BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2275 101451 101086 -122 !not a gene!
         (122 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71231 hypothetical protein PH0111 - Pyrococcus horikoshii ...    99  1e-20

>pir||E71231 hypothetical protein PH0111 - Pyrococcus horikoshii
           >gi|3256497|dbj|BAA29180.1| (AP000001) 115aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 115
           
 Score = 99.5 bits (244), Expect = 1e-20
 Identities = 53/115 (46%), Positives = 60/115 (52%)

Query: 8   ILTLPFLHSTVECPKVNLPGGILTNFIAMEPFSWFRYSTTPRGERFIILAGSPLENAPRG 67
           +L  PFLH   EC +VN PGG L +F  + P  WF YS TP G+ FIILAGS      RG
Sbjct: 1   MLITPFLHLLFECRRVNFPGGTLVSFRIILPSLWFIYSMTPSGDLFIILAGSSPPKILRG 60

Query: 68  VTHTQEXXXXXXXXXXGEYSLNPFSLGRTIFXXXXXXXXXXXXXXXXXXMADFSE 122
           VT+TQE          GEY L P SLGRTIF                  +ADFSE
Sbjct: 61  VTYTQESSSISTRTSSGEYPLKPSSLGRTIFPFITHSPFVFLSILSILTIADFSE 115


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37777055
Number of Sequences: 2977
Number of extensions: 1377122
Number of successful extensions: 1410
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 1
length of query: 122
length of database: 189,106,746
effective HSP length: 49
effective length of query: 73
effective length of database: 159,780,883
effective search space: 11664004459
effective search space used: 11664004459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)