BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2280 (PAB2280) DE:Hypothetical protein
         (272 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75197 hypothetical protein PAB2280 - Pyrococcus abyssi (st...   548  e-155
pir||D71230 hypothetical protein PH0102 - Pyrococcus horikoshii ...   463  e-129
gb|AAK42209.1| Hypothetical protein [Sulfolobus solfataricus]          71  1e-11

>pir||E75197 hypothetical protein PAB2280 - Pyrococcus abyssi (strain Orsay)
           >gi|5457537|emb|CAB49028.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 272
           
 Score =  548 bits (1396), Expect = e-155
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MCRILLAVGNGYRMRPLVEALIKASKDDPYKAARGRGNQHKDGWGYVLVSNGSIIHYKSS 60
           MCRILLAVGNGYRMRPLVEALIKASKDDPYKAARGRGNQHKDGWGYVLVSNGSIIHYKSS
Sbjct: 1   MCRILLAVGNGYRMRPLVEALIKASKDDPYKAARGRGNQHKDGWGYVLVSNGSIIHYKSS 60

Query: 61  KPIFEDEEANNLLEKLPDFGVLILHSRAASQGKVNSFNAQPFSYASPHGYQLYFMHNGDL 120
           KPIFEDEEANNLLEKLPDFGVLILHSRAASQGKVNSFNAQPFSYASPHGYQLYFMHNGDL
Sbjct: 61  KPIFEDEEANNLLEKLPDFGVLILHSRAASQGKVNSFNAQPFSYASPHGYQLYFMHNGDL 120

Query: 121 LKELLLEGLKLPKDKYEEVSDSYLAGLYLSLFIGSTSDEDIVERLALLKPTVRTSLNTGG 180
           LKELLLEGLKLPKDKYEEVSDSYLAGLYLSLFIGSTSDEDIVERLALLKPTVRTSLNTGG
Sbjct: 121 LKELLLEGLKLPKDKYEEVSDSYLAGLYLSLFIGSTSDEDIVERLALLKPTVRTSLNTGG 180

Query: 181 ILVTPGGEVKAFGTAYMSEEYLDDPLSKNYMRIMSFYSADLFAMMSSTLELYTFIPLDEV 240
           ILVTPGGEVKAFGTAYMSEEYLDDPLSKNYMRIMSFYSADLFAMMSSTLELYTFIPLDEV
Sbjct: 181 ILVTPGGEVKAFGTAYMSEEYLDDPLSKNYMRIMSFYSADLFAMMSSTLELYTFIPLDEV 240

Query: 241 ENGTAFVVSVNLEEEKFDVRKYGLSIEDITSP 272
           ENGTAFVVSVNLEEEKFDVRKYGLSIEDITSP
Sbjct: 241 ENGTAFVVSVNLEEEKFDVRKYGLSIEDITSP 272


>pir||D71230 hypothetical protein PH0102 - Pyrococcus horikoshii
           >gi|3256488|dbj|BAA29171.1| (AP000001) 271aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 271
           
 Score =  463 bits (1178), Expect = e-129
 Identities = 225/272 (82%), Positives = 248/272 (90%), Gaps = 1/272 (0%)

Query: 1   MCRILLAVGNGYRMRPLVEALIKASKDDPYKAARGRGNQHKDGWGYVLVSNGSIIHYKSS 60
           MCRILLAVGNGYRMRPLVEALIK+S++DPYKAARG+G+QHKDGWGYVLVS  SI+HYKSS
Sbjct: 1   MCRILLAVGNGYRMRPLVEALIKSSENDPYKAARGKGSQHKDGWGYVLVSRDSIVHYKSS 60

Query: 61  KPIFEDEEANNLLEKLPDFGVLILHSRAASQGKVNSFNAQPFSYASPHGYQLYFMHNGDL 120
           KPIFED+EA  L+  LP FG LILHSRAASQGKVNSFNAQPFSYASP+GYQLYFMHNGDL
Sbjct: 61  KPIFEDDEAKRLMNSLPSFGALILHSRAASQGKVNSFNAQPFSYASPYGYQLYFMHNGDL 120

Query: 121 LKELLLEGLKLPKDKYEEVSDSYLAGLYLSLFIGSTSDEDIVERLALLKPTVRTSLNTGG 180
           LKEL+LEGLKLPKDKYE+VSDSYLAG YLSLF+    D DIVERLALLKPTVRTSLNTGG
Sbjct: 121 LKELILEGLKLPKDKYEDVSDSYLAGFYLSLFVKGLDDRDIVERLALLKPTVRTSLNTGG 180

Query: 181 ILVTPGGEVKAFGTAYMSEEYLDDPLSKNYMRIMSFYSADLFAMMSSTLELYTFIPLDEV 240
           I++TP  EVKAFGTAYM+E+YL+DPLS+NYM+IMSFYSADLFA+MSSTLE YTFIPLDEV
Sbjct: 181 IMITPDQEVKAFGTAYMAEDYLNDPLSRNYMKIMSFYSADLFAVMSSTLERYTFIPLDEV 240

Query: 241 ENGTAFVVSVNLEEEKFDVRKYGLSIEDITSP 272
           ENGT F VSV+ +EEKFDV+KY LS  D TSP
Sbjct: 241 ENGTVFTVSVDFKEEKFDVKKYELS-TDATSP 271


>gb|AAK42209.1| Hypothetical protein [Sulfolobus solfataricus]
           Length = 228
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 63/229 (27%), Positives = 104/229 (44%), Gaps = 28/229 (12%)

Query: 1   MCRILLAVGNGYR-MRPLVEALIKASKDDPYKAARGRGNQHKDGWGYVLVSNGSIIHYKS 59
           MCR+L   G+    ++ L   L KAS +DP          H DGWG V +++ ++IHY+S
Sbjct: 1   MCRMLAYHGDDKEYLKRLTNCLAKASLNDPLT-----NETHGDGWGIVAIASNNLIHYRS 55

Query: 60  SKPIFEDEEANNLLEKLPDFGVLILHSRAASQGK-VNSFNAQPFSYASPHGYQLYFMHNG 118
             PIF+DE    +L  L     +I+H+R AS  + ++ + + P+  ++P    L+  HNG
Sbjct: 56  HLPIFKDENLEKILNLLDGEMKVIIHARQASDKRLISPYYSHPYLESTPKSI-LFLAHNG 114

Query: 119 DLLKELLLEGLKLPKDKYEEVSDSYLAGLYLSLFIGSTSDEDIVERLALLKPTVRTSLNT 178
            + K  L  G  L  D    V DS L   Y + +         ++ +  L+   +++LN 
Sbjct: 115 SVDKYKL--GNVLGIDPMLMV-DSELVAKYFATY--------SIKEIDKLQDVTQSALN- 162

Query: 179 GGILVTPGGEVKAFGTAYMSEEYLDDPLS------KNYMRIMSFYSADL 221
             +L+     +    T Y    Y  D +       K Y    + YS+ L
Sbjct: 163 --LLIMEINRIDRSSTIYFYNYYRKDRIKRKEEYYKLYFNKGAIYSSSL 209


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104786688
Number of Sequences: 2977
Number of extensions: 4505152
Number of successful extensions: 11732
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11730
Number of HSP's gapped (non-prelim): 3
length of query: 272
length of database: 189,106,746
effective HSP length: 57
effective length of query: 215
effective length of database: 154,992,987
effective search space: 33323492205
effective search space used: 33323492205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)