFNVAVFVTNQ 262
Query: 164 VYYDSN------TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYF 217
V D +N +P+ H + + + L K R R+A L PE Y
Sbjct: 263 VQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAECSYV 322
Query: 218 KITDKGIEDV 227
IT GI DV
Sbjct: 323 -ITPGGIADV 331
>gi|11498598 DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus]
>gi|3914552|sp|O29269|RADA_ARCFU DNA REPAIR PROTEIN RADA
>gi|7448304|pir||A69374 DNA repair protein RAD51 (radA)
homolog - Archaeoglobus fulgidus
>gi|2649602|gb|AAB90248.1| (AE001035) DNA repair protein
RAD51 (radA) [Archaeoglobus fulgidus]
Length = 337
Score = 109 bits (269), Expect = 4e-23
Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 63
+TTG K LDELLGGGV I + +G F +GKT Q+ + EG V +D
Sbjct: 90 ITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIID 149
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD------KF 117
TE F PER+ QMAE++GLD + L + + + N Q ++ K +
Sbjct: 150 TENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPV 209
Query: 118 SLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNT- 170
L++VDSL +H+RAE + +L + L L N A++V NQV +
Sbjct: 210 RLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMARPDVL 269
Query: 171 --NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +P+ H + + + +K + +R+A L PEG + F++T++GIED
Sbjct: 270 FGDPTKPVGGHIVAHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAI-FRVTERGIED 326
>gb|AAC39117.1| (AF064516) Rad51 [Tetrahymena thermophila]
Length = 331
Score = 106 bits (263), Expect = 2e-22
Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+ LTTG LD+LLGGG G + +++G F TGKT + + EGK Y
Sbjct: 92 INLTTGSTELDKLLGGGFETGSLTEIFGEFRTGKTQICHTLCITCQLPKEKGGGEGKAMY 151
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F PERL+ +AE GLDP++ + + ++Q +++ + ++++ K++L+
Sbjct: 152 IDTEGTFRPERLESIAERFGLDPQECMENVAYARAFNCDQQNKLLVQAAALMAESKYALL 211
Query: 121 VVDSLTAHYRAEGS--------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNT 172
+VDS TA YR + S ++H L K L+ LQ LA + +AV++ NQV +
Sbjct: 212 IVDSATALYRTDYSGRGELSVRQNH--LGKFLRNLQRLADEFGIAVVITNQVMSQVDGAA 269
Query: 173 L------RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE +Y I GIED
Sbjct: 270 MFAGDMKKPIGGNIMAHASTTRLYLRKGRGESRICKIYDSPCLPESEAIY-AIGKGGIED 328
>dbj|BAA89533.1| (AB036801) LIM15/DMC1 homolog [Coprinus cinereus]
Length = 345
Score = 105 bits (260), Expect = 4e-22
Identities = 77/241 (31%), Positives = 119/241 (48%), Gaps = 25/241 (10%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAY 61
+ ++TG K +D +LGGGV I +VYG + TGKT A + ++ + GKVAY
Sbjct: 106 LVISTGSKLVDGILGGGVMSQSITEVYGEYRTGKTQLAHTMSVVAQLPPEYGGAAGKVAY 165
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDK-FSL 119
+DTEG F P+R++ +A+ G+D AL + + Q +I++ DK F L
Sbjct: 166 IDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSARFAEDKDFRL 225
Query: 120 VVVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNT--- 170
+++DS+ A + R E S +LA+ L L L+ + N+AV++ NQV D
Sbjct: 226 LIIDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSEEFNIAVLMTNQVQSDPGATMT 285
Query: 171 ----NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
L+PI H L + + + K R R+A L RPE Y K+ + G D
Sbjct: 286 FVAGGALKPIGGHILSHASATRIFLRKGRAEERVAKLVDSPDRPESEASY-KLDEGGWAD 344
Query: 227 V 227
V
Sbjct: 345 V 345
>gb|AAB53330.1| (U94993) Rad51 homolog [Bombyx mori]
Length = 338
Score = 104 bits (256), Expect = 1e-21
Identities = 77/241 (31%), Positives = 122/241 (49%), Gaps = 23/241 (9%)
Query: 8 AKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGK 58
A+ + LTTG K LD LLGGG+ G I +++G F TGKT + + EGK
Sbjct: 96 AEIIQLTTGSKELDRLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIEQSGGEGK 155
Query: 59 VAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KF 117
Y+DTEG F PERL +A+ G++ L + + Q +++ + ++++ ++
Sbjct: 156 CMYIDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYARAYNTDHQTQLLVQACAMMAESRY 215
Query: 118 SLVVVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQV--YYDS- 168
SL++VDS TA YR + S + L + +++L LA + VAVI+ NQV DS
Sbjct: 216 SLIIVDSATALYRTDYSGRGELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQVDSV 275
Query: 169 ---NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIE 225
N +T +PI H + + + L K R R+ + PE + F I+ +GI
Sbjct: 276 GVFNADTKKPIGGHIIAHASTTRLYLRKGRGDNRVCKIYDSPCLPETEAM-FAISAEGIT 334
Query: 226 D 226
D
Sbjct: 335 D 335
>sp|P36601|RA51_SCHPO DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|629906|pir||S42107 RAD51
protein homolog - fission yeast (Schizosaccharomyces
pombe) >gi|297522|emb|CAA80399.1| (Z22691) Rec A-like
Protein [Schizosaccharomyces pombe]
>gi|395378|emb|CAA80879.1| (Z24756) Rad51-like protein
[Schizosaccharomyces pombe]
Length = 365
Score = 103 bits (255), Expect = 2e-21
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+T+TTG K LD LL GGV G I +++G F TGK+ + + EGK Y
Sbjct: 122 ITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 181
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL+ E+ L + + Q ++ + ++S+ +FSL+
Sbjct: 182 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 241
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVY-----YDSN 169
VVDS TA Y R E S + LA+ ++ LQ LA + +AV++ NQV N
Sbjct: 242 VVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQVDGISFN 301
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + L + + L K R R+ + PE + F I G+ D
Sbjct: 302 PDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI-FAINSDGVGD 357
>emb|CAA80878.1| (Z24756) RecA-like protein [Schizosaccharomyces pombe]
Length = 358
Score = 103 bits (255), Expect = 2e-21
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+T+TTG K LD LL GGV G I +++G F TGK+ + + EGK Y
Sbjct: 115 ITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 174
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL+ E+ L + + Q ++ + ++S+ +FSL+
Sbjct: 175 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 234
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVY-----YDSN 169
VVDS TA Y R E S + LA+ ++ LQ LA + +AV++ NQV N
Sbjct: 235 VVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQVDGISFN 294
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + L + + L K R R+ + PE + F I G+ D
Sbjct: 295 PDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI-FAINSDGVGD 350
>pir||S37672 RAD51 protein - fission yeast (Schizosaccharomyces pombe)
>gi|397843|dbj|BAA02963.1| (D13805) SpRad51
[Schizosaccharomyces pombe] >gi|7708593|emb|CAB90141.1|
(AL355012) dna repair protein rad51 homolog
[Schizosaccharomyces pombe]
Length = 365
Score = 103 bits (255), Expect = 2e-21
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+T+TTG K LD LL GGV G I +++G F TGK+ + + EGK Y
Sbjct: 122 ITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 181
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL+ E+ L + + Q ++ + ++S+ +FSL+
Sbjct: 182 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 241
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVY-----YDSN 169
VVDS TA Y R E S + LA+ ++ LQ LA + +AV++ NQV N
Sbjct: 242 VVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQVDGISFN 301
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + L + + L K R R+ + PE + F I G+ D
Sbjct: 302 PDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI-FAINSDGVGD 357
>sp|Q96449|DMC1_SOYBN MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|7448302|pir||T08838
RecA/Rad51/DMC1-like protein - soybean
>gi|1518157|gb|AAB07025.1| (U66836) RecA/Rad51/DMC1-like
protein [Glycine max]
Length = 345
Score = 103 bits (255), Expect = 2e-21
Identities = 79/235 (33%), Positives = 114/235 (47%), Gaps = 22/235 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + LDELLGGGV I + +G F +GKT A + + + GKVAY+D
Sbjct: 109 ITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYID 168
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK-FSLVVV 122
TEG F P+R+ +AE G+DP L I Q ++ L +S++ F L++V
Sbjct: 169 TEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIV 228
Query: 123 DSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-----TN 171
DS+ A +R + S +LA+ L L +A + NVAV + NQV D T+
Sbjct: 229 DSVIALFRVDFSGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFVTD 288
Query: 172 TLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+P H L + L F K + R+ + PE V F+IT GI D
Sbjct: 289 PKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPEAEAV-FQITAGGIAD 342
>gb|AAC16335.1| (AF062380) Dmc1 homolog [Leishmania major]
Length = 364
Score = 102 bits (253), Expect = 3e-21
Identities = 77/243 (31%), Positives = 120/243 (48%), Gaps = 26/243 (10%)
Query: 11 MTLTTGVKGLDELLGGG-VARGVILQVYGPFATGKTTFA----------MQVGLLNEGKV 59
+ ++TG LD+LLGGG + I + +G F TGKT +++G N GK
Sbjct: 124 LRISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGN-GKA 182
Query: 60 AYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFS 118
YVDTEG F PER++ +AE G+D L ++ Q ++S + + D+FS
Sbjct: 183 VYVDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFS 242
Query: 119 LVVVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNT 172
L+VVDS+TA +R + S +LAK L L +A + N+AV + NQV D +
Sbjct: 243 LLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGAS 302
Query: 173 L------RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +P+ H L + + L K R R+ + PE VY I+++GI D
Sbjct: 303 MFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSLPELECVY-SISEQGIID 361
Query: 227 VLK 229
++
Sbjct: 362 AVE 364
>gb|AAC23703.1| (U21905) Rah1 [Coprinus cinereus]
Length = 343
Score = 102 bits (253), Expect = 3e-21
Identities = 76/237 (32%), Positives = 113/237 (47%), Gaps = 24/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD LLGGG+ G I +++G F TGK+ + + EGK Y+D
Sbjct: 103 ITTGSKQLDALLGGGIETGAITELFGEFRTGKSQICHTLAVTCQLPVSMGGGEGKCLYID 162
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F P RL +AE GL+ E+ L + + Q+ +++ ++S+ +F L++V
Sbjct: 163 TEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQQALLTSASALMSESRFCLLIV 222
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNT------ 170
DS TA Y R E S L K L+ LQ LA + +AV+V NQV +
Sbjct: 223 DSCTALYRTDFSGRGELSSRQTHLGKFLRTLQRLADEFGIAVVVTNQVMSTPDAAPGPYA 282
Query: 171 -NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
N +PI + + + + L+ +K R R + PE F I GI D
Sbjct: 283 GNEKKPIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESETT-FAILPGGIGD 338
>dbj|BAA92869.1| (AB040404) Pprad51 [Penicillium paxilli]
Length = 347
Score = 102 bits (253), Expect = 3e-21
Identities = 76/240 (31%), Positives = 118/240 (48%), Gaps = 25/240 (10%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+++TTG K LD LLGGG+ G I +++G F TGK+ + + EGK Y
Sbjct: 101 ISITTGSKRLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL E+ L + + Q +++++ ++ + +FSL+
Sbjct: 161 IDTEGTFRPVRLLAVAQRFGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYD------- 167
+VDS TA Y R E S LAK L+ LQ LA + VAV++ NQV
Sbjct: 221 IVDSATALYRTDFNGRGELSSRQTHLAKFLRTLQRLADEFGVAVVITNQVVAQVDGGPSA 280
Query: 168 -SNTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
N + +PI + + + + L +K R R+ + PE + F I + GI D
Sbjct: 281 MFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCL-FAINEDGIGD 339
>gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus]
Length = 324
Score = 102 bits (252), Expect = 4e-21
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 27/237 (11%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
++TG + LD LL GG+ + + +G F +GKT Q+ + + GK Y+D
Sbjct: 89 ISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS--DKFSLVV 121
TEG F ER++ MA++ GLD + ++ ++ + Q I+ L+ +VS L+V
Sbjct: 149 TEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIV 208
Query: 122 VDSLTAHYRAE-GSRDHV-----ELAKQLQVLQWLARKKNVAVIVVNQV------YYDSN 169
VDS+T+H+RAE R+++ +L K L L LA ++AVI+ NQV +Y
Sbjct: 209 VDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDP 268
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
T + HTL + ++ +K R R+A + PEG +V F +T++GI D
Sbjct: 269 TVA---VGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVV-FALTEEGIRD 321
>pir||S36159 RAD51 protein homolog - fission yeast (Schizosaccharomyces pombe)
Length = 365
Score = 102 bits (252), Expect = 4e-21
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+T+TTG K LD LL GGV G I +++G F TGK+ + + EGK Y
Sbjct: 122 ITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 181
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL+ E+ L + + Q ++ + ++S+ +FSL+
Sbjct: 182 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 241
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVY-----YDSN 169
VVDS TA Y R E S + LA+ ++ +Q LA + +AV++ NQV N
Sbjct: 242 VVDSCTALYRTDFSGRGELSARQMHLARFMRTVQRLADEFGIAVVITNQVVAQVDGISFN 301
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + L + + L K R R+ + PE + F I G+ D
Sbjct: 302 PDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAI-FAINSDGVGD 357
>gb|AAF42940.1|AF234170_1 (AF234170) DMC1 protein [Hordeum vulgare]
Length = 344
Score = 102 bits (252), Expect = 4e-21
Identities = 77/236 (32%), Positives = 114/236 (47%), Gaps = 22/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + LDELLGGG+ I + +G F +GKT A + + + GKVAY+D
Sbjct: 108 ITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYID 167
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK-FSLVVV 122
TEG F PER+ +AE G+D L I Q ++ L ++++ F L++V
Sbjct: 168 TEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIV 227
Query: 123 DSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-----TN 171
DS+ A +R + S +LA+ L L +A + NVAV + NQV D T+
Sbjct: 228 DSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITD 287
Query: 172 TLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
+P H L + L K + R+ + PEG V F+IT G+ DV
Sbjct: 288 PKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAV-FQITTGGLADV 342
>sp|Q55075|RADA_SULSO DNA REPAIR PROTEIN RADA >gi|2129447|pir||S71093 radA protein -
Sulfolobus solfataricus >gi|1378036|gb|AAC44123.1|
(U45310) RadA [Sulfolobus solfataricus]
Length = 324
Score = 102 bits (251), Expect = 5e-21
Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 27/237 (11%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
++TG + LD LL GG+ + + +G F +GKT Q+ + + GK Y+D
Sbjct: 89 ISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS--DKFSLVV 121
TEG F ER++ MA++ GLD + ++ ++ + Q I+ L+ +VS L+V
Sbjct: 149 TEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIV 208
Query: 122 VDSLTAHYRAEGSRDHV------ELAKQLQVLQWLARKKNVAVIVVNQV------YYDSN 169
VDS+T+H+RAE + +L K L L LA ++AVI+ NQV +Y
Sbjct: 209 VDSVTSHFRAEYPGREILAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDP 268
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
T + HTL + ++ +K R R+A + PEG +V F +T++GI D
Sbjct: 269 TVA---VGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVV-FALTEEGIRD 321
>sp|Q99133|RA51_USTMA DNA REPAIR PROTEIN RAD51 >gi|1480734|gb|AAC61878.1| (U62484) Rad51
[Ustilago maydis]
Length = 339
Score = 101 bits (250), Expect = 6e-21
Identities = 76/238 (31%), Positives = 118/238 (48%), Gaps = 23/238 (9%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+++TTG K LD +LGGG+ G I ++YG F TGK+ + + EGK Y
Sbjct: 100 ISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLY 159
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTE F P RL +AE GL+ E+ L + + Q +++ + ++++ +FSL+
Sbjct: 160 IDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLL 219
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL- 173
+VDSLT+ Y R E S + LAK L+ L LA + VAV++ NQV + T
Sbjct: 220 IVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQVDGATAF 279
Query: 174 -----RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+PI + + + + L K R R+ + PE V F I +GI D
Sbjct: 280 TADAKKPIGGNIVAHASTTRLSLRKGRGNQRICRIADSPCLPEADAV-FAIGPEGIID 336
>emb|CAB02454.1| (Z80341) uvsC [Aspergillus nidulellus]
Length = 348
Score = 101 bits (250), Expect = 6e-21
Identities = 76/248 (30%), Positives = 120/248 (47%), Gaps = 25/248 (10%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+++TTG K LD LLGGG+ G I +++G F TGK+ + + EGK Y
Sbjct: 101 ISITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL E+ L + + Q +++++ ++ + +FSL+
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYD------- 167
VVDS T+ Y R E S LAK ++ LQ LA + +AV++ NQV
Sbjct: 221 VVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSA 280
Query: 168 -SNTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
N + +PI + + + + L +K R R+ + PE + F I + GI D
Sbjct: 281 MFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCL-FAINEDGIGD 339
Query: 227 VLKAKPEN 234
EN
Sbjct: 340 PSPKDLEN 347
>gb|AAB39323.2| (U63728) ARECA [Aspergillus nidulans]
Length = 344
Score = 101 bits (250), Expect = 6e-21
Identities = 76/248 (30%), Positives = 120/248 (47%), Gaps = 25/248 (10%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+++TTG K LD LLGGG+ G I +++G F TGK+ + + EGK Y
Sbjct: 97 ISITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 156
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A+ GL E+ L + + Q +++++ ++ + +FSL+
Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYD------- 167
VVDS T+ Y R E S LAK ++ LQ LA + +AV++ NQV
Sbjct: 217 VVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSA 276
Query: 168 -SNTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
N + +PI + + + + L +K R R+ + PE + F I + GI D
Sbjct: 277 MFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCL-FAINEDGIGD 335
Query: 227 VLKAKPEN 234
EN
Sbjct: 336 PSPKDLEN 343
>gb|AAC16334.1| (AF062379) Rad51 homolog [Leishmania major]
Length = 377
Score = 101 bits (249), Expect = 8e-21
Identities = 73/237 (30%), Positives = 118/237 (48%), Gaps = 24/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG + +D+LLGGG+ G I +++G F TGKT + + EG Y+D
Sbjct: 139 VTTGSREVDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGGAEGMALYID 198
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F PERL +AE LDPE L+ + + Q++++ + ++++ +F+L++V
Sbjct: 199 TEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMAENRFALIIV 258
Query: 123 DSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------- 169
DS TA YR + S + L K L+ L LA + VAV+V NQV + +
Sbjct: 259 DSATALYRTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVANVDGSAQMFQ 318
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
++ +PI H + + + L K R R+ + E + F I D G+ D
Sbjct: 319 ADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAEAEAI-FGIYDDGVGD 374
>emb|CAA73605.1| (Y13144) Rad51 homologue [Trypanosoma brucei]
Length = 313
Score = 101 bits (248), Expect = 1e-20
Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 24/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG + +D+LLGGG+ G I +++G F TGKT + + EG Y+D
Sbjct: 75 VTTGSREVDKLLGGGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQGGGEGMALYID 134
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLK-TVVSDKFSLVVV 122
TEG F PERL +AE LDPE L + + Q++++ + T+ + +++VV
Sbjct: 135 TEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATMAEHRVAIIVV 194
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------- 169
DS TA Y R E + + L K L+ L+ LA + NVAV+V NQV + +
Sbjct: 195 DSATALYRTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVVANVDGAAPTFQ 254
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
++ +PI H + + + L K R R+ + E + F I + G+ DV
Sbjct: 255 ADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAI-FGIYENGVGDV 311
>gb|AAD51713.1|AF174136_1 (AF174136) RAD51 [Trypanosoma brucei]
Length = 373
Score = 101 bits (248), Expect = 1e-20
Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 24/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG + +D+LLGGG+ G I +++G F TGKT + + EG Y+D
Sbjct: 135 VTTGSREVDKLLGGGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQGGGEGMALYID 194
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLK-TVVSDKFSLVVV 122
TEG F PERL +AE LDPE L + + Q++++ + T+ + +++VV
Sbjct: 195 TEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATMAEHRVAIIVV 254
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------- 169
DS TA Y R E + + L K L+ L+ LA + NVAV+V NQV + +
Sbjct: 255 DSATALYRTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVVANVDGAAPTFQ 314
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
++ +PI H + + + L K R R+ + E + F I + G+ DV
Sbjct: 315 ADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAI-FGIYENGVGDV 371
>sp|P50265|DLH1_CANAL MEIOTIC RECOMBINATION PROTEIN DLH1 (DMC1 HOMOLOG)
>gi|2131137|pir||S70390 DMC1/LIM15 homolog 1 - yeast
(Candida albicans) >gi|1145716|gb|AAC49400.1| (U39808)
Dlh1p [Candida albicans]
Length = 324
Score = 100 bits (247), Expect = 1e-20
Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 24/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K DE+LGGG+ I +V+G F GKT + + EG+VAY+D
Sbjct: 87 ITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYID 146
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F P+R++ +AE G+D + L ++ Q ++ +L +++ F L++V
Sbjct: 147 TEGTFRPDRIRSIAERYGVDADICLENISYARALNSEHQIELVEQLGNELAEGTFRLLIV 206
Query: 123 DSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL--- 173
DS+ A +R + S +L + L L +A N+AV + NQV D + L
Sbjct: 207 DSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASALFAA 266
Query: 174 ----RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+P+ H L + + + K R R+A L+ PE VY I + GI+D
Sbjct: 267 ADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECVYV-IGEGGIKD 322
>pir||S70629 Rad51 homolog mei-3 - Neurospora crassa >gi|2182133|dbj|BAA20366.1|
(D29638) MEI3 [Neurospora crassa]
Length = 353
Score = 100 bits (247), Expect = 1e-20
Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAY 61
+++TTG K LD LL GG+ G + +++G F TGK+ + + EGK Y
Sbjct: 104 ISITTGSKNLDTLLAGGIETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 163
Query: 62 VDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLV 120
+DTEG F P RL +A GL E+ L + + Q +++++ ++ + +FSL+
Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223
Query: 121 VVDSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYD------- 167
+VDS T+ Y R E S LAK ++ LQ LA + +AV++ NQV
Sbjct: 224 IVDSATSLYRTDFLGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSA 283
Query: 168 -SNTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
N + +PI + + + + + +K R R+A + PE + F I + GI D
Sbjct: 284 MFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCL-FAINEDGIGD 342
>gb|AAD16063.1| (AF090197) recombination/repair protein RadA [Cenarchaeum
symbiosum]
Length = 369
Score = 100 bits (246), Expect = 2e-20
Identities = 68/234 (29%), Positives = 117/234 (49%), Gaps = 22/234 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG LD LLGGG+ I +V+G F +GKT F + + + G V Y+D
Sbjct: 60 ITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYID 119
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKL-KTVVSDKFSLVVV 122
TEG F PER+ +A++ +DP K L I+ + + Q I+ + KT+ + L++
Sbjct: 120 TEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKLIIS 179
Query: 123 DSLTAHYRAE-------GSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNT---NT 172
DS T +R+E SR +L + +++L +A N AV+ NQV ++ +
Sbjct: 180 DSTTGLFRSEYLGRGTLASRQQ-KLGRYIRLLARIAETYNCAVLATNQVSSSPDSFFGDP 238
Query: 173 LRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
RP+ + +G+ + + F K R+A + P V F++ ++G++D
Sbjct: 239 TRPVGGNVVGHASTYRIYFRKGGKNKRVAKIIDSPHHPASEAV-FELGERGVQD 291
>sp|Q49593|RADA_METJA DNA REPAIR PROTEIN RADA >gi|2127856|pir||E64408 DNA repair protein
radA - Methanococcus jannaschii >gi|2146708|pir||S71096
radA protein - Methanococcus jannaschii
>gi|1378034|gb|AAC44122.1| (U45312) RadA [Methanococcus
jannaschii] >gi|1591553|gb|AAB98875.1| (U67531) DNA
repair protein RAD51 (radA) [Methanococcus jannaschii]
Length = 352
Score = 99.1 bits (243), Expect = 4e-20
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 30/243 (12%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV------------------GLL 54
L+TG K LDE+LGGG+ + + G F +GKT A Q +L
Sbjct: 111 LSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEIL 170
Query: 55 NEGKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS 114
NE K Y+DTEG F PER+ QMAE+ GLD + L+ + + + Q ++ ++
Sbjct: 171 NEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIR 230
Query: 115 D--KFSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQVYY 166
+ LV+VDSLT+ +R E + +L + + L LA N VIV NQV
Sbjct: 231 EGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQVAA 290
Query: 167 DSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKG 223
+ + + I H +G+ + K + R+A L P+ + F+IT+KG
Sbjct: 291 RPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAEAM-FRITEKG 349
Query: 224 IED 226
I D
Sbjct: 350 IHD 352
>pir||S71095 radA protein - Methanococcus jannaschii
Length = 320
Score = 99.1 bits (243), Expect = 4e-20
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 30/243 (12%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV------------------GLL 54
L+TG K LDE+LGGG+ + + G F +GKT A Q +L
Sbjct: 79 LSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEIL 138
Query: 55 NEGKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS 114
NE K Y+DTEG F PER+ QMAE+ GLD + L+ + + + Q ++ ++
Sbjct: 139 NEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIR 198
Query: 115 D--KFSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQVYY 166
+ LV+VDSLT+ +R E + +L + + L LA N VIV NQV
Sbjct: 199 EGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQVAA 258
Query: 167 DSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKG 223
+ + + I H +G+ + K + R+A L P+ + F+IT+KG
Sbjct: 259 RPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAEAM-FRITEKG 317
Query: 224 IED 226
I D
Sbjct: 318 IHD 320
>emb|CAC12231.1| (AL445066) probable DNA repair protein Rad51 (RadA) [Thermoplasma
acidophilum]
Length = 323
Score = 99.1 bits (243), Expect = 4e-20
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 20/233 (8%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
LTTG K LD+LLGGG+ I + +G F +GKT Q+ + + V +D
Sbjct: 90 LTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDVMMID 149
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TE F PER+ QMA+S+G DP++ L + + + + Q + K + + L++V
Sbjct: 150 TENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIKLLIV 209
Query: 123 DSLTAHYRAE--GSRDHVE----LAKQLQVLQWLARKKNVAVIVVNQVYYDSNT---NTL 173
DSLTAH+R+E G E L K + L N + V NQV + + +
Sbjct: 210 DSLTAHFRSEYVGRGSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQVSARPDVFFGDPM 269
Query: 174 RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
PI + +G+ + K + G R+A L + PEG V +I+++G+ D
Sbjct: 270 APIGGNIVGHTATFRIYLRKSKGGKRIARLIDSPYLPEGETV-IQISEEGVSD 321
>sp|Q39009|DMC1_ARATH MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|1076395|pir||JC4092
DMC1/LIM15 homolog - Arabidopsis thaliana
>gi|871832|dbj|BAA08255.1| (D45415) recA-like protein
[Arabidopsis thaliana]
Length = 342
Score = 98.7 bits (242), Expect = 6e-20
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + LD+LLGGG+ I + +G F +GKT A + + + GKVAY+D
Sbjct: 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYID 167
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK-FSLVVV 122
TEG F P+R+ +AE G+DP L I Q ++ L +S++ F +++V
Sbjct: 168 TEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIV 227
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-----TN 171
DS+ A + R E + +LA+ L L +A + NVAV + NQV D ++
Sbjct: 228 DSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISD 287
Query: 172 TLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+P H L + L F K + R+ + P F+IT GI D
Sbjct: 288 PKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYD---APNLAEASFQITQGGIAD 339
>gb|AAB37762.1| (U43528) RAD51 homolog AtRad51 [Arabidopsis thaliana]
>gi|1706949|gb|AAC49555.1| (U43652) AtRAD51 [Arabidopsis
thaliana] >gi|2388778|emb|CAA04529.1| (AJ001100)
Rad51-like protein [Arabidopsis thaliana]
Length = 342
Score = 98.7 bits (242), Expect = 6e-20
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+T+G + LD++L GG+ G I ++YG F +GKT + + EGK Y+D
Sbjct: 105 ITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYID 164
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
EG F P+RL Q+A+ GL+ L + + Q R++ + + ++ +F+L++V
Sbjct: 165 AEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIV 224
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL--- 173
DS TA Y R E S + LAK L+ LQ LA + VAV++ NQV + + L
Sbjct: 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAG 284
Query: 174 ---RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+PI + + + T L K R R+ + PE F+I+ +G+ D
Sbjct: 285 PQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPEAE-ARFQISTEGVTD 339
>gb|AAF74403.1|AF198107_3 (AF198107) DNA repair protein RAD51 [Giardia intestinalis]
Length = 236
Score = 98.7 bits (242), Expect = 6e-20
Identities = 78/234 (33%), Positives = 113/234 (47%), Gaps = 23/234 (9%)
Query: 15 TGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVDTE 65
+G + LLGGGV I +V+G F TGKT + + + GK Y+DTE
Sbjct: 1 SGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTE 60
Query: 66 GGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKL-KTVVSDKFSLVVVDS 124
G F PE++ +AE GL+P+KAL ++ +Q I+ L K +V ++FSLV+VDS
Sbjct: 61 GTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVIVDS 120
Query: 125 LTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------TNT 172
LTA + R E + +L + L L LA + N+AV V NQV + +
Sbjct: 121 LTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQVDGAAMFTADP 180
Query: 173 LRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+PI H L + + L K R R+A + EG Y I +GI D
Sbjct: 181 KKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASY-SIAAEGIID 233
>pir||T37305 rad51 protein, short isoform - Caenorhabditis elegans
>gi|2913897|dbj|BAA24982.1| (AB011382)
RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
>gi|3786402|gb|AAD10194.1| (AF061201) RAD51 short
isoform [Caenorhabditis elegans]
>gi|6434484|emb|CAB61038.1| (AL023838) predicted using
Genefinder~contains similarity to Pfam domain: PF00633
(Helix-hairpin-helix motif.), Score=30.1,
E-value=1.7e-05, N=1~cDNA EST CEMSE47F comes from this
gene~cDNA EST yk241d12.3 comes from this gene~cDNA EST
yk401c3.3 comes fr>
Length = 357
Score = 97.5 bits (239), Expect = 1e-19
Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 24/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+ TG LD LLGGG+ G I +VYG + TGKT + +L EGK Y+D
Sbjct: 118 IRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYID 177
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
T F PER+ +A+ +D L + + +I + ++S+ ++++V+V
Sbjct: 178 TNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 237
Query: 123 DSLTAHYRAE--GSRD----HVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------- 169
D TAH+R E G D ++L+ L+ L LA + VAVI+ NQV +
Sbjct: 238 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 297
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H + + + L K + R+A + + PE Y IT+ GIED
Sbjct: 298 ADAKKPIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAEATY-SITNHGIED 353
>pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
Length = 391
Score = 97.5 bits (239), Expect = 1e-19
Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 24/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+ TG LD LLGGG+ G I +VYG + TGKT + +L EGK Y+D
Sbjct: 152 IRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYID 211
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
T F PER+ +A+ +D L + + +I + ++S+ ++++V+V
Sbjct: 212 TNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 271
Query: 123 DSLTAHYRAE--GSRD----HVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------- 169
D TAH+R E G D ++L+ L+ L LA + VAVI+ NQV +
Sbjct: 272 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 331
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H + + + L K + R+A + + PE Y IT+ GIED
Sbjct: 332 ADAKKPIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAEATY-SITNHGIED 387
>gb|AAC49617.1| (U76670) AtDMC1 [Arabidopsis thaliana]
Length = 344
Score = 97.1 bits (238), Expect = 2e-19
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + LD+LLGGG+ I + +G F +GKT A + + + GKVAY+D
Sbjct: 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYID 167
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK-FSLVVV 122
TEG F P+R+ +AE G+DP L I Q ++ L +S++ F +++V
Sbjct: 168 TEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIV 227
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-----TN 171
DS+ A + R E + +LA+ L L +A + NVAV + NQV D ++
Sbjct: 228 DSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISD 287
Query: 172 TLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+P H L + L F K + R+ + E F+IT GI D
Sbjct: 288 PKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAE-ASFQITQGGIAD 341
>sp|P37384|DMC1_LILLO MEIOTIC RECOMBINATION PROTEIN DMC1 HOMOLOG >gi|629874|pir||JC2214
hypothetical 38.3K protein, LIM15 - trumpet lily
>gi|431168|dbj|BAA04845.1| (D21821) RAD51-like protein
[Lilium longiflorum]
Length = 349
Score = 96.7 bits (237), Expect = 2e-19
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + LDELLGGG+ I + +G F +GKT A + + + GKVAY+D
Sbjct: 113 ITTGSQALDELLGGGIETLQITEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYID 172
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK-FSLVVV 122
TEG F P+R+ +AE G+D L I Q ++ L +S++ F L++V
Sbjct: 173 TEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLLIV 232
Query: 123 DSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-----TN 171
DS+ A +R + S +LA+ L L +A + NVAV + NQV D ++
Sbjct: 233 DSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISD 292
Query: 172 TLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+P H L + L K + R+ + PE V F+IT G+ D
Sbjct: 293 PKKPAGGHVLAHAATVRLMLRKGKGEQRVCKIFDAPNLPESEAV-FQITPGGVAD 346
>sp|Q40134|RA51_LYCES DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|7448301|pir||T06365 RAD51
protein homolog - tomato >gi|1143810|gb|AAC23700.1|
(U22441) LeRAD51 [Lycopersicon esculentum]
Length = 342
Score = 96.7 bits (237), Expect = 2e-19
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+T+G K LD++L GG+ G I ++YG F GKT + + EGK Y+D
Sbjct: 105 ITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
EG F P+RL Q+A+ GL+ L + + Q R++ + + +V +F+L++V
Sbjct: 165 AEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIV 224
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNT---- 172
DS TA Y R E S + LAK L+ LQ LA + VAV++ NQV + +
Sbjct: 225 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAG 284
Query: 173 --LRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
++PI + + + + L K R R+ + E F+I+ +G+ DV
Sbjct: 285 PQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAEAE-ARFQISVEGVTDV 340
>sp|Q06609|RA51_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|2136077|pir||I58295 RAD51
protein homolog - human >gi|285977|dbj|BAA03189.1|
(D14134) RAD51 [Homo sapiens] >gi|5733658|gb|AAD49705.1|
(AF165094) Rad51 [Homo sapiens]
>gi|7767554|gb|AAF69145.1| (AF233744) RAD51 [Homo
sapiens]
Length = 339
Score = 96.0 bits (235), Expect = 4e-19
Identities = 72/236 (30%), Positives = 112/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 336
>gi|4506389 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [Homo sapiens]
>gi|397827|dbj|BAA02962.1| (D13804) HsRad51 [Homo
sapiens]
Length = 339
Score = 96.0 bits (235), Expect = 4e-19
Identities = 72/236 (30%), Positives = 112/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICQIYDSPCLPEAEAM-FAINADGVGD 336
>dbj|BAA78377.1| (AB020740) Rad51 [Cynops pyrrhogaster]
Length = 337
Score = 96.0 bits (235), Expect = 4e-19
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 100 VTTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYID 159
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + ++++ +++L++V
Sbjct: 160 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIV 219
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 220 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 279
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 280 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINPDGVGD 334
>gi|11431556 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) [Homo sapiens]
Length = 408
Score = 96.0 bits (235), Expect = 4e-19
Identities = 72/236 (30%), Positives = 112/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 171 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 230
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 231 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIV 290
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 291 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 350
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 351 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 405
>sp|P37383|RA51_CHICK DNA REPAIR PROTEIN RAD51 HOMOLOG >gi|479915|pir||S35642 RAD51
protein homolog - chicken >gi|299819|gb|AAB26354.1|
(S59426) Rad51 homolog [chickens, Peptide, 339 aa]
[Gallus gallus]
Length = 339
Score = 95.6 bits (234), Expect = 5e-19
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + ++++ +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 336
>gi|6755276 Rad51 homolog (S. cerevisiae) [Mus musculus]
>gi|585772|sp|Q08297|RA51_MOUSE DNA REPAIR PROTEIN RAD51
HOMOLOG 1 >gi|477153|pir||A48221 RAD51 protein homolog -
mouse >gi|397831|dbj|BAA02961.1| (D13803) MmRad51 [Mus
musculus] >gi|407349|dbj|BAA02718.1| (D13473) Rad51
protein [Mus musculus] >gi|1093114|prf||2102359A
RAD51-like protein [Mus musculus]
Length = 339
Score = 95.6 bits (234), Expect = 5e-19
Identities = 72/236 (30%), Positives = 112/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 336
>gb|AAD32030.1|AF079429_1 (AF079429) RAD51 homolog RAD51B [Zea mays]
Length = 340
Score = 95.6 bits (234), Expect = 5e-19
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
LTTG + LD++L GG+ G I ++YG F +GKT + + EGK Y+D
Sbjct: 103 LTTGSRELDQILDGGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYID 162
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
EG F P+R+ Q+A+ GL+ L + + Q R++ + + +V +F+L+VV
Sbjct: 163 AEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMVV 222
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNT---- 172
DS TA Y R E S + LAK L+ LQ LA + VAV++ NQV +
Sbjct: 223 DSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFAG 282
Query: 173 --LRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
++PI + + + + L K R R+ + E F+I+ +G+ DV
Sbjct: 283 PQIKPIGGNIMAHASTTRLFLRKGRGEERICKVISSPCLAEAE-ARFQISSEGVTDV 338
>sp|P70099|RA51_CRIGR DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|1552258|emb|CAA69384.1|
(Y08202) rad51 [Cricetulus griseus]
Length = 339
Score = 95.2 bits (233), Expect = 6e-19
Identities = 72/236 (30%), Positives = 112/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFTA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEAEAM-FAINADGVGD 336
>sp|Q91918|R511_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 1 (XRAD51.1)
>gi|1054624|dbj|BAA07501.1| (D38489) XRad51.1 [Xenopus
laevis]
Length = 336
Score = 94.8 bits (232), Expect = 8e-19
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
++TG K LD+LL GGV G I +++G F TGKT + + EGK Y+D
Sbjct: 99 ISTGSKELDKLLQGGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYID 158
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + ++++ +++L++V
Sbjct: 159 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIV 218
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + VAV++ NQV +
Sbjct: 219 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 278
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 279 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 333
>sp|O77507|RA51_RABIT DNA REPAIR PROTEIN RAD51 HOMOLOG 1 >gi|3387769|gb|AAC28561.1|
(AF017729) Rad51 [Oryctolagus cuniculus]
Length = 339
Score = 94.0 bits (230), Expect = 1e-18
Identities = 71/236 (30%), Positives = 111/236 (46%), Gaps = 23/236 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
+TTG K LD+LL GG+ G I +++G F TGKT + + EGK Y+D
Sbjct: 102 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
TEG F PERL +AE GL L + + Q +++ + +V +++L++V
Sbjct: 162 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIV 221
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------T 170
DS TA Y R E S + LA+ L++L LA + V V++ NQV +
Sbjct: 222 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVITNQVVAQVDGAAMFAA 281
Query: 171 NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 282 DPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 336
>gb|AAD32029.1|AF079428_1 (AF079428) RAD51 homolog RAD51A [Zea mays]
Length = 340
Score = 94.0 bits (230), Expect = 1e-18
Identities = 73/237 (30%), Positives = 117/237 (48%), Gaps = 23/237 (9%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTF------AMQVGL---LNEGKVAYVD 63
+TTG + LD++L GG+ G I ++YG F +GKT Q+ L EGK Y+D
Sbjct: 103 VTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGKALYID 162
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKT-VVSDKFSLVVV 122
EG F P+RL Q+A+ GL+ L + + Q R++ + + ++ +F+L+VV
Sbjct: 163 AEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALMVV 222
Query: 123 DSLTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL--- 173
DS TA Y R E S + +AK L+ LQ LA + VAV++ NQV + + +
Sbjct: 223 DSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAMFAG 282
Query: 174 ---RPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
+PI + + + + L K R R+ + E F++ +GI DV
Sbjct: 283 PQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE-ARFQLASEGIADV 338
>sp|Q91917|R512_XENLA DNA REPAIR PROTEIN RAD51 HOMOLOG 2 (XRAD51.2)
>gi|1054622|dbj|BAA07500.1| (D38488) XRad51.2 [Xenopus
laevis]
Length = 336
Score = 93.2 bits (228), Expect = 2e-18
Identities = 70/234 (29%), Positives = 112/234 (46%), Gaps = 23/234 (9%)
Query: 15 TGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVDTE 65
TG K LD+LL GG+ G I +++G F TGKT + + EGK Y+DTE
Sbjct: 101 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTE 160
Query: 66 GGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVVDS 124
G F PERL +AE GL L + + Q +++ + ++++ +++L++VDS
Sbjct: 161 GTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDS 220
Query: 125 LTAHY------RAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN------TNT 172
TA Y R E S + LA+ L++L LA + VAV++ NQV + +
Sbjct: 221 ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADP 280
Query: 173 LRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+PI + + + + L K R R+ + PE + F I G+ D
Sbjct: 281 KKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM-FAINADGVGD 333
>pir||H71450 probable DNA repair protein - Pyrococcus horikoshii
>gi|3256652|dbj|BAA29335.1| (AP000001) 529aa long
hypothetical DNA repair protein [Pyrococcus horikoshii]
Length = 529
Score = 92.4 bits (226), Expect = 4e-18
Identities = 66/185 (35%), Positives = 100/185 (53%), Gaps = 16/185 (8%)
Query: 57 GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRII----SKLKTV 112
G V ++DTE F PER++++A++RGLDP++ L + + N Q ++ K+K +
Sbjct: 346 GSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKEL 405
Query: 113 V-SDK-FSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQV 164
+ +DK L++VDSLT+H+R+E + +LAK L L LA +AV V NQV
Sbjct: 406 LNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQV 465
Query: 165 YYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITD 221
+ + RPI H L + + K + G R+A L PEG V F+IT+
Sbjct: 466 QARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV-FRITE 524
Query: 222 KGIED 226
KGIED
Sbjct: 525 KGIED 529
>gi|6753650 disrupted meiotic cDNA 1 homolog [Mus musculus]
>gi|2500100|sp|Q61880|DMC1_MOUSE MEIOTIC RECOMBINATION
PROTEIN DMC1/LIM15 HOMOLOG >gi|1085524|pir||JC4191
meiosis-specific recombination protein DMC1 homolog -
mouse >gi|961476|dbj|BAA09590.1| (D58419) MmLim15
protein [Mus musculus] >gi|1321647|dbj|BAA10969.1|
(D64107) DMC1 homologue [Mus musculus]
Length = 340
Score = 89.7 bits (219), Expect = 3e-17
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV---------GLLNEGKVAYVD 63
+TTG + D+LLGGG+ I + +G F TGKT + + G + GK+ ++D
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFID 160
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ +D E L + Q ++ + ++ F L+
Sbjct: 161 TENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 220
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
++DS+ A +R + S +LA+ L LQ ++ + NVAV V NQ+ D
Sbjct: 221 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 280
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H L + + + K R +R+A + PE F IT GI D
Sbjct: 281 QADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEAT-FAITAGGIGD 337
>dbj|BAB16892.1| (AB041944) DMC1 [Cynops pyrrhogaster]
Length = 342
Score = 88.5 bits (216), Expect = 6e-17
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TTG + D+LLGGG+ I + +G F TGKT + + + + GKV ++D
Sbjct: 103 ITTGSQEFDKLLGGGIESMAITETFGEFRTGKTQLSHTLCVTAQLPGTDGYTGGKVIFID 162
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ +D + L + Q ++ + ++ F L+
Sbjct: 163 TENTFRPDRLRDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 222
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
V+DS+ A +R + S +LA+ L LQ ++ + NVAV V NQ+ D
Sbjct: 223 VIDSIMALFRVDFSGRGELAERQQKLAQMLARLQKISEEYNVAVFVTNQMTADPGAAMSF 282
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H L + + + K R +R+A + PE F IT GI D
Sbjct: 283 QADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENEAT-FAITAGGISD 339
>sp|Q27297|RA51_DROME DNA REPAIR PROTEIN RAD51 HOMOLOG (RECA PROTEIN HOMOLOG)
>gi|693878|dbj|BAA04580.1| (D17726) Rad51 [Drosophila
melanogaster] >gi|762789|gb|AAA64873.1| (L41342) RAD51
homolog; putative [Drosophila melanogaster]
>gi|807700|dbj|BAA07039.1| (D37788) RecA protein
homologue [Drosophila melanogaster]
>gi|7301897|gb|AAF57005.1| (AE003772) Rad51 gene product
[Drosophila melanogaster]
Length = 336
Score = 87.8 bits (214), Expect = 1e-16
Identities = 68/237 (28%), Positives = 113/237 (46%), Gaps = 26/237 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVD 63
L+TG K LD+LLGGG+ G I +++G F GKT + + EGK Y+D
Sbjct: 99 LSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYID 158
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVV-SDKFSLVVV 122
TE F PERL +A+ L+ + L + ++Q ++I ++ +++L++V
Sbjct: 159 TENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALLIV 218
Query: 123 DSLTAHYRAE--------GSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN----- 169
DS A YR++ ++H+ L L++LQ LA + VAV++ NQV +
Sbjct: 219 DSAMALYRSDYIGRGELAARQNHLGLF--LRMLQRLADEFGVAVVITNQVTASLDGAPGM 276
Query: 170 TNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H + + + L K + R+ + PE + F I GI D
Sbjct: 277 FDAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESEAM-FAILPDGIGD 332
>sp|Q14565|DMC1_HUMAN MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HOMOLOG
>gi|1363937|pir||JC4333 meiosis-specific RecA-like
protein - human >gi|1066001|dbj|BAA09932.1| (D63882)
HsLim15 [Homo sapiens]
Length = 340
Score = 87.4 bits (213), Expect = 1e-16
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV---------GLLNEGKVAYVD 63
+TTG + D+LLGGG+ I + +G F TGKT + + G GK+ ++D
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 160
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ +D + L + Q ++ + ++ F L+
Sbjct: 161 TENTFRPDRLRDIADRFNVDHDPVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 220
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
++DS+ A +R + S +LA+ L LQ ++ + NVAV V NQ+ D
Sbjct: 221 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 280
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H L + + + K R +R+A + PE F IT GI D
Sbjct: 281 QADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEAT-FAITAGGIGD 337
>gi|5901996 DMC1 (dosage suppressor of mck1, yeast homolog) meiosis-specific
homologous recombination; disrupted meiotic cDNA1,
yeast, homolog of [Homo sapiens] >gi|2135607|pir||S62354
meiosis-specific recombination protein DMC1 - human
>gi|1321636|dbj|BAA10970.1| (D64108) DMC1 homologue
[Homo sapiens]
Length = 340
Score = 87.4 bits (213), Expect = 1e-16
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV---------GLLNEGKVAYVD 63
+TTG + D+LLGGG+ I + +G F TGKT + + G GK+ ++D
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 160
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ +D + L + Q ++ + ++ F L+
Sbjct: 161 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 220
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
++DS+ A +R + S +LA+ L LQ ++ + NVAV V NQ+ D
Sbjct: 221 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 280
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H L + + + K R +R+A + PE F IT GI D
Sbjct: 281 QADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEAT-FAITAGGIGD 337
>emb|CAB45656.1| (AL022320) dJ199H16.1 (DMC1 ((dosage suppressor of mck1, yeast
homolog) meiosis-specific homologous recombination
protein (LIM15))) [Homo sapiens]
Length = 340
Score = 87.4 bits (213), Expect = 1e-16
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQV---------GLLNEGKVAYVD 63
+TTG + D+LLGGG+ I + +G F TGKT + + G GK+ ++D
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 160
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ +D + L + Q ++ + ++ F L+
Sbjct: 161 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 220
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
++DS+ A +R + S +LA+ L LQ ++ + NVAV V NQ+ D
Sbjct: 221 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 280
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI H L + + + K R +R+A + PE F IT GI D
Sbjct: 281 QADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEAT-FAITAGGIGD 337
>gb|AAC23499.1| (AF008421) RadA [Methanococcus voltae]
Length = 322
Score = 84.7 bits (206), Expect = 9e-16
Identities = 68/244 (27%), Positives = 108/244 (43%), Gaps = 31/244 (12%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTF-------------------AMQVGL 53
L+T LD +LGGG+ + + G F +GKT A+ G
Sbjct: 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 139
Query: 54 LNEGKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVV 113
+ + K Y+DTEG F PER+ QMAE G+D + L + + + Q K++ ++
Sbjct: 140 VAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLI 199
Query: 114 SD--KFSLVVVDSLTAHYRAEG------SRDHVELAKQLQVLQWLARKKNVAVIVVNQVY 165
+ LVV+DSLT+ +R E + +L + + L LA N V+V NQV
Sbjct: 200 QEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVS 259
Query: 166 YDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDK 222
+ + I H +G+ K + R+A L P+ + F+IT+K
Sbjct: 260 AKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAI-FRITEK 318
Query: 223 GIED 226
GI+D
Sbjct: 319 GIQD 322
>gb|AAB53331.1| (U94994) Dmc1 homolog [Bombyx mori]
Length = 341
Score = 80.8 bits (196), Expect = 1e-14
Identities = 64/238 (26%), Positives = 109/238 (44%), Gaps = 25/238 (10%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
++TG LD+LL GG+ I +V+G F TGKT + + + + GKV ++D
Sbjct: 102 ISTGSTELDKLLAGGIESMAITEVFGEFRTGKTQLSHTLCVTTQIPNSKGYQGGKVMFLD 161
Query: 64 TEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDK---FSLV 120
TE F P+RL+ +A+ LD L + Q ++ + ++ F L+
Sbjct: 162 TEHTFRPDRLRPIADRFNLDQNAVLDNVLYARAYTSEHQAELLDYVAAKFHEEAGVFKLL 221
Query: 121 VVDSLTAHYRAEGS------RDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS------ 168
++DS+ A +R + S +LA+ L LQ ++ + NVAV + NQ+ D
Sbjct: 222 IIDSIMALFRVDFSGRGELADRQQKLAQVLSRLQKISEEYNVAVFITNQMTADPGATLTF 281
Query: 169 NTNTLRPIAEHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIED 226
+ +PI + L + + + K R R+A + PE F IT+ G+ D
Sbjct: 282 QADPKKPIGGNILAHASTTRISLRKGRGDNRIAKIYDSPDLPESEAT-FAITNGGVAD 338
>emb|CAC01068.1| (AL390935) probable DNA repair protein rad51 homolog 2 [Leishmania
major]
Length = 284
Score = 79.2 bits (192), Expect = 4e-14
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 23/186 (12%)
Query: 33 ILQVYGPFATGKTTFAMQVGLL---------NEGKVAYVDTEGGFSPERLKQMAESRGLD 83
I +++G F TGKT + + EG Y+DTEG F PERL +AE LD
Sbjct: 2 ITELFGEFRTGKTQLCHTLCVTCQLPISQGGAEGMALYIDTEGTFRPERLVAVAERYKLD 61
Query: 84 PEKALSKFIIFEPMDLNEQRRIISKLKTVVSD-KFSLVVVDSLTAHYRAEGS------RD 136
PE L+ + + Q++++ + ++++ +F+L++VDS TA YR + S
Sbjct: 62 PEDVLANVACARAFNTDHQQQLLLQASAMMAENRFALIIVDSATALYRTDYSGRNELAAR 121
Query: 137 HVELAKQLQVLQWLARKKNVAVIVVNQVYYDSN-------TNTLRPIAEHTLGYRTKDIL 189
+ L K L+ L LA + VAV+V NQV + + ++ +PI H + + + L
Sbjct: 122 QMHLGKFLRSLHNLAEEYGVAVVVTNQVVANVDGSAQMFQADSKKPIGGHIMAHASTTRL 181
Query: 190 RFEKFR 195
K R
Sbjct: 182 SLRKGR 187
>gi|10835029 RAD51 (S. cerevisiae)-like 1 [Homo sapiens]
>gi|11435206|ref|XP_007456.1| RAD51 (S. cerevisiae)-like
1 [Homo sapiens] >gi|3914524|sp|O15315|R51B_HUMAN DNA
REPAIR PROTEIN RAD51 HOMOLOG 2 (R51H2)
>gi|2262209|gb|AAB63358.1| (U92074) RecA-like protein
[Homo sapiens] >gi|2801405|gb|AAC39723.1| (U84138) DNA
repair protein RAD51B [Homo sapiens]
Length = 350
Score = 77.6 bits (188), Expect = 1e-13
Identities = 58/177 (32%), Positives = 93/177 (51%), Gaps = 25/177 (14%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 63
L+T + LDE L GGVA G + ++ GP GKT F + + +L EG V Y+D
Sbjct: 83 LSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYID 142
Query: 64 TEGGFSPERLKQMAES---RGLDPEKAL----SKFIIFEPMDLNE-QRRIISKLKTVVSD 115
TE FS ERL ++AES R + E+ L SK ++ + +E +RI S + ++S
Sbjct: 143 TESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK 202
Query: 116 KFSLVVVDSLTAHYRAEGSRD--------HVELAKQLQVLQWLARKKNVAVIVVNQV 164
LV++DS+ + R E + LA++ L++LA + ++ VI+ NQ+
Sbjct: 203 GIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQI 259
>emb|CAA75680.1| (Y15571) possible altenative splicing. Variation under U92074 [Homo
sapiens]
Length = 350
Score = 77.6 bits (188), Expect = 1e-13
Identities = 58/177 (32%), Positives = 93/177 (51%), Gaps = 25/177 (14%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 63
L+T + LDE L GGVA G + ++ GP GKT F + + +L EG V Y+D
Sbjct: 83 LSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYID 142
Query: 64 TEGGFSPERLKQMAES---RGLDPEKAL----SKFIIFEPMDLNE-QRRIISKLKTVVSD 115
TE FS ERL ++AES R + E+ L SK ++ + +E +RI S + ++S
Sbjct: 143 TESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK 202
Query: 116 KFSLVVVDSLTAHYRAEGSRD--------HVELAKQLQVLQWLARKKNVAVIVVNQV 164
LV++DS+ + R E + LA++ L++LA + ++ VI+ NQ+
Sbjct: 203 GIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQI 259
>gb|AAD16078.1| (AF090212) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #8']
Length = 133
Score = 74.9 bits (181), Expect = 8e-13
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 57 GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS-- 114
GK Y+DTEG F ER++ MA + GLDP++ALS + ++ + Q I+ +L+ +++
Sbjct: 22 GKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIRAINTDHQIAIVEELQDLIAKD 81
Query: 115 DKFSLVVVDSLTAHYRAEGS-RDHV-----ELAKQLQVLQWLARKKNVAVIV 160
D+ LVVVDS+T+H+RAE S R+++ +L + L L LA ++AV+V
Sbjct: 82 DRIKLVVVDSVTSHFRAEYSGRENLAARQQKLNRHLHQLVRLAEIYDLAVVV 133
>gb|AAD16082.1| (AF090216) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #16']
Length = 133
Score = 74.9 bits (181), Expect = 8e-13
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 57 GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS-- 114
GK Y+DTEG F ER++ MA + GLDP++ALS + ++ + Q I+ +L+ +++
Sbjct: 22 GKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIRAINTDHQIAIVEELQDLIAKD 81
Query: 115 DKFSLVVVDSLTAHYRAEGS-RDHV-----ELAKQLQVLQWLARKKNVAVIV 160
D+ LVVVDS+T+H+RAE S R+++ +L + L L LA ++AV+V
Sbjct: 82 DRIKLVVVDSVTSHFRAEYSGRENLATRQQKLNRHLHQLVRLAEIYDLAVVV 133
>sp|O66827|RADA_AQUAE DNA REPAIR PROTEIN RADA HOMOLOG (DNA REPAIR PROTEIN SMS HOMOLOG)
>gi|7429113|pir||G70349 DNA repair protein sms - Aquifex
aeolicus >gi|2983190|gb|AAC06790.1| (AE000695)
ATP-dependent protease sms [Aquifex aeolicus]
Length = 444
Score = 74.5 bits (180), Expect = 1e-12
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 23/220 (10%)
Query: 14 TTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVG--LLNEGKVAYVDTEGGFSPE 71
TTG + LD LGGG+ +G ++ + G GK+T +Q+ + N KV YV G S
Sbjct: 67 TTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGKKVLYV--SGEESGT 124
Query: 72 RLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAHY-- 129
++ A+ G++ E L ++ ++L + L+T+ +K SL+V+DS+ +
Sbjct: 125 QIALRAKRLGINNENLL----VYPEVNLEK------ILQTLEKEKPSLLVLDSVQTIFSE 174
Query: 130 RAEGSRDHVELAKQLQV-LQWLARKKNVAVIVVNQVYYDSNTNTLRPIAEHTLGYRTKDI 188
R E S V +++ + ++KNV +V Q+ + + + + EH + +
Sbjct: 175 RLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPK-VLEHIV----DTV 229
Query: 189 LRFEKFRVG-VRLAVLERHRFRPEGGIVYFKITDKGIEDV 227
L+FE R R+ + ++RF G I FK+TDKG+E+V
Sbjct: 230 LQFEGERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEV 269
>gb|AAB82635.1| (AC002387) putative RAD51C-like DNA repair protein [Arabidopsis
thaliana]
Length = 332
Score = 73.4 bits (177), Expect = 2e-12
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TT LD +LGGG++ + ++ G GKT +Q+ + + GK Y+D
Sbjct: 75 ITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYID 134
Query: 64 TEGGFSPERLKQMAESRGLD--------------------PEKALSKFIIFEPMDLNEQR 103
TEG F ER Q+AE+ D PE L F EQ
Sbjct: 135 TEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQI 194
Query: 104 RIISKLKTVVSD-KFSLVVVDSLTAHYRAEGSRDHVELAKQLQVL-------QWLARKKN 155
+++ L+ +S+ K +V+VDS+T H+R +D+ +LA++ +VL LA+K +
Sbjct: 195 ALVNHLEKFISENKDVVVIVDSITFHFR----QDYDDLAQRTRVLSEMALKFMKLAKKFS 250
Query: 156 VAVIVVNQV 164
+AV+++NQV
Sbjct: 251 LAVVLLNQV 259
>gb|AAG20547.1| (AE005125) DNA repair protein; RadA1 [Halobacterium sp. NRC-1]
Length = 386
Score = 73.0 bits (176), Expect = 3e-12
Identities = 71/263 (26%), Positives = 113/263 (41%), Gaps = 53/263 (20%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGLLNE-----GKVAYVD 63
LT + +D+LLGGGV I +VYG F GK+ A+ V L E G+ ++D
Sbjct: 125 LTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFID 184
Query: 64 TEGGFSPERLKQMAESRGLDPEKA--------------------------LSKFIIFEPM 97
+E F PER+ M RGL E L K + +
Sbjct: 185 SEDTFRPERIDDMV--RGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKGF 242
Query: 98 DLNEQRRIISKLKTVVSD------KFSLVVVDSLTAHYRAEG------SRDHVELAKQLQ 145
+ N Q + K K + S+ ++ VDSLTAH+RAE + +L K L
Sbjct: 243 NSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHLH 302
Query: 146 VLQWLARKKNVAVIVVNQVYYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAV 202
L+ + N AV+V NQV + + + +PI + LG+++ + K + R+
Sbjct: 303 DLEKVGNLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLRKSKNDKRIVK 362
Query: 203 LERHRFRPEGGIVYFKITDKGIE 225
L +G V ++ D+G++
Sbjct: 363 LVDAPNLADGEAV-MRVQDEGLK 384
>gi|6755278 RAD51 like 3 (S. cerevisiae) [Mus musculus]
>gi|7388045|sp|O55230|R51D_MOUSE DNA REPAIR PROTEIN
RAD51 HOMOLOG 4 >gi|2696715|dbj|BAA24010.1| (AB007040)
Trad [Mus musculus] >gi|2920580|gb|AAC40093.1|
(AF034955) RAD51D [Mus musculus]
>gi|3005974|emb|CAA75679.1| (Y15570) R51H3 [Mus
musculus]
Length = 329
Score = 73.0 bits (176), Expect = 3e-12
Identities = 58/184 (31%), Positives = 91/184 (48%), Gaps = 24/184 (13%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTF----AMQVGLLNEGKVAYVDTEGGF 68
L+TG+ LD+LL G+ G + ++ G +GKT A V + V YVD+ GG
Sbjct: 82 LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQNVLYVDSNGGM 141
Query: 69 SPERLKQMAESRGLDPEKALS---------KFIIFEPMD-LNEQRRIISKLKTVVSDKFS 118
+ RL Q+ ++R D EK S F IF +D L + R I++ + S
Sbjct: 142 TASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQQEATSSGAVK 201
Query: 119 LVVVDSLTA-------HYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTN 171
+V+VDS+TA + EG ++LA++L++ LAR VAV+V N + D +
Sbjct: 202 VVIVDSVTAVVAPLLGGQQREGLALMMQLARELKI---LARDLGVAVVVTNHLTRDWDGR 258
Query: 172 TLRP 175
+P
Sbjct: 259 RFKP 262
>gb|AAD16076.1| (AF090210) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #4']
Length = 129
Score = 73.0 bits (176), Expect = 3e-12
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 57 GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVS-- 114
GK Y+DTEG F ER++ MA + GLDP++ALS + ++ + Q I+ +L+ +++
Sbjct: 22 GKALYIDTEGTFRTERIRAMASALGLDPKEALSNIMSIRAINTDHQIAIVEELQDLIAKD 81
Query: 115 DKFSLVVVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVI 159
D+ LVVVDS+T+H+RAE S A+Q ++ + L + +A I
Sbjct: 82 DRIKLVVVDSVTSHFRAEYSGRENLAARQQKLNRHLHQLVRLAEI 126
>emb|CAC14294.1| (AJ296174) Rad51C protein [Arabidopsis thaliana]
Length = 363
Score = 72.6 bits (175), Expect = 4e-12
Identities = 55/190 (28%), Positives = 91/190 (46%), Gaps = 42/190 (22%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TT LD +LGGG++ + ++ G GKT +Q+ + + GK Y+D
Sbjct: 105 ITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYID 164
Query: 64 TEGGFSPERLKQMAESRGLD--------------------PEKALSKFIIFEPMDLNEQR 103
TEG F ER Q+AE+ D PE L F EQ
Sbjct: 165 TEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQI 224
Query: 104 RIISKLKTVVSDK--FSLVVVDSLTAHYRAEGSRDHVELAKQLQVL-------QWLARKK 154
+++ L+ +S+ +V+VDS+T H+R +D+ +LA++ +VL LA+K
Sbjct: 225 ALVNHLEKFISENKDVKVVIVDSITFHFR----QDYDDLAQRTRVLSEMALKFMKLAKKF 280
Query: 155 NVAVIVVNQV 164
++AV+++NQV
Sbjct: 281 SLAVVLLNQV 290
>dbj|BAA25914.1| (AB013341) Trad [Homo sapiens]
Length = 328
Score = 72.2 bits (174), Expect = 5e-12
Identities = 57/184 (30%), Positives = 93/184 (49%), Gaps = 24/184 (13%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGLLNEGKVAYVDTEGGF 68
L+TG+ LD+LL G+ G + ++ G +GKT A V + V YVD+ GG
Sbjct: 82 LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGL 141
Query: 69 SPERLKQMAESRGLDPE---------KALSKFIIFEPMD-LNEQRRIISKLKTVVSDKFS 118
+ RL Q+ +++ D E + + F IF+ +D L E R +++ T S
Sbjct: 142 TASRLLQLLQAKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVK 201
Query: 119 LVVVDSLTA-------HYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTN 171
+VVVDS+TA + EG ++LA++L+ LAR +AV+V N + D ++
Sbjct: 202 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKT---LARDLGMAVVVTNHITRDRDSG 258
Query: 172 TLRP 175
L+P
Sbjct: 259 RLKP 262
>sp|O75771|R51D_HUMAN DNA REPAIR PROTEIN RAD51 HOMOLOG 4 (R51H3) (TRAD)
>gi|3292970|emb|CAA75681.1| (Y15572) R51H3 [Homo
sapiens]
Length = 328
Score = 72.2 bits (174), Expect = 5e-12
Identities = 57/184 (30%), Positives = 93/184 (49%), Gaps = 24/184 (13%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGLLNEGKVAYVDTEGGF 68
L+TG+ LD+LL G+ G + ++ G +GKT A V + V YVD+ GG
Sbjct: 82 LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGL 141
Query: 69 SPERLKQMAESRGLDPE---------KALSKFIIFEPMD-LNEQRRIISKLKTVVSDKFS 118
+ RL Q+ +++ D E + + F IF+ +D L E R +++ T S
Sbjct: 142 TASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVK 201
Query: 119 LVVVDSLTA-------HYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTN 171
+VVVDS+TA + EG ++LA++L+ LAR +AV+V N + D ++
Sbjct: 202 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKT---LARDLGMAVVVTNHITRDRDSG 258
Query: 172 TLRP 175
L+P
Sbjct: 259 RLKP 262
>pir||T43802 recombination/repair protein radA [imported] - Halobacterium
salinarum >gi|4322492|gb|AAD16062.1| (AF090196)
recombination/repair protein RadA [Halobacterium
halobium]
Length = 353
Score = 71.8 bits (173), Expect = 7e-12
Identities = 71/263 (26%), Positives = 113/263 (41%), Gaps = 53/263 (20%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKT----TFAMQVGLLNE-----GKVAYVD 63
LT + +D+LLGGGV I +VYG F GK+ A+ V L E G+ ++D
Sbjct: 92 LTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGALHGRAVFID 151
Query: 64 TEGGFSPERLKQMAESRGLDPEKA--------------------------LSKFIIFEPM 97
+E F PER+ M RGL E L K + +
Sbjct: 152 SEDTFRPERIDDMV--RGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKGF 209
Query: 98 DLNEQRRIISKLKTVVSD------KFSLVVVDSLTAHYRAEG------SRDHVELAKQLQ 145
+ N Q + K K + S+ ++ VDSLTAH+RAE + +L K L
Sbjct: 210 NSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHLH 269
Query: 146 VLQWLARKKNVAVIVVNQVYYDSNT---NTLRPIAEHTLGYRTKDILRFEKFRVGVRLAV 202
L+ + N AV+V NQV + + + +PI + LG+++ + K + R+
Sbjct: 270 DLEPVGDLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLRKSKNDKRIVK 329
Query: 203 LERHRFRPEGGIVYFKITDKGIE 225
L +G V ++ D+G++
Sbjct: 330 LVDAPNLADGEAV-MRVQDEGLK 351
>gi|6320207 RecA homolog (similar to DMC1, RAD51, and RAD55), interacts with
Rad 55p by two-hybrid analysis; Rad57p [Saccharomyces
cerevisiae] >gi|131784|sp|P25301|RA57_YEAST DNA REPAIR
PROTEIN RAD57 >gi|83450|pir||JQ1275 RAD57 protein -
yeast (Saccharomyces cerevisiae)
>gi|172345|gb|AAA34950.1| (M65061) DNA repair protein
[Saccharomyces cerevisiae] >gi|642809|emb|CAA88064.1|
(Z48008) Rad57p [Saccharomyces cerevisiae]
Length = 460
Score = 71.8 bits (173), Expect = 7e-12
Identities = 60/190 (31%), Positives = 94/190 (48%), Gaps = 25/190 (13%)
Query: 14 TTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGL---LNE------GKVAYVDT 64
TT +DELLGGG+ I +++G +TGK+ MQ+ L L+E GK Y+ T
Sbjct: 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITT 160
Query: 65 EGGFSPERLKQMAESRGLDPEKALSKFIIFEPM--DLNEQRRIISKLKTVVSDK----FS 118
EG +RL+ M SR + +++ IF DL Q II+ ++ ++
Sbjct: 161 EGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIK 220
Query: 119 LVVVDSLTAHYRAE----GSRDHVE----LAKQLQVLQWLARKKNVAVIVVNQVYYDSNT 170
LV++DS++ H R E R+ E L + + LQ LA +++V+V NQV
Sbjct: 221 LVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPLA 280
Query: 171 NTLRPIAEHT 180
N+ P+A T
Sbjct: 281 NS--PVAHRT 288
>gb|AAD16075.1| (AF090209) recombination/repair protein RadA [uncultured archaeon
'Norris Geyer Basin #1']
Length = 132
Score = 71.4 bits (172), Expect = 9e-12
Identities = 44/112 (39%), Positives = 63/112 (55%), Gaps = 9/112 (8%)
Query: 57 GKVAYVDTEGGFSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKL-KTVVSD 115
GK AY+DTEG F ER+ QMA GLDP+K + ++ + Q I+ +L + + +
Sbjct: 22 GKAAYIDTEGTFRWERIDQMARGLGLDPDKVMDNIYWIRAINSHHQMAIVDQLFEMIDKE 81
Query: 116 KFSLVVVDSLTAHYRAE-------GSRDHVELAKQLQVLQWLARKKNVAVIV 160
LV+VDSLT+H+RAE SR + L K L L LA ++AV+V
Sbjct: 82 PVRLVIVDSLTSHFRAEFPGRENLASRQQL-LNKHLHQLMRLAEVYDIAVVV 132
>emb|CAC14091.1| (AJ299424) RAD51C protein [Arabidopsis thaliana]
Length = 363
Score = 71.0 bits (171), Expect = 1e-11
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 42/190 (22%)
Query: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63
+TT LD +LGGG++ + ++ G GKT +Q+ + + GK Y+D
Sbjct: 105 ITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYID 164
Query: 64 TEGGFSPERLKQMAESRGLD--------------------PEKALSKFIIFEPMDLNEQR 103
TEG F +R Q+AE+ D PE L F EQ
Sbjct: 165 TEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQI 224
Query: 104 RIISKLKTVVSDK--FSLVVVDSLTAHYRAEGSRDHVELAKQLQVL-------QWLARKK 154
+++ L+ +S+ +V+VDS+T H+R +D+ +LA++ +VL LA+K
Sbjct: 225 ALVNHLEKFISENKDVKVVIVDSITFHFR----QDYDDLAQRTRVLSEMALKFMKLAKKF 280
Query: 155 NVAVIVVNQV 164
++AV+++NQV
Sbjct: 281 SLAVVLLNQV 290
>pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii
>gi|3257244|dbj|BAA29927.1| (AP000003) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 69.9 bits (168), Expect = 3e-11
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 24/237 (10%)
Query: 1 MRASKYEAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---G 57
++ S+ + +TTG++ LDE+L GG+ +G + + G TGKTTF++ + N
Sbjct: 256 LKISEKDYTSEKITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIANALQGR 315
Query: 58 KVAYVDTEGGFSPERLKQMAESRGLDPEKALS---KFIIFEPMDLNEQRRIISKLKTVVS 114
KVAY+ E +++ + A++ G+ E+ L K + P I K+K ++
Sbjct: 316 KVAYITFEEPI--DQIIRSAKNYGMPIEEVLGRNLKIFAWVPESKTPVHTYI-KIKEIIE 372
Query: 115 D-KFSLVVVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTL 173
+ K +++DSLTA D EL K L+ LQ L ++K + Y+
Sbjct: 373 EFKPEALIIDSLTA---LREHLDEKELTKMLRYLQLLTKEKRIT------TYFTFTEEAK 423
Query: 174 RPIAEHTLGYRTKDIL-----RFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIE 225
+ T D++ E ++ RLA+++ I ++IT++G+E
Sbjct: 424 FDVVPFTGASTMVDVIILLKYEIENEKIEKRLAIIKARGSNHSRKIHKYEITNRGVE 480
>gb|AAG34563.1| (AF321522) recombination/repair protein [Methanosarcina barkeri]
Length = 159
Score = 68.3 bits (164), Expect = 8e-11
Identities = 46/144 (31%), Positives = 73/144 (49%), Gaps = 17/144 (11%)
Query: 38 GPFATGKTTFAMQVGLLNE---------GKVAYVDTEGGFSPERLKQMAESRGLDPEKAL 88
G F +GK+ + ++ + + + ++DTE F PER++Q+A LD E+AL
Sbjct: 11 GEFGSGKSQISHELAVTVQLPEEKGGLDAECVFIDTENTFRPERVEQIATGFELDTEEAL 70
Query: 89 SKFIIFEPMDLNEQRRIISKLKTVVSD--KFSLVVVDSLTAHYRAEG------SRDHVEL 140
+ I + + Q + K+ ++ LV+VDSLTAH+RAE + +L
Sbjct: 71 QRIHIARAFNSSHQILMADKINELIQSGTNIKLVIVDSLTAHFRAEYVGRETLATRQQKL 130
Query: 141 AKQLQVLQWLARKKNVAVIVVNQV 164
+ L LQ +A NVAV V NQV
Sbjct: 131 NQHLHTLQNIANTYNVAVFVTNQV 154
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84156431
Number of Sequences: 2977
Number of extensions: 3341632
Number of successful extensions: 9729
Number of sequences better than 1.0e-10: 95
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 9471
Number of HSP's gapped (non-prelim): 97
length of query: 239
length of database: 189,106,746
effective HSP length: 57
effective length of query: 182
effective length of database: 154,992,987
effective search space: 28208723634
effective search space used: 28208723634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)