BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2286 (PAB2286) DE:Hypothetical protein
         (239 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75195 hypothetical protein PAB2286 - Pyrococcus abyssi (st...   483  e-136
pir||C71228 hypothetical protein PH0085 - Pyrococcus horikoshii ...   420  e-116
pir||B64468 hypothetical protein homolog MJ1347 - Methanococcus ...   168  8e-41
pir||D69014 conserved hypothetical protein MTH1108 - Methanobact...   143  1e-33
emb|CAC12080.1| (AL445066) transcription regulator (exsB) relate...   102  4e-21
sp|P77756|YBAX_ECOLI HYPOTHETICAL 25.5 KD PROTEIN IN HUPB-COF IN...    99  3e-20
dbj|BAB05963.1| (AP001514) aluminum resistance protein [Bacillus...    99  6e-20
gb|AAK40383.1| Transcription regulator (exsB) related protein [S...    99  6e-20
pir||C81417 probable transcription regulatory protein Cj0016 [im...    93  3e-18
pir||A71676 hypothetical protein RP694 - Rickettsia prowazekii >...    92  7e-18
pir||A69868 ykvJ protein - Bacillus subtilis >gi|2633743|emb|CAB...    91  1e-17
pir||F82208 exsB protein VC1366 [imported] - Vibrio cholerae (gr...    91  1e-17
gi|11498054 succinoglycan biosynthesis regulator (exsB) [Archaeo...    83  4e-15
pir||G64599 conserved hypothetical protein HP0639 - Helicobacter...    82  8e-15
pir||D71912 hypothetical protein jhp0582 - Helicobacter pylori (...    81  1e-14
pir||H70371 trans-regulatory protein ExsB - Aquifex aeolicus >gi...    80  2e-14
gb|AAG20938.1| (AE005160) succinoglycan biosynthesis; ExsB [Halo...    79  4e-14
pir||S75967 hypothetical protein - Synechocystis sp. (strain PCC...    79  5e-14
emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas putida]     78  9e-14
pir||E83522 conserved hypothetical protein PA0976 [imported] - P...    78  9e-14
pir||B82628 transcription regulator XF1858 [imported] - Xylella ...    75  1e-12
pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria ...    73  4e-12
pir||PC4440 aluminum tolerance protein - Arthrobacter viscosus  ...    72  7e-12
pir||E81189 aluminum resistance protein, probable NMB0525 [impor...    71  2e-11
gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae]              69  6e-11

>pir||H75195 hypothetical protein PAB2286 - Pyrococcus abyssi (strain Orsay)
           >gi|5457524|emb|CAB49015.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score =  483 bits (1230), Expect = e-136
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
           MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI
Sbjct: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60

Query: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL
Sbjct: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180
           DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL
Sbjct: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180

Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239
           LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV
Sbjct: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239


>pir||C71228 hypothetical protein PH0085 - Pyrococcus horikoshii
           >gi|3256471|dbj|BAA29154.1| (AP000001) 269aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 269
           
 Score =  420 bits (1067), Expect = e-116
 Identities = 199/239 (83%), Positives = 224/239 (93%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
           M+R VVLFSGGLDSTA LYWA +HYDEVIMLTINYGS+EE V NKVAEFFS+EL +PLKI
Sbjct: 31  MKRGVVLFSGGLDSTACLYWAKRHYDEVIMLTINYGSREESVMNKVAEFFSKELKIPLKI 90

Query: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           ++++FL+EFSK++GS LVEGNVP V+A ELE  E+AKETARSVW+PARN VLI +AASLL
Sbjct: 91  IRVNFLNEFSKLSGSALVEGNVPRVSASELEVIERAKETARSVWVPARNLVLISIAASLL 150

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180
           DALGGGDIIVGFNKEEGETFPDNTKEFV+R+N AL+YATMN+VRVVAPLIELDK+GIARL
Sbjct: 151 DALGGGDIIVGFNKEEGETFPDNTKEFVERVNKALEYATMNKVRVVAPLIELDKRGIARL 210

Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239
           LKEL AKYEYSNSCY+P+GFTEDGKPIHCGRCESCVRRHRGL+EGIGEDKTVYLVTPK+
Sbjct: 211 LKELGAKYEYSNSCYDPKGFTEDGKPIHCGRCESCVRRHRGLMEGIGEDKTVYLVTPKL 269


>pir||B64468 hypothetical protein homolog MJ1347 - Methanococcus jannaschii
           >gi|1591989|gb|AAB99356.1| (U67574) ExsB [Methanococcus
           jannaschii]
           Length = 235
           
 Score =  168 bits (420), Expect = 8e-41
 Identities = 96/237 (40%), Positives = 136/237 (56%), Gaps = 12/237 (5%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
           +A+ + SGGLDST     A     EV  +T NYG +  +     A+     L +   +V 
Sbjct: 5   KAITVLSGGLDSTVVTLIAKDLGYEVTAITFNYGQRAAKREINSAKKICEILGIEHIVVD 64

Query: 63  IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
           + F+ +F K   S + E  +P +   EL D EKA ET ++VW+PARN ++ G+A+   +A
Sbjct: 65  LPFVKQFGK--SSLITEKEIPTLKMEEL-DSEKAYETMKAVWVPARNVIMFGIASGFAEA 121

Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLK 182
           L    I +G NKEEG TFPDNT EFV+  N  L+Y T+N+V++ APL +  K+ I +L  
Sbjct: 122 LDAEKIFIGINKEEGVTFPDNTIEFVEAFNKVLEYGTLNKVKIEAPLYDKTKEEIVKLGA 181

Query: 183 ELNAK-----YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYL 234
           EL  K      +YS SCY+  G  ED   +HCG+CESC+RR R  +    EDKT Y+
Sbjct: 182 ELEKKLGVEVLKYSYSCYHDNG--EDF--LHCGKCESCMRRKRAFLMAGVEDKTKYI 234


>pir||D69014 conserved hypothetical protein MTH1108 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622210|gb|AAB85597.1| (AE000881) conserved protein
           [Methanobacterium thermoautotrophicum]
           >gi|3023053|gb|AAC12720.1| (AF039105) ORF2R
           [Methanobacterium thermoautotrophicum]
           Length = 222
           
 Score =  143 bits (358), Expect = 1e-33
 Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 16/233 (6%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
           RA+ + SGG+DS  +    +  Y E+  +T +YG +  R+  + A   S  L +    + 
Sbjct: 2   RAISILSGGMDSAVATALMMDEY-EIHAITFDYGQRSARMELEYARRLSEHLGIEHTTLD 60

Query: 63  IDFLHEFSKIAGSKLVEG-NVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
           + +L    ++ GS L  G ++P  +   L+D  +  ETAR VW+P RN V   +  S  +
Sbjct: 61  LQWL---GRLGGSVLTAGGDIPSPS--NLDDTVECLETARKVWVPGRNLVFTSIGVSFAE 115

Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLL 181
           A+  G +IVG++ EE ETFPDN++EF+D  N  L+  T++ VRVVAP+I + K+ I    
Sbjct: 116 AMDAGAVIVGWDLEEAETFPDNSEEFLDAFNRLLEIGTLDGVRVVAPVIGMTKREIVEAG 175

Query: 182 KELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL-IEGIGEDKTVY 233
            E+   +E + SCY        G  +HCG CESC+RR R   + GI +D T Y
Sbjct: 176 HEVGLPFELTYSCY-------AGDRVHCGVCESCMRRRRAFELAGI-DDPTEY 220


>emb|CAC12080.1| (AL445066) transcription regulator (exsB) related protein
           [Thermoplasma acidophilum]
           Length = 238
           
 Score =  102 bits (252), Expect = 4e-21
 Identities = 73/236 (30%), Positives = 116/236 (48%), Gaps = 21/236 (8%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
           ++AVVL SGGLDS+  L +A+    EV  ++ +YG +  R  N  +E  ++   V  KIV
Sbjct: 4   KKAVVLLSGGLDSSTVLAYAISLGYEVHAISFDYGQRHSREMNS-SEELAKYYGVDRKIV 62

Query: 62  KIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
            +D      +  G   +  ++ EV +R+LE      E     ++PARN + + +AA+  +
Sbjct: 63  HVDL-----RSIGKSALTDDI-EVPSRDLESIP---EEIPVTYVPARNTIFLSIAAAYAE 113

Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVR----VVAPLIELDKKGI 177
           ++G  DI +G N  +   +PD   E+ + +  AL   T   +R    +  PL  L K  I
Sbjct: 114 SIGSTDIFIGANAIDYSGYPDCRPEYFNAMEKALTLGTEIGLRKGMHINVPLQYLTKADI 173

Query: 178 ARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
            R+  +L   YE + SCY        G    CG C+SC+ R +G +E   ED   Y
Sbjct: 174 IRMGLKLGVPYEKTWSCYK-------GGEKACGECDSCLLRLKGFMEAGSEDPLEY 222


>sp|P77756|YBAX_ECOLI HYPOTHETICAL 25.5 KD PROTEIN IN HUPB-COF INTERGENIC REGION
           >gi|7449788|pir||D64774 ybaX protein - Escherichia coli
           >gi|1580715|dbj|BAA11648.1| (D82943) YbaX [Escherichia
           coli] >gi|1773128|gb|AAB40200.1| (U82664) similar to H.
           influenzae HI1191 [Escherichia coli]
           >gi|1786648|gb|AAC73547.1| (AE000150) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 231
           
 Score = 99.5 bits (244), Expect = 3e-20
 Identities = 73/236 (30%), Positives = 115/236 (47%), Gaps = 20/236 (8%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
           M+RAVV+FSGG DST  L  AL+ YDEV  +T +YG Q  R    VA   + +L     K
Sbjct: 1   MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYG-QRHRAEIDVARELALKLGARAHK 59

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
           ++ +  L+E   +A S L   ++P      + D+E   +   + ++P RN + + +AA  
Sbjct: 60  VLDVTLLNE---LAVSSLTRDSIP------VPDYEPEADGIPNTFVPGRNILFLTLAAIY 110

Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK---G 176
              +    +I G  + +   +PD   EFV  +N A+      ++R   PL+ +DK     
Sbjct: 111 AYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWA 170

Query: 177 IARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
           +A    +L+     + +CYN  GF  DG    CG C +C  R  GL   + +  TV
Sbjct: 171 LADYYGKLDLVRNETLTCYN--GFKGDG----CGHCAACNLRANGLNHYLADKPTV 220


>dbj|BAB05963.1| (AP001514) aluminum resistance protein [Bacillus halodurans]
           Length = 223
           
 Score = 98.7 bits (242), Expect = 6e-20
 Identities = 67/224 (29%), Positives = 114/224 (49%), Gaps = 21/224 (9%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
           ++AVV+FSGG DST  L+WALK +DEV  +T +YG Q      + A+  + +L V  +++
Sbjct: 6   KKAVVVFSGGQDSTTCLFWALKTFDEVATVTFDYG-QRHAEEIECAKEIAEQLGVSFRVL 64

Query: 62  KIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
            +  L++ ++ A ++       E+  ++ E+ E       S ++P RN + +  AA    
Sbjct: 65  DMTLLNQLTESALTR------EEIAVKDGENGE-----LPSTFVPGRNQLFLSFAAVYAK 113

Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLL 181
            +G   ++ G  + +   +PD    F+  +N  L  A  ++  +  PL+ LDK    +L 
Sbjct: 114 QIGARHLVTGVCETDYSGYPDCRDVFIKSLNVTLNLAMDDQFVIHTPLMWLDKAETWKLA 173

Query: 182 KELNA---KYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
            EL A     E + +CY+  G   DG    CG C +C+ R RGL
Sbjct: 174 DELGALDFVREKTLTCYH--GIRGDG----CGECPACMLRRRGL 211


>gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus
           solfataricus]
           Length = 464
           
 Score = 98.7 bits (242), Expect = 6e-20
 Identities = 67/218 (30%), Positives = 101/218 (45%), Gaps = 16/218 (7%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
           R +V+ SGGLDST +    L+   EV ++  NY  + E    +     +  L +PL  + 
Sbjct: 243 RVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEEKEREAVRKIAEYLQIPLLEIN 302

Query: 63  IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
            D    F  I  + L++G    V  R+ E+     E A   W+PARN +   V+ ++ +A
Sbjct: 303 TDL---FKIIGHATLIKGGGEIVKDRKGEE---GAEFAHE-WVPARNLIFFSVSLAIAEA 355

Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYAT--MNEVRVVAPLIELDKKGIARL 180
            G   I  G N EE   +PDN  EF+  +N    YAT     + ++ P+  L K  I +L
Sbjct: 356 YGYDAIASGINLEEAGAYPDNEMEFIRMLNKLSPYATGPNKRIEILMPVGNLVKHEIVKL 415

Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
             E+ A    + SCY       +G   HCG+C  C  R
Sbjct: 416 GYEIGAPLHLTWSCY-------EGGQKHCGKCGPCYMR 446


>pir||C81417 probable transcription regulatory protein Cj0016 [imported] -
           Campylobacter jejuni (strain NCTC 11168)
           >gi|6967521|emb|CAB72509.1| (AL139074) putative
           transcriptional regulatory protein [Campylobacter
           jejuni]
           Length = 224
           
 Score = 92.8 bits (227), Expect = 3e-18
 Identities = 70/235 (29%), Positives = 109/235 (45%), Gaps = 18/235 (7%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
           ++A+ + SGG+DST   Y A K   E+I L  +Y   E+R   K  E F +++   LK+ 
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALHFDY---EQRTQEKEKECF-KQICKALKVE 58

Query: 62  KIDFLH-EFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           K   L   F K  G   +     ++   EL       +T    ++P RN + + +A SL 
Sbjct: 59  KSYILDVSFIKDIGGNALTDKSIDIPKNEL----CTSDTPPITYVPFRNGIFLSIAGSLA 114

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVV--APLIELDKKGIA 178
           +      I +G  +E+G  +PD T EF+ +    +   T    +V    PL+ L+K  I 
Sbjct: 115 EKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVCIKTPLVRLNKAKIV 174

Query: 179 RLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
            L  + N   E + SCY     +ED     CG C+SC+ R RG  +   +DK  Y
Sbjct: 175 ELALKENVPLELTWSCYE----SEDEA---CGECDSCLLRLRGFEKAGFKDKIKY 222


>pir||A71676 hypothetical protein RP694 - Rickettsia prowazekii
           >gi|3861231|emb|CAA15131.1| (AJ235272) unknown
           [Rickettsia prowazekii]
           Length = 227
           
 Score = 91.7 bits (224), Expect = 7e-18
 Identities = 62/223 (27%), Positives = 99/223 (43%), Gaps = 17/223 (7%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
           M+++V L SGG DS   L  A +   E+  ++ NYG +      KV E   +      KI
Sbjct: 1   MKKSVNLLSGGTDSATVLAIASEMCYEIYAMSFNYGQRNNAELRKVKELIKKYNVKQHKI 60

Query: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           V ID         GS L + N+               E     ++PARN + +  A    
Sbjct: 61  VDIDL----RAFGGSALTDDNID---VPYYHGINALPEIVPVTYVPARNTIFLSYAVGFA 113

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
           + +G  DI +G +  +   +PD   E++      +  AT       ++ + APLI++ K+
Sbjct: 114 EVIGSQDIFIGVHTSDSANYPDCCPEYIQSFEKMVNLATNMGVQGKKITIHAPLIDMTKE 173

Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
            I R   +L   Y+ + SCY+P   TED   + CG C +C+ R
Sbjct: 174 QIIRTGLKLGVDYKNTISCYSP---TED--DLSCGNCLACIIR 211


>pir||A69868 ykvJ protein - Bacillus subtilis >gi|2633743|emb|CAB13245.1|
           (Z99111) similar to hypothetical proteins [Bacillus
           subtilis]
           Length = 219
           
 Score = 91.3 bits (223), Expect = 1e-17
 Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 28/228 (12%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYG---SQEERVTNKVAEFFSRELNVPLK 59
           +A+V+FSGG DST  L WALK ++EV  +T +Y    SQE  V   +AE    +L V   
Sbjct: 5   KAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAE----KLGVKNH 60

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
           ++ +  L++ +            P    R   + E       S ++P RN V +  A+ L
Sbjct: 61  LLDMSLLNQLA------------PNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASIL 108

Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIAR 179
              +G   II G  + +   +PD   EFV   N  +  A      +  PL+ L+K    +
Sbjct: 109 AYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWK 168

Query: 180 LLKELNAKYEYSN---SCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
           L  EL A     N   +CYN  G   DG    CG C +C  R +G  E
Sbjct: 169 LADELGALDFVKNNTLTCYN--GIIADG----CGECPACHLRSKGYEE 210


>pir||F82208 exsB protein VC1366 [imported] - Vibrio cholerae (group O1 strain
           N16961) >gi|9655860|gb|AAF94524.1| (AE004216) exsB
           protein [Vibrio cholerae]
           Length = 231
           
 Score = 91.3 bits (223), Expect = 1e-17
 Identities = 70/226 (30%), Positives = 113/226 (49%), Gaps = 21/226 (9%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
           M++AVV+FSGG DST  L  ALK +DEV  +T +YG Q  ++  +VA+  +++L V   K
Sbjct: 1   MKKAVVVFSGGQDSTTCLVQALKEFDEVHAITFDYG-QRHKLEIEVAQQLAKQLGVTAHK 59

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
           ++ +  L+E   +A S L   ++P   + EL+          + ++P RN + + +A   
Sbjct: 60  VMDVSLLNE---LAISSLTRDDIP--VSHELQ-----ANGLPNSFVPGRNILFLTLAGIY 109

Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK---G 176
              +G   +I G  + +   +PD   EFV  +N AL       + +  PL+ L+K     
Sbjct: 110 AYQIGATTVITGVCETDFSGYPDCRDEFVQAMNQALAKGMDLPLMIRTPLMWLNKAETWA 169

Query: 177 IARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
           +A  L  L+     + +CYN  G   DG    CG C +C  R  GL
Sbjct: 170 LADQLGALDLVRHQTLTCYN--GLIGDG----CGECPACGLRQAGL 209


>gi|11498054 succinoglycan biosynthesis regulator (exsB) [Archaeoglobus
           fulgidus] >gi|7449795|pir||B69305 succinoglycan
           biosynthesis regulator (exsB) homolog - Archaeoglobus
           fulgidus >gi|2650185|gb|AAB90792.1| (AE001074)
           succinoglycan biosynthesis regulator (exsB)
           [Archaeoglobus fulgidus]
           Length = 239
           
 Score = 82.7 bits (201), Expect = 4e-15
 Identities = 64/217 (29%), Positives = 100/217 (45%), Gaps = 18/217 (8%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
           +AV+L SGG+DS+  LY+ L    EV  LT  YG +  +     AE  ++   V    V 
Sbjct: 2   KAVMLLSGGIDSSTLLYYLLDGGYEVHALTFFYGQKHSKEIES-AEKVAKAAKVRHLKVD 60

Query: 63  IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
           I  +H+     G+   E  VP+    E        E  R   +P RN +L+ +AA     
Sbjct: 61  ISTIHDLISY-GALTGEEEVPKAFYSE--------EVQRRTIVPNRNMILLSIAAGYAVK 111

Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-NEVRVVAPLIELDKKGIARLL 181
           +G  ++    +  +   +PD  KEFV  +++A+  A +   V V AP +++ K  I RL 
Sbjct: 112 IGAKEVHYAAHLSDYSIYPDCRKEFVKALDTAVYLANIWTPVEVRAPFVDMTKADIVRLG 171

Query: 182 KELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
            +L   YE + SCY       +G    C  C +C+ R
Sbjct: 172 LKLGVPYELTWSCY-------EGGDRPCLSCGTCLER 201


>pir||G64599 conserved hypothetical protein HP0639 - Helicobacter pylori
           (strain 26695) >gi|2313760|gb|AAD07701.1| (AE000578)
           conserved hypothetical protein [Helicobacter pylori
           26695]
           Length = 226
           
 Score = 81.5 bits (198), Expect = 8e-15
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 12/223 (5%)

Query: 5   VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVKID 64
           V+ FSGG DST    WA K + +V ++  +Y +Q+  V  + A+  +  L +P +I+ +D
Sbjct: 7   VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65

Query: 65  FLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDALG 124
           FL   ++ A  K     +    A+        K+   S ++P RN + I +  S    LG
Sbjct: 66  FLENITRSALFKNSNDLIGHSHAQN-------KDLPNS-FVPNRNAIFITLLHSYAQKLG 117

Query: 125 GGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLKE- 183
             +I +G ++ +   +PD  ++F+  I  AL   +   ++++ PL+ L+K    ++ K+ 
Sbjct: 118 ASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDL 177

Query: 184 --LNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
             L+   + +++CY  +          C +C +C  R +G  E
Sbjct: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220


>pir||D71912 hypothetical protein jhp0582 - Helicobacter pylori (strain J99)
           >gi|4155143|gb|AAD06173.1| (AE001491) putative
           [Helicobacter pylori J99]
           Length = 225
           
 Score = 80.8 bits (196), Expect = 1e-14
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 14/224 (6%)

Query: 5   VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVKID 64
           V+ FSGG DST    WA K + +V ++  +Y +Q+  V  + A+  +  L +P +I+ +D
Sbjct: 7   VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65

Query: 65  FLHEFSKIAGSKLVEGNVPEVTARELEDFEKAK-ETARSVWIPARNFVLIGVAASLLDAL 123
           FL   +  A  K          + +L     A+ +   + ++P RN + I +  S    L
Sbjct: 66  FLENITHSALFK---------NSNDLMGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKL 116

Query: 124 GGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLKE 183
           G  +I +G ++ +   +PD  ++F+  I  AL   +   +++V PL+ L K    ++ K+
Sbjct: 117 GASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKIVTPLMFLSKAQEFQMAKD 176

Query: 184 LNAK---YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
           L       + +++CY  +          C +C +C  R +G  E
Sbjct: 177 LGVLDLIIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220


>pir||H70371 trans-regulatory protein ExsB - Aquifex aeolicus
           >gi|2983380|gb|AAC06966.1| (AE000709) trans-regulatory
           protein ExsB [Aquifex aeolicus]
           Length = 218
           
 Score = 80.0 bits (194), Expect = 2e-14
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%)

Query: 5   VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK-IVKI 63
           +VL SGG+DS   L+ A + + +V  ++ +YG Q  +V  K A+  ++   V    IV++
Sbjct: 8   IVLLSGGMDSATLLWLAKREFKKVYAISFDYG-QRHKVELKYAKELAKLAEVEDHFIVQV 66

Query: 64  DFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDAL 123
            F   ++ + GS L++ +V EV   E  + E    T     +P RN + + +A++  D L
Sbjct: 67  PF---YTSLKGSALIDESV-EVPKGEYPENEPPVTT-----VPMRNLIFLSIASAFADNL 117

Query: 124 GGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYAT------MNEVRVVAPLIELDKKGI 177
               I +G +  +   +PD   EF+    +A+   +         + V AP + + K+ I
Sbjct: 118 EVNYIGIGVHALD-TPYPDCRPEFITAAEAAINAGSTFVAKKKERMHVYAPFLGMSKRDI 176

Query: 178 ARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
           A L KEL   +E + SCY        G    CG C +C++R   L
Sbjct: 177 ALLGKELGVPFEKTYSCYM-------GTEPPCGECPTCIQREEAL 214


>gb|AAG20938.1| (AE005160) succinoglycan biosynthesis; ExsB [Halobacterium sp.
           NRC-1]
           Length = 229
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 64/233 (27%), Positives = 101/233 (42%), Gaps = 26/233 (11%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
           +RAVVL SGG+DS  +   A     EV ML  +YG Q E   ++ A   +  L       
Sbjct: 4   KRAVVLASGGMDSATAAAVAHNAGYEVYMLHTSYGQQTEHKEHECATAQAAALGA----- 58

Query: 62  KIDFLH----EFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAA 117
             DFLH      SKI  S L +  +       + D +   +   + ++P RN  L+ +A 
Sbjct: 59  -ADFLHLTTDHLSKIGASSLTDDEM------AVADADMESDEIPTSYVPFRNANLLAMAT 111

Query: 118 SLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM--NEVRVVAPLIELDKK 175
           S  +A     + +G + E+   +PD    F +     +   T    E+ + AP ++  K 
Sbjct: 112 SYAEANDCEAVFIGAHSEDFSGYPDCQPAFFEAFQQTVAAGTKPDTEISINAPFVDWSKT 171

Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGE 228
            IA    EL   YE++ SCY  +          CG C++C  R +   + +GE
Sbjct: 172 DIAERGLELGVPYEHTWSCYRAEAPA-------CGTCDACAFRLQA-FQNLGE 216


>pir||S75967 hypothetical protein - Synechocystis sp. (strain PCC 6803)
           >gi|1001327|dbj|BAA10814.1| (D64006) ExsB [Synechocystis
           sp.]
           Length = 271
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 65/229 (28%), Positives = 99/229 (42%), Gaps = 24/229 (10%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI- 60
           + AVVL SGGLDS      A +    VI L+ NYG + +R     A+   + L +P    
Sbjct: 42  KTAVVLLSGGLDSATVAAIAKREGYRVIALSFNYGQRHDRELRAAADIV-QALGIPEHFS 100

Query: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           + +D     ++  GS L +        + L       +   S ++P RN V I +  SL 
Sbjct: 101 INLD----LAQWGGSSLTD------RQQTLPQTGVEPDIIPSTYVPGRNTVFIALGLSLA 150

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
           +A G   + +G N  +   +PD   E++         ++        ++++APLIEL K 
Sbjct: 151 EAKGAEAVFLGINAIDYSGYPDCRPEYLATYQQLAALSSKVGVEGRPIQLLAPLIELSKV 210

Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
            I     EL      + SCY        G    CGRC+SC  R + LIE
Sbjct: 211 DIVHKALELGVPIAQTWSCY-------AGGEEPCGRCDSCRLRDQALIE 252


>emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas putida]
           Length = 224
           
 Score = 78.0 bits (189), Expect = 9e-14
 Identities = 69/240 (28%), Positives = 101/240 (41%), Gaps = 28/240 (11%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNV-PLKI 60
           +RAV+L SGGLDS   +  A         ++ +YG +     N  A   +R+L V   K+
Sbjct: 4   KRAVILLSGGLDSATVVAMAKAEGYSCYTMSFDYGQRHRAELNAAARV-ARDLGVVEHKV 62

Query: 61  VKIDFLHEFSKIAGSKLVEGN--VPEVTARELEDFEKAKETARSVWIPARNFVLIGVAAS 118
           + ++       I GS L + +  VPE             E     ++PARN V + +A  
Sbjct: 63  IGLNL----DGIGGSALTDSSIDVPEAPG----------EGIPVTYVPARNTVFLSLALG 108

Query: 119 LLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEV-----RVVAPLIELD 173
             + L   DI +G N  +   +PD   EFV+        AT   V     R+ APL  + 
Sbjct: 109 WAEVLEARDIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGQGFRIQAPLQNMS 168

Query: 174 KKGIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
           K  I +        Y  + SCY      +DG+   CG+C+SC  R  G      ED T Y
Sbjct: 169 KAQIVQAGMARGVDYSLTVSCYQAD---DDGRA--CGKCDSCRLRADGFKAAGIEDPTRY 223


>pir||E83522 conserved hypothetical protein PA0976 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9946884|gb|AAG04365.1|AE004531_2 (AE004531)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 224
           
 Score = 78.0 bits (189), Expect = 9e-14
 Identities = 68/238 (28%), Positives = 101/238 (41%), Gaps = 24/238 (10%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNV-PLKI 60
           ++AV+L SGGLDS   +  A         ++ +YG Q  R   + AE  +R+L V   K+
Sbjct: 4   KKAVILLSGGLDSATVVAMAKADGYACYTMSFDYG-QRHRAELQAAERVARQLGVIEHKV 62

Query: 61  VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
           + +D     + + GS L + ++           E   E     ++PARN V + +A    
Sbjct: 63  IGLDL----NGMGGSALTDESIAVP--------ESPSEGIPVTYVPARNTVFLSLALGWA 110

Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
           + L   DI +G N  +   +PD   EFV+        AT      N  R+ APL  L K 
Sbjct: 111 EVLDARDIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGNGFRIQAPLQYLSKA 170

Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
            I +        Y  + SCY      E G+   CG+C+SC  R  G       D T Y
Sbjct: 171 QIIQAGVARGVDYGLTVSCYQAD---EQGRA--CGKCDSCRLRADGFAAAGISDPTPY 223


>pir||B82628 transcription regulator XF1858 [imported] - Xylella fastidiosa
           (strain 9a5c) >gi|9106947|gb|AAF84664.1|AE004007_3
           (AE004007) transcriptional regulator [Xylella
           fastidiosa]
           Length = 254
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 27/244 (11%)

Query: 1   MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
           M++AVVL SGG+DS      A      V  L+I YG +     +      +R LNV   K
Sbjct: 25  MKKAVVLLSGGMDSAVVTAIAQSQGFMVHALSIRYGQRHTSELDAAVRI-ARVLNVAAHK 83

Query: 60  IVKIDFLHEFSKIAGSKLVEG-NVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAAS 118
           +V +D       I GS L +   +P+   + +             ++PARN +++ +A  
Sbjct: 84  VVDVDL----RSIGGSALTDDIEIPDAGGKGIP----------VTYVPARNTIMLSLALG 129

Query: 119 LLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELD 173
             + +G  DI  G N  +   +PD   +F+    +    AT       ++ V APL  L 
Sbjct: 130 WAEVIGAADIFCGVNAVDYSGYPDCRPQFITAFETLANLATKVGVEGTQLHVHAPLQFLS 189

Query: 174 KKGIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
           K  I          +  + SCY       DG+   CGRC++C  R  G  +    D T Y
Sbjct: 190 KAEIVHEGVLHGVDFGLTVSCYRAD---VDGRA--CGRCDACKLRAAGFADAGVADPTRY 244

Query: 234 LVTP 237
           +  P
Sbjct: 245 MELP 248


>pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7379427|emb|CAB83989.1|
           (AL162754) hypothetical protein NMA0702 [Neisseria
           meningitidis Z2491]
           Length = 219
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 66/240 (27%), Positives = 104/240 (42%), Gaps = 33/240 (13%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
           ++A+V+FSGG DST  L  A++ Y  + V  +T  YG Q   V  + A + +++L V   
Sbjct: 4   QKALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYG-QRHAVELERARWIAQDLGVKQT 62

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARS----VWIPARNFVLIGV 115
           ++ +  + +                +T   L D   A ETA +     ++  RN + +  
Sbjct: 63  VLDLSLMRQ----------------ITHNALMDDTAAIETAENGVPNTFVDGRNALFLLY 106

Query: 116 AASLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
           AA      G   II G  + +   +PD    FV  +N  L  A   + ++  PL+ L K 
Sbjct: 107 AAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166

Query: 176 GIARLLKELNAK---YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
               L  E+ A     E +++CYN       G    C  C SC+ R RGL E +   K V
Sbjct: 167 QTWALADEMGALDYIREQTHTCYN-------GIVGGCRECPSCILRERGLAEYLESKKAV 219


>pir||PC4440 aluminum tolerance protein - Arthrobacter viscosus  (fragment)
           Length = 172
           
 Score = 71.8 bits (173), Expect = 7e-12
 Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 3   RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
           +AVV+FSGG DST  L+WA++ ++EV  +T +Y +Q   +  + A+  ++EL +   I+ 
Sbjct: 6   KAVVVFSGGQDSTTCLFWAMERFEEVEAVTFDY-NQRHSLEIECAQKIAKELGITHHILD 64

Query: 63  IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
           +  L++ +  A ++       ++   + ED E       S ++P RN + +  A  L   
Sbjct: 65  MSLLNQLAPNALTR------SDIAVEDGEDGE-----LPSTFVPGRNLLFLSFAGVLASQ 113

Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
           +G   I+ G  + +   +PD    F+  +N  L  +      +  PL+ L+K+
Sbjct: 114 IGAKHIVTGVCETDFSGYPDCRDVFIKSLNVTLNLSMDQSFVIDTPLMWLNKE 166


>pir||E81189 aluminum resistance protein, probable NMB0525 [imported] -
           Neisseria meningitidis (group B strain MD58)
           >gi|7225750|gb|AAF40955.1| (AE002408) aluminum
           resistance protein, putative [Neisseria meningitidis
           MC58]
           Length = 219
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 66/240 (27%), Positives = 104/240 (42%), Gaps = 33/240 (13%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
           ++A+V+FSGG DST  L  A++ Y  + V  +T  YG Q   V  + A + +++L V   
Sbjct: 4   QQALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYG-QRHAVELERARWIAQDLGVKQT 62

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARS----VWIPARNFVLIGV 115
           ++ +  + +                +T   L D   A ETA +     ++  RN + +  
Sbjct: 63  VLDLSLMRQ----------------ITHNALMDDTAAIETAENGVPNTFVDGRNALFLLY 106

Query: 116 AASLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
           AA      G   II G  + +   +PD    FV  +N  L  A   + ++  PL+ L K 
Sbjct: 107 AAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166

Query: 176 GIARLLKE---LNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
               L  E   L+   E +++CYN       G    C  C SC+ R RGL E +   K V
Sbjct: 167 QTWALADEMGVLDYIREQTHTCYN-------GIVGGCRECPSCILRERGLAEYLESKKAV 219


>gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae]
           Length = 227
           
 Score = 68.7 bits (165), Expect = 6e-11
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 25/226 (11%)

Query: 2   RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
           R+A+V+FSGG DST  L+ A+  Y  + +  +T  YG Q   +  + A   +++L +   
Sbjct: 10  RKAIVIFSGGQDSTTCLFQAIAEYGKENIEAITFQYG-QRHAIELEKARTIAQDLGIKQT 68

Query: 60  IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
           ++    +     I  + L++         E    E+ +    + ++  RN + +  AA  
Sbjct: 69  LIDTSVM---KAITHNALMD---------EQAHIEQKENELPNTFVDGRNALFLLYAAIY 116

Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIAR 179
               G  DII G  + +   +PD    F+  +N  L  A   +  +  PL+ L K    +
Sbjct: 117 AKGQGIQDIITGVCETDFSGYPDCRDVFIKSMNVTLNLAMDYQFNIKTPLMYLTKAQTWQ 176

Query: 180 LLKELNA---KYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
           L  EL       +++++CY       +G    C +C SC+ R++GL
Sbjct: 177 LADELGVLDYVQKHTHTCY-------EGIEGGCRKCPSCILRNKGL 215


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89593282
Number of Sequences: 2977
Number of extensions: 3748041
Number of successful extensions: 11171
Number of sequences better than 1.0e-10: 25
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11123
Number of HSP's gapped (non-prelim): 25
length of query: 239
length of database: 189,106,746
effective HSP length: 55
effective length of query: 184
effective length of database: 156,189,961
effective search space: 28738952824
effective search space used: 28738952824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)