BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2276 100038 99601 -146 !not a gene!
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71231 hypothetical protein PH0110 - Pyrococcus horikoshii ...   137  7e-32

>pir||D71231 hypothetical protein PH0110 - Pyrococcus horikoshii
           >gi|3256496|dbj|BAA29179.1| (AP000001) 167aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 167
           
 Score =  137 bits (341), Expect = 7e-32
 Identities = 73/128 (57%), Positives = 83/128 (64%)

Query: 2   FILSSEKSVGLLLGNSMSLARSSILLIPTSSKTFLSAGPIPRSPRLLFSKASERHRGSNW 61
           F     K +GL +GN +  ARSSI+LIP  S T +S G IPR PRLLFS+ASERH+GSNW
Sbjct: 40  FTWGLSKLMGLSVGNVIRFARSSIVLIPIFSNTLISPGGIPRIPRLLFSRASERHKGSNW 99

Query: 62  QVVHLAVIQGSLHFISKFNFXXXXXXXXXXXXGKLRNSFGHGNLSLVITASFMFPSTIFL 121
            VVHLAVIQ SLH IS  +F            GK +NS G G LSLV  ASF+ P TI  
Sbjct: 100 HVVHLAVIQASLHLISSLSFSSIVVTNSKTSFGKSKNSRGQGKLSLVTMASFILPLTILS 159

Query: 122 SSIAYITA 129
           SSI YITA
Sbjct: 160 SSIPYITA 167


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.134    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42936715
Number of Sequences: 2977
Number of extensions: 1294826
Number of successful extensions: 3731
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3730
Number of HSP's gapped (non-prelim): 1
length of query: 146
length of database: 189,106,746
effective HSP length: 55
effective length of query: 91
effective length of database: 156,189,961
effective search space: 14213286451
effective search space used: 14213286451
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)