BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2278 (icc) DE:lacZ expression regulatory protein (icc)
(505 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75197 lacz expression regulatory protein (icc) PAB2278 - P... 1037 0.0
pir||F71230 hypothetical protein PH0104 - Pyrococcus horikoshii ... 969 0.0
pir||C69097 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.... 170 3e-41
pir||A70360 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.... 150 4e-35
gi|11500006 lacZ expression regulatory protein (icc) [Archaeoglo... 146 5e-34
pir||F69104 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.... 140 3e-32
sp|P36650|ICC_ECOLI ICC PROTEIN >gi|7428142|pir||F65090 3',5'-cy... 74 3e-12
gb|AAA69200.1| (U28377) icc gene product [Escherichia coli] 69 9e-11
pir||T35867 hypothetical protein SC9B1.22c - Streptomyces coelic... 69 9e-11
>pir||G75197 lacz expression regulatory protein (icc) PAB2278 - Pyrococcus
abyssi (strain Orsay) >gi|5457539|emb|CAB49030.1|
(AJ248283) lacZ expression regulatory protein (icc)
[Pyrococcus abyssi]
Length = 505
Score = 1037 bits (2651), Expect = 0.0
Identities = 505/505 (100%), Positives = 505/505 (100%)
Query: 1 MMKMLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASY 60
MMKMLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASY
Sbjct: 1 MMKMLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASY 60
Query: 61 LLKKIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVG 120
LLKKIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVG
Sbjct: 61 LLKKIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVG 120
Query: 121 GYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYM 180
GYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYM
Sbjct: 121 GYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYM 180
Query: 181 CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKVVIRRLTGDEEEK 240
CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKVVIRRLTGDEEEK
Sbjct: 181 CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKVVIRRLTGDEEEK 240
Query: 241 EHKPIRPKIFIPRGRRLLRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGD 300
EHKPIRPKIFIPRGRRLLRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGD
Sbjct: 241 EHKPIRPKIFIPRGRRLLRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGD 300
Query: 301 VVEKGIERYFEMALEYYEKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFVFIP 360
VVEKGIERYFEMALEYYEKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFVFIP
Sbjct: 301 VVEKGIERYFEMALEYYEKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFVFIP 360
Query: 361 ILSAQYETQIGVVGRTGQKMLSRLLDDFEEKFRIIVMHHNLVPVPGVREIGYLEDAGNVL 420
ILSAQYETQIGVVGRTGQKMLSRLLDDFEEKFRIIVMHHNLVPVPGVREIGYLEDAGNVL
Sbjct: 361 ILSAQYETQIGVVGRTGQKMLSRLLDDFEEKFRIIVMHHNLVPVPGVREIGYLEDAGNVL 420
Query: 421 KIITDKKTELTLTGHGGNSNAVKVEKSPIINAGSISWELHRNPFGNSFNVIDIYEDMIVA 480
KIITDKKTELTLTGHGGNSNAVKVEKSPIINAGSISWELHRNPFGNSFNVIDIYEDMIVA
Sbjct: 421 KIITDKKTELTLTGHGGNSNAVKVEKSPIINAGSISWELHRNPFGNSFNVIDIYEDMIVA 480
Query: 481 FEIQATWGSRKLLGMWKIKSEIPWL 505
FEIQATWGSRKLLGMWKIKSEIPWL
Sbjct: 481 FEIQATWGSRKLLGMWKIKSEIPWL 505
>pir||F71230 hypothetical protein PH0104 - Pyrococcus horikoshii
>gi|3256490|dbj|BAA29173.1| (AP000001) 505aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 505
Score = 969 bits (2478), Expect = 0.0
Identities = 459/505 (90%), Positives = 487/505 (95%)
Query: 1 MMKMLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASY 60
MM MLIAHISDTHITNEVAFKSYAYDLI NEINT+PFDLV+HTGDVTNNGLREEYEHASY
Sbjct: 1 MMDMLIAHISDTHITNEVAFKSYAYDLIVNEINTKPFDLVVHTGDVTNNGLREEYEHASY 60
Query: 61 LLKKIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVG 120
L+KKIEKPL+V PGNHDARNVGYELFEKYIGPL GVYEF +GVIIWLDSTIPDLSDGRVG
Sbjct: 61 LIKKIEKPLVVVPGNHDARNVGYELFEKYIGPLYGVYEFDNGVIIWLDSTIPDLSDGRVG 120
Query: 121 GYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYM 180
GYKFKWLK KLE YSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLL+H+VTLYM
Sbjct: 121 GYKFKWLKEKLEAYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLTHEVTLYM 180
Query: 181 CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKVVIRRLTGDEEEK 240
CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKIT VKVVIRRLTGDEE K
Sbjct: 181 CGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITDKGVKVVIRRLTGDEESK 240
Query: 241 EHKPIRPKIFIPRGRRLLRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGD 300
EH PIRPKIFIPRGRRLLRIV +SESNVSDRVYFRKRTLENAI+AINEKYKPDIV+HCGD
Sbjct: 241 EHNPIRPKIFIPRGRRLLRIVQISESNVSDRVYFRKRTLENAIKAINEKYKPDIVIHCGD 300
Query: 301 VVEKGIERYFEMALEYYEKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFVFIP 360
VVEKGIERY+E A+EYYEKVK EKIIVPGHNDISYLGYELF+EYFGEPE++E GDFVFIP
Sbjct: 301 VVEKGIERYYEKAMEYYEKVKGEKIIVPGHNDISYLGYELFREYFGEPEVLELGDFVFIP 360
Query: 361 ILSAQYETQIGVVGRTGQKMLSRLLDDFEEKFRIIVMHHNLVPVPGVREIGYLEDAGNVL 420
ILSAQYETQIGVVGRTGQKMLSR+L++F EKFRI++MHHNLVPVPGV+EIGYLEDAGNVL
Sbjct: 361 ILSAQYETQIGVVGRTGQKMLSRMLEEFREKFRIVIMHHNLVPVPGVKEIGYLEDAGNVL 420
Query: 421 KIITDKKTELTLTGHGGNSNAVKVEKSPIINAGSISWELHRNPFGNSFNVIDIYEDMIVA 480
KIIT+ +TELTLTGHGGN++AVKVEKSPIINAGSISWELHRNPFGNSFN+IDIYEDM+VA
Sbjct: 421 KIITENETELTLTGHGGNTSAVKVEKSPIINAGSISWELHRNPFGNSFNIIDIYEDMVVA 480
Query: 481 FEIQATWGSRKLLGMWKIKSEIPWL 505
FEIQATWGSRK+LGMWKIKSEIPWL
Sbjct: 481 FEIQATWGSRKVLGMWKIKSEIPWL 505
>pir||C69097 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cpdA
homolog - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622852|gb|AAB86192.1| (AE000928)
transcriptional regulator Icc related protein
[Methanobacterium thermoautotrophicum]
Length = 262
Score = 170 bits (427), Expect = 3e-41
Identities = 92/229 (40%), Positives = 134/229 (58%), Gaps = 3/229 (1%)
Query: 2 MKMLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASYL 61
M+ IA ISD H E F + +++ DL+I +GD+T G EYE A+
Sbjct: 1 MEKKIAQISDVHF-GEKNFSDQLRKNLLHQLENENPDLIIVSGDLTTEGYSHEYELAAAF 59
Query: 62 LKKIEK--PLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRV 119
+ ++ PGNHDARNVG FEK IG V+ + +I LDS+ PD++DG++
Sbjct: 60 VDELRTITSTYTIPGNHDARNVGLIHFEKLIGRRKFVHHDSEFAVIGLDSSEPDINDGQI 119
Query: 120 GGYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLY 179
G + WL+ +LE KIV HHHL+P+P+TGRERN+L ++GD+L LL + V
Sbjct: 120 GMDQLDWLRKELERVPDHLCKIVTFHHHLLPIPNTGRERNILLDSGDLLKLLKEYGVDFV 179
Query: 180 MCGHKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKV 228
+ GHKHVPNV+ +E +V N+G A+ RK R S+N ++I D++ V
Sbjct: 180 LNGHKHVPNVWMIEGMVTLNSGTATTRKLRGETFPSHNQLRINDDRISV 228
Score = 84.3 bits (205), Expect = 3e-15
Identities = 61/246 (24%), Positives = 115/246 (45%), Gaps = 12/246 (4%)
Query: 261 VHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGDVVEKGIERYFEMALEYYEKV 320
VH E N SD++ RK L E PD+++ GD+ +G +E+A + +++
Sbjct: 11 VHFGEKNFSDQL--RKNLLHQL-----ENENPDLIIVSGDLTTEGYSHEYELAAAFVDEL 63
Query: 321 KA--EKIIVPGHNDISYLGYELFKEYFGEPEIVER-GDFVFIPILSAQYETQIGVVGRTG 377
+ +PG++D +G F++ G + V +F I + S++ + G +G
Sbjct: 64 RTITSTYTIPGNHDARNVGLIHFEKLIGRRKFVHHDSEFAVIGLDSSEPDINDGQIGMDQ 123
Query: 378 QKMLSRLLDDFEEKF-RIIVMHHNLVPVPGV-REIGYLEDAGNVLKIITDKKTELTLTGH 435
L + L+ + +I+ HH+L+P+P RE L D+G++LK++ + + L GH
Sbjct: 124 LDWLRKELERVPDHLCKIVTFHHHLLPIPNTGRERNILLDSGDLLKLLKEYGVDFVLNGH 183
Query: 436 GGNSNAVKVEKSPIINAGSISWELHRNPFGNSFNVIDIYEDMIVAFEIQATWGSRKLLGM 495
N +E +N+G+ + R S N + I +D I I GS + +
Sbjct: 184 KHVPNVWMIEGMVTLNSGTATTRKLRGETFPSHNQLRINDDRISVDLINTENGSVREIAS 243
Query: 496 WKIKSE 501
+ ++ E
Sbjct: 244 YSVRVE 249
>pir||A70360 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cpdA
homolog - Aquifex aeolicus >gi|2983283|gb|AAC06876.1|
(AE000702) putative protein [Aquifex aeolicus]
Length = 249
Score = 150 bits (375), Expect = 4e-35
Identities = 85/223 (38%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Query: 4 MLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASYLLK 63
M IAHISD H+ E +L+ +N + DL+I TGD+T+ G EY+ A L+
Sbjct: 1 MKIAHISDLHVKCEWYEDRLGNNLV-KYLNAQKPDLLIITGDLTDYGYYAEYKRAYSFLE 59
Query: 64 KIE-KPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVGGY 122
IE + +V PGNHDARN GYELFE++ G + YE + VII +DS++PD +G +G
Sbjct: 60 LIEVEKRVVVPGNHDARNEGYELFEEFFGTRMPYYEDEYMVIIGMDSSLPDREEGHIGRK 119
Query: 123 KFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYMCG 182
+K+L+ L++ K+KIVA HHH+VP+P TG + +L +AG+++ ++ V L + G
Sbjct: 120 GYKFLRETLKD-KGDKLKIVALHHHVVPIPATGSDLAILTDAGNLMKVVDELGVELVLTG 178
Query: 183 HKHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDK 225
HKH V+++ + AG A+ R+ + D S+ ++ + +K
Sbjct: 179 HKHKAWVWKLNETYYVTAGTATTRRLKAKDYPSFYMLYLEDEK 221
Score = 113 bits (279), Expect = 6e-24
Identities = 62/200 (31%), Positives = 116/200 (58%), Gaps = 5/200 (2%)
Query: 258 LRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGDVVEKGIERYFEMALEYY 317
++I H+S+ +V ++ R N ++ +N + KPD+++ GD+ + G ++ A +
Sbjct: 1 MKIAHISDLHVKCE-WYEDRLGNNLVKYLNAQ-KPDLLIITGDLTDYGYYAEYKRAYSFL 58
Query: 318 EKVKAEK-IIVPGHNDISYLGYELFKEYFGEPEIVERGDF-VFIPILSAQYETQIGVVGR 375
E ++ EK ++VPG++D GYELF+E+FG ++ V I + S+ + + G +GR
Sbjct: 59 ELIEVEKRVVVPGNHDARNEGYELFEEFFGTRMPYYEDEYMVIIGMDSSLPDREEGHIGR 118
Query: 376 TGQKMLSRLLDDFEEKFRIIVMHHNLVPVPGV-REIGYLEDAGNVLKIITDKKTELTLTG 434
G K L L D +K +I+ +HH++VP+P ++ L DAGN++K++ + EL LTG
Sbjct: 119 KGYKFLRETLKDKGDKLKIVALHHHVVPIPATGSDLAILTDAGNLMKVVDELGVELVLTG 178
Query: 435 HGGNSNAVKVEKSPIINAGS 454
H + K+ ++ + AG+
Sbjct: 179 HKHKAWVWKLNETYYVTAGT 198
>gi|11500006 lacZ expression regulatory protein (icc) [Archaeoglobus fulgidus]
>gi|7428147|pir||G69553 3',5'-cyclic-nucleotide
phosphodiesterase (EC 3.1.4.17) cpdA homolog -
Archaeoglobus fulgidus >gi|2650659|gb|AAB91233.1|
(AE001107) lacZ expression regulatory protein (icc)
[Archaeoglobus fulgidus]
Length = 372
Score = 146 bits (365), Expect = 5e-34
Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 5/245 (2%)
Query: 4 MLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASYLLK 63
M I HISD H E+ + + +IN DL++ TGD++ G+ E A L
Sbjct: 1 MRIVHISDLHFGEELIREKV--EKAVRQINEIEPDLLVITGDLSCWGIHSEMRDAYETLL 58
Query: 64 KIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVGGYK 123
++ I PGNHDARN+GYE F+ Y G ++ +I DST PDL DG +G +
Sbjct: 59 DLKPDYIAVPGNHDARNIGYEFFQLYFGETKKYWKNDVVSLIAADSTQPDLDDGYIGKEQ 118
Query: 124 FKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYMCGH 183
W+ +K+ + + I+A HHH+ P+P TGRERNVL +AG++++LL+++ ++ + GH
Sbjct: 119 RDWIVSKIRK---DRFNILALHHHIAPIPKTGRERNVLIDAGEMVELLIANGISAVLAGH 175
Query: 184 KHVPNVYRVEDLVVDNAGCASCRKTRKGDVNSYNIVKITKDKVKVVIRRLTGDEEEKEHK 243
+H+P R+ V +AG K ++YN+++I + + + +R + E E
Sbjct: 176 RHMPYSLRLMRTHVIHAGTLGSFKVLGMPDHNYNVIEIKDNTLTLKLRFVDYGEVEIGRY 235
Query: 244 PIRPK 248
I P+
Sbjct: 236 TINPE 240
Score = 99.5 bits (244), Expect = 8e-20
Identities = 73/250 (29%), Positives = 136/250 (54%), Gaps = 12/250 (4%)
Query: 258 LRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGDVVEKGIERYFEMALEYY 317
+RIVH+S+ + + + K +E A+R INE +PD++V GD+ GI A E
Sbjct: 1 MRIVHISDLHFGEELIREK--VEKAVRQINE-IEPDLLVITGDLSCWGIHSEMRDAYETL 57
Query: 318 EKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFV-FIPILSAQYETQIGVVGRT 376
+K + I VPG++D +GYE F+ YFGE + + D V I S Q + G +G+
Sbjct: 58 LDLKPDYIAVPGNHDARNIGYEFFQLYFGETKKYWKNDVVSLIAADSTQPDLDDGYIGKE 117
Query: 377 GQK-MLSRLLDDFEEKFRIIVMHHNLVPVPGV-REIGYLEDAGNVLKIITDKKTELTLTG 434
+ ++S++ D +F I+ +HH++ P+P RE L DAG +++++ L G
Sbjct: 118 QRDWIVSKIRKD---RFNILALHHHIAPIPKTGRERNVLIDAGEMVELLIANGISAVLAG 174
Query: 435 HGGNSNAVKVEKSPIINAGSI-SWELHRNPFGNSFNVIDIYEDMIVAFEIQATWGSRKLL 493
H ++++ ++ +I+AG++ S+++ P +++NVI+I +D + +++ +
Sbjct: 175 HRHMPYSLRLMRTHVIHAGTLGSFKVLGMP-DHNYNVIEI-KDNTLTLKLRFVDYGEVEI 232
Query: 494 GMWKIKSEIP 503
G + I E P
Sbjct: 233 GRYTINPETP 242
>pir||F69104 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cpdA
homolog MTH178 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621221|gb|AAB84684.1| (AE000805)
Icc related protein [Methanobacterium
thermoautotrophicum]
Length = 196
Score = 140 bits (350), Expect = 3e-32
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
Query: 4 MLIAHISDTHITNEVAFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREEYEHASYLLK 63
+LIAHISD H+ FK +IN D + TGD+T+NG E+ A+ L
Sbjct: 2 VLIAHISDLHV-GAPNFKEDILLEAIRQINKLKPDATVITGDLTDNGYYLEFLQAAEYLS 60
Query: 64 KIEKPLIVAPGNHDARNVGYELFEKYIGPLIGVYEFKDGVIIWLDSTIPDLSDGRVGGYK 123
++ P I PGNHDAR+VG E FE G + II LDS+ PDL G++G +
Sbjct: 61 DLKGPHIFVPGNHDARHVGNETFEDVFRYRRGTFVMDGLTIIGLDSSEPDLDYGKIGRSQ 120
Query: 124 FKWLKAKLEEYSHK-KIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLSHDVTLYMCG 182
W++ +L+ S + I+++A HHH++P+P TGRERNVL +AGD+L ++S L + G
Sbjct: 121 QIWMEDELDRASSRGHIRVIALHHHIIPVPKTGRERNVLADAGDILQSIISKGADLVISG 180
Query: 183 HKHVP 187
HKHVP
Sbjct: 181 HKHVP 185
Score = 95.2 bits (233), Expect = 2e-18
Identities = 64/187 (34%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 257 LLRIVHVSESNVSDRVYFRKRTLENAIRAINEKYKPDIVVHCGDVVEKGIERYFEMALEY 316
++ I H+S+ +V F++ L AIR IN K KPD V GD+ + G F A EY
Sbjct: 1 MVLIAHISDLHVG-APNFKEDILLEAIRQIN-KLKPDATVITGDLTDNGYYLEFLQAAEY 58
Query: 317 YEKVKAEKIIVPGHNDISYLGYELFKEYFGEPEIVERGDFV-----FIPILSAQYETQIG 371
+K I VPG++D ++G E F++ F RG FV I + S++ + G
Sbjct: 59 LSDLKGPHIFVPGNHDARHVGNETFEDVFR----YRRGTFVMDGLTIIGLDSSEPDLDYG 114
Query: 372 VVGRTGQKMLSRLLDDFEEK--FRIIVMHHNLVPVPGV-REIGYLEDAGNVLKIITDKKT 428
+GR+ Q + LD + R+I +HH+++PVP RE L DAG++L+ I K
Sbjct: 115 KIGRSQQIWMEDELDRASSRGHIRVIALHHHIIPVPKTGRERNVLADAGDILQSIISKGA 174
Query: 429 ELTLTGH 435
+L ++GH
Sbjct: 175 DLVISGH 181
>sp|P36650|ICC_ECOLI ICC PROTEIN >gi|7428142|pir||F65090 3',5'-cyclic-nucleotide
phosphodiesterase (EC 3.1.4.17) cpdA - Escherichia coli
(strain K-12) >gi|453396|dbj|BAA03989.1| (D16557) Icc
[Escherichia coli] >gi|1789410|gb|AAC76068.1| (AE000385)
regulator of lacZ [Escherichia coli K12]
Length = 275
Score = 74.1 bits (179), Expect = 3e-12
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 3 KMLIAHISDTHITNEV--------AFKSYAYDLIANEINTRPFDLVIHTGDVTNNGLREE 54
++ I I+DTH+ + ++SY L A + FDL++ TGD+ +
Sbjct: 14 RVRILQITDTHLFAQKHEALLGVNTWESYQAVLEAIRPHQHEFDLIVATGDLAQDQSSAA 73
Query: 55 YEHASYLLKKIEKPLIVAPGNHDARNVGYE-LFEKYIGPLIGVYEFKDGVIIWLDSTIPD 113
Y+H + + P + PGNHD + Y L + I P V+ + I+ LDS +
Sbjct: 74 YQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGEQWQILLLDSQVFG 133
Query: 114 LSDGRVGGYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTGRERNVLFNAGDVLDLLLS 173
+ G + ++ +WL+ KL + + ++ ++ HHH +P + +++ L NAG+ LD +L+
Sbjct: 134 VPHGELSEFQLEWLERKLAD-APERHTLLLLHHHPLPAGCSWLDQHSLRNAGE-LDTVLA 191
Query: 174 H--DVTLYMCGHKH 185
V +CGH H
Sbjct: 192 KFPHVKYLLCGHIH 205
>gb|AAA69200.1| (U28377) icc gene product [Escherichia coli]
Length = 231
Score = 69.5 bits (167), Expect = 9e-11
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 37 FDLVIHTGDVTNNGLREEYEHASYLLKKIEKPLIVAPGNHDARNVGYE-LFEKYIGPLIG 95
FDL++ TGD+ + Y+H + + P + PGNHD + Y L + I P
Sbjct: 12 FDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKR 71
Query: 96 VYEFKDGVIIWLDSTIPDLSDGRVGGYKFKWLKAKLEEYSHKKIKIVAAHHHLVPLPDTG 155
V+ + I+ LDS + + G + ++ +WL+ KL + + ++ ++ HHH +P +
Sbjct: 72 VFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLAD-APERHTLLLLHHHPLPAGCSW 130
Query: 156 RERNVLFNAGDVLDLLLSH--DVTLYMCGHKH 185
+++ L NAG+ LD +L+ V +CGH H
Sbjct: 131 LDQHSLRNAGE-LDTVLAKFPHVKYLLCGHIH 161
>pir||T35867 hypothetical protein SC9B1.22c - Streptomyces coelicolor
>gi|4691401|emb|CAB41568.1| (AL049727) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 273
Score = 69.5 bits (167), Expect = 9e-11
Identities = 60/215 (27%), Positives = 98/215 (44%), Gaps = 31/215 (14%)
Query: 4 MLIAHISDTHITNEVAFKSYAYDLIANEINTRP--FDLVIHTGDVTNNGLREEYEHASYL 61
+++AHISD H+ A + + + P D ++ TGD+ ++G EYE A+ +
Sbjct: 24 LVLAHISDLHLDGSPRATERA-ERVRERLWRLPGRVDALLVTGDIADHGTEAEYEEAARV 82
Query: 62 LKKIEK----PLIVAPGNHDARNVGYELFEKYI-------GPLIGVYEFKDGVIIWLDST 110
L + P++ PGNHD+R + K + GP V+ F G ++ DS+
Sbjct: 83 LGLRDGSAPFPVLTCPGNHDSRAP----YRKALLGRPAADGPANEVHVFDGGAVLMCDSS 138
Query: 111 IPDLSDGRVGGYKFKWLKAKLEEYSHKKIKIVAAHHHLV----PLPDTGRERNVLFNAGD 166
IP +G + G + W++A L+ ++A HH PLPD+ R R+ +
Sbjct: 139 IPGSDEGELDGETYDWIEASLDGLDDGLPALLAFHHPPTPVHHPLPDSYRLRH-----PE 193
Query: 167 VLDLLLSH--DVTLYMCGHKHVP--NVYRVEDLVV 197
L LL + + GH H P V+ LVV
Sbjct: 194 RLAALLERRPGIAGLITGHAHSPAATVFAGRPLVV 228
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199545313
Number of Sequences: 2977
Number of extensions: 9085850
Number of successful extensions: 19809
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19761
Number of HSP's gapped (non-prelim): 15
length of query: 505
length of database: 189,106,746
effective HSP length: 55
effective length of query: 450
effective length of database: 156,189,961
effective search space: 70285482450
effective search space used: 70285482450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)