BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2271 (PAB2271) DE:Hypothetical protein
         (128 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (st...   257  3e-68
pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (st...    85  3e-16
gi|11499937 conserved hypothetical protein [Archaeoglobus fulgid...    84  7e-16
gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfat...    75  3e-13

>pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (strain Orsay)
           >gi|5457549|emb|CAB49040.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 128
           
 Score =  257 bits (651), Expect = 3e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTVIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNV 60
           MTVIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNV
Sbjct: 1   MTVIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNV 60

Query: 61  ISSILNSPRTRVIGDNGRYTKRALELTKNPRRFNDMIILATAEQFKRLATYDKRLKKEAE 120
           ISSILNSPRTRVIGDNGRYTKRALELTKNPRRFNDMIILATAEQFKRLATYDKRLKKEAE
Sbjct: 61  ISSILNSPRTRVIGDNGRYTKRALELTKNPRRFNDMIILATAEQFKRLATYDKRLKKEAE 120

Query: 121 RLGIETMP 128
           RLGIETMP
Sbjct: 121 RLGIETMP 128


>pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (strain Orsay)
           >gi|5458196|emb|CAB49685.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 136
           
 Score = 85.0 bits (207), Expect = 3e-16
 Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 3   VIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNVIS 62
           VIDT++ IY    D EF+  AR LL SL +W VP+IVL E  WFF+   +   +  +++ 
Sbjct: 4   VIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSMLM 63

Query: 63  SILNSPRTRVIGDNGRYTKRALELTKNPR----RFNDMIILATAEQFK-RLATYDKRLKK 117
             +  PR + +G++      AL++ +        FND IIL  A   K  LAT+D++L+K
Sbjct: 64  EYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLRK 123

Query: 118 EAERLGIETMP 128
            A + GI  +P
Sbjct: 124 LATKHGIRVLP 134


>gi|11499937 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483248|pir||H69544 conserved hypothetical protein
           AF2360 - Archaeoglobus fulgidus
           >gi|2650736|gb|AAB91304.1| (AE001113) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 134
           
 Score = 83.9 bits (204), Expect = 7e-16
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 3   VIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNVIS 62
           VIDTNV +Y    DS F+  A  LL  ++ W++P+IV++E  W  +       EI   + 
Sbjct: 4   VIDTNVIVYDTFEDSVFHQEAMQLLDRIDVWVIPTIVIHEYVWVLKSLKVDVKEIKYKVE 63

Query: 63  SILNSPRTRVIGDNGRYTKRALELT----KNPRRFNDMIILATAEQFK-RLATYDKRLKK 117
             LN  +T+++ +N +    ALE       +  R+ND +ILA A + K  LAT+D+RL++
Sbjct: 64  EYLNHYKTKMVSENKQIVLSALERIVGGGLSLSRYNDELILAVAGREKISLATFDERLRR 123

Query: 118 EAERLGIETMP 128
           +A   G+E +P
Sbjct: 124 QARARGVEVIP 134


>gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 134
           
 Score = 74.9 bits (181), Expect = 3e-13
 Identities = 41/130 (31%), Positives = 75/130 (57%), Gaps = 7/130 (5%)

Query: 3   VIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNVIS 62
           ++DTNV IY  + DSE++ RA  LL SL+RW++P IV++E+ WF +  G   ++  + + 
Sbjct: 5   IVDTNVIIYDYVEDSEYHKRAEELLDSLDRWVIPVIVVHEIMWFLK--GMKLEDKVDDVL 62

Query: 63  SILNSPRTRVIGDNGRYTKRALELTKNPR----RFNDMIILATAEQFK-RLATYDKRLKK 117
           + + S +  V+ D       A+ +    +     + DM+IL+ A + K  LAT+D++L K
Sbjct: 63  AYIRSEKAEVVCDCTDNVTDAIGVLNKEKLPLVSYKDMVILSHAIREKLPLATFDRKLSK 122

Query: 118 EAERLGIETM 127
            A++  +  +
Sbjct: 123 IAKKYSVSLL 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44231821
Number of Sequences: 2977
Number of extensions: 1668292
Number of successful extensions: 3642
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3638
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 189,106,746
effective HSP length: 53
effective length of query: 75
effective length of database: 157,386,935
effective search space: 11804020125
effective search space used: 11804020125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)