BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2286 (PAB2286) DE:Hypothetical protein
(239 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75195 hypothetical protein PAB2286 - Pyrococcus abyssi (st... 483 e-136
pir||C71228 hypothetical protein PH0085 - Pyrococcus horikoshii ... 420 e-116
pir||B64468 hypothetical protein homolog MJ1347 - Methanococcus ... 168 8e-41
pir||D69014 conserved hypothetical protein MTH1108 - Methanobact... 143 1e-33
emb|CAC12080.1| (AL445066) transcription regulator (exsB) relate... 102 4e-21
sp|P77756|YBAX_ECOLI HYPOTHETICAL 25.5 KD PROTEIN IN HUPB-COF IN... 99 3e-20
dbj|BAB05963.1| (AP001514) aluminum resistance protein [Bacillus... 99 6e-20
gb|AAK40383.1| Transcription regulator (exsB) related protein [S... 99 6e-20
pir||C81417 probable transcription regulatory protein Cj0016 [im... 93 3e-18
pir||A71676 hypothetical protein RP694 - Rickettsia prowazekii >... 92 7e-18
pir||A69868 ykvJ protein - Bacillus subtilis >gi|2633743|emb|CAB... 91 1e-17
pir||F82208 exsB protein VC1366 [imported] - Vibrio cholerae (gr... 91 1e-17
gi|11498054 succinoglycan biosynthesis regulator (exsB) [Archaeo... 83 4e-15
pir||G64599 conserved hypothetical protein HP0639 - Helicobacter... 82 8e-15
pir||D71912 hypothetical protein jhp0582 - Helicobacter pylori (... 81 1e-14
pir||H70371 trans-regulatory protein ExsB - Aquifex aeolicus >gi... 80 2e-14
gb|AAG20938.1| (AE005160) succinoglycan biosynthesis; ExsB [Halo... 79 4e-14
pir||S75967 hypothetical protein - Synechocystis sp. (strain PCC... 79 5e-14
emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas putida] 78 9e-14
pir||E83522 conserved hypothetical protein PA0976 [imported] - P... 78 9e-14
pir||B82628 transcription regulator XF1858 [imported] - Xylella ... 75 1e-12
pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria ... 73 4e-12
pir||PC4440 aluminum tolerance protein - Arthrobacter viscosus ... 72 7e-12
pir||E81189 aluminum resistance protein, probable NMB0525 [impor... 71 2e-11
gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae] 69 6e-11
>pir||H75195 hypothetical protein PAB2286 - Pyrococcus abyssi (strain Orsay)
>gi|5457524|emb|CAB49015.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 483 bits (1230), Expect = e-136
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI
Sbjct: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
Query: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL
Sbjct: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180
DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL
Sbjct: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180
Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239
LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV
Sbjct: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239
>pir||C71228 hypothetical protein PH0085 - Pyrococcus horikoshii
>gi|3256471|dbj|BAA29154.1| (AP000001) 269aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 269
Score = 420 bits (1067), Expect = e-116
Identities = 199/239 (83%), Positives = 224/239 (93%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
M+R VVLFSGGLDSTA LYWA +HYDEVIMLTINYGS+EE V NKVAEFFS+EL +PLKI
Sbjct: 31 MKRGVVLFSGGLDSTACLYWAKRHYDEVIMLTINYGSREESVMNKVAEFFSKELKIPLKI 90
Query: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
++++FL+EFSK++GS LVEGNVP V+A ELE E+AKETARSVW+PARN VLI +AASLL
Sbjct: 91 IRVNFLNEFSKLSGSALVEGNVPRVSASELEVIERAKETARSVWVPARNLVLISIAASLL 150
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARL 180
DALGGGDIIVGFNKEEGETFPDNTKEFV+R+N AL+YATMN+VRVVAPLIELDK+GIARL
Sbjct: 151 DALGGGDIIVGFNKEEGETFPDNTKEFVERVNKALEYATMNKVRVVAPLIELDKRGIARL 210
Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYLVTPKV 239
LKEL AKYEYSNSCY+P+GFTEDGKPIHCGRCESCVRRHRGL+EGIGEDKTVYLVTPK+
Sbjct: 211 LKELGAKYEYSNSCYDPKGFTEDGKPIHCGRCESCVRRHRGLMEGIGEDKTVYLVTPKL 269
>pir||B64468 hypothetical protein homolog MJ1347 - Methanococcus jannaschii
>gi|1591989|gb|AAB99356.1| (U67574) ExsB [Methanococcus
jannaschii]
Length = 235
Score = 168 bits (420), Expect = 8e-41
Identities = 96/237 (40%), Positives = 136/237 (56%), Gaps = 12/237 (5%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
+A+ + SGGLDST A EV +T NYG + + A+ L + +V
Sbjct: 5 KAITVLSGGLDSTVVTLIAKDLGYEVTAITFNYGQRAAKREINSAKKICEILGIEHIVVD 64
Query: 63 IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
+ F+ +F K S + E +P + EL D EKA ET ++VW+PARN ++ G+A+ +A
Sbjct: 65 LPFVKQFGK--SSLITEKEIPTLKMEEL-DSEKAYETMKAVWVPARNVIMFGIASGFAEA 121
Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLK 182
L I +G NKEEG TFPDNT EFV+ N L+Y T+N+V++ APL + K+ I +L
Sbjct: 122 LDAEKIFIGINKEEGVTFPDNTIEFVEAFNKVLEYGTLNKVKIEAPLYDKTKEEIVKLGA 181
Query: 183 ELNAK-----YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVYL 234
EL K +YS SCY+ G ED +HCG+CESC+RR R + EDKT Y+
Sbjct: 182 ELEKKLGVEVLKYSYSCYHDNG--EDF--LHCGKCESCMRRKRAFLMAGVEDKTKYI 234
>pir||D69014 conserved hypothetical protein MTH1108 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622210|gb|AAB85597.1| (AE000881) conserved protein
[Methanobacterium thermoautotrophicum]
>gi|3023053|gb|AAC12720.1| (AF039105) ORF2R
[Methanobacterium thermoautotrophicum]
Length = 222
Score = 143 bits (358), Expect = 1e-33
Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 16/233 (6%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
RA+ + SGG+DS + + Y E+ +T +YG + R+ + A S L + +
Sbjct: 2 RAISILSGGMDSAVATALMMDEY-EIHAITFDYGQRSARMELEYARRLSEHLGIEHTTLD 60
Query: 63 IDFLHEFSKIAGSKLVEG-NVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
+ +L ++ GS L G ++P + L+D + ETAR VW+P RN V + S +
Sbjct: 61 LQWL---GRLGGSVLTAGGDIPSPS--NLDDTVECLETARKVWVPGRNLVFTSIGVSFAE 115
Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLL 181
A+ G +IVG++ EE ETFPDN++EF+D N L+ T++ VRVVAP+I + K+ I
Sbjct: 116 AMDAGAVIVGWDLEEAETFPDNSEEFLDAFNRLLEIGTLDGVRVVAPVIGMTKREIVEAG 175
Query: 182 KELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL-IEGIGEDKTVY 233
E+ +E + SCY G +HCG CESC+RR R + GI +D T Y
Sbjct: 176 HEVGLPFELTYSCY-------AGDRVHCGVCESCMRRRRAFELAGI-DDPTEY 220
>emb|CAC12080.1| (AL445066) transcription regulator (exsB) related protein
[Thermoplasma acidophilum]
Length = 238
Score = 102 bits (252), Expect = 4e-21
Identities = 73/236 (30%), Positives = 116/236 (48%), Gaps = 21/236 (8%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
++AVVL SGGLDS+ L +A+ EV ++ +YG + R N +E ++ V KIV
Sbjct: 4 KKAVVLLSGGLDSSTVLAYAISLGYEVHAISFDYGQRHSREMNS-SEELAKYYGVDRKIV 62
Query: 62 KIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
+D + G + ++ EV +R+LE E ++PARN + + +AA+ +
Sbjct: 63 HVDL-----RSIGKSALTDDI-EVPSRDLESIP---EEIPVTYVPARNTIFLSIAAAYAE 113
Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVR----VVAPLIELDKKGI 177
++G DI +G N + +PD E+ + + AL T +R + PL L K I
Sbjct: 114 SIGSTDIFIGANAIDYSGYPDCRPEYFNAMEKALTLGTEIGLRKGMHINVPLQYLTKADI 173
Query: 178 ARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
R+ +L YE + SCY G CG C+SC+ R +G +E ED Y
Sbjct: 174 IRMGLKLGVPYEKTWSCYK-------GGEKACGECDSCLLRLKGFMEAGSEDPLEY 222
>sp|P77756|YBAX_ECOLI HYPOTHETICAL 25.5 KD PROTEIN IN HUPB-COF INTERGENIC REGION
>gi|7449788|pir||D64774 ybaX protein - Escherichia coli
>gi|1580715|dbj|BAA11648.1| (D82943) YbaX [Escherichia
coli] >gi|1773128|gb|AAB40200.1| (U82664) similar to H.
influenzae HI1191 [Escherichia coli]
>gi|1786648|gb|AAC73547.1| (AE000150) orf, hypothetical
protein [Escherichia coli K12]
Length = 231
Score = 99.5 bits (244), Expect = 3e-20
Identities = 73/236 (30%), Positives = 115/236 (47%), Gaps = 20/236 (8%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
M+RAVV+FSGG DST L AL+ YDEV +T +YG Q R VA + +L K
Sbjct: 1 MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYG-QRHRAEIDVARELALKLGARAHK 59
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
++ + L+E +A S L ++P + D+E + + ++P RN + + +AA
Sbjct: 60 VLDVTLLNE---LAVSSLTRDSIP------VPDYEPEADGIPNTFVPGRNILFLTLAAIY 110
Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK---G 176
+ +I G + + +PD EFV +N A+ ++R PL+ +DK
Sbjct: 111 AYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWA 170
Query: 177 IARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
+A +L+ + +CYN GF DG CG C +C R GL + + TV
Sbjct: 171 LADYYGKLDLVRNETLTCYN--GFKGDG----CGHCAACNLRANGLNHYLADKPTV 220
>dbj|BAB05963.1| (AP001514) aluminum resistance protein [Bacillus halodurans]
Length = 223
Score = 98.7 bits (242), Expect = 6e-20
Identities = 67/224 (29%), Positives = 114/224 (49%), Gaps = 21/224 (9%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
++AVV+FSGG DST L+WALK +DEV +T +YG Q + A+ + +L V +++
Sbjct: 6 KKAVVVFSGGQDSTTCLFWALKTFDEVATVTFDYG-QRHAEEIECAKEIAEQLGVSFRVL 64
Query: 62 KIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLD 121
+ L++ ++ A ++ E+ ++ E+ E S ++P RN + + AA
Sbjct: 65 DMTLLNQLTESALTR------EEIAVKDGENGE-----LPSTFVPGRNQLFLSFAAVYAK 113
Query: 122 ALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLL 181
+G ++ G + + +PD F+ +N L A ++ + PL+ LDK +L
Sbjct: 114 QIGARHLVTGVCETDYSGYPDCRDVFIKSLNVTLNLAMDDQFVIHTPLMWLDKAETWKLA 173
Query: 182 KELNA---KYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
EL A E + +CY+ G DG CG C +C+ R RGL
Sbjct: 174 DELGALDFVREKTLTCYH--GIRGDG----CGECPACMLRRRGL 211
>gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus
solfataricus]
Length = 464
Score = 98.7 bits (242), Expect = 6e-20
Identities = 67/218 (30%), Positives = 101/218 (45%), Gaps = 16/218 (7%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
R +V+ SGGLDST + L+ EV ++ NY + E + + L +PL +
Sbjct: 243 RVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEEKEREAVRKIAEYLQIPLLEIN 302
Query: 63 IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
D F I + L++G V R+ E+ E A W+PARN + V+ ++ +A
Sbjct: 303 TDL---FKIIGHATLIKGGGEIVKDRKGEE---GAEFAHE-WVPARNLIFFSVSLAIAEA 355
Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYAT--MNEVRVVAPLIELDKKGIARL 180
G I G N EE +PDN EF+ +N YAT + ++ P+ L K I +L
Sbjct: 356 YGYDAIASGINLEEAGAYPDNEMEFIRMLNKLSPYATGPNKRIEILMPVGNLVKHEIVKL 415
Query: 181 LKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
E+ A + SCY +G HCG+C C R
Sbjct: 416 GYEIGAPLHLTWSCY-------EGGQKHCGKCGPCYMR 446
>pir||C81417 probable transcription regulatory protein Cj0016 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967521|emb|CAB72509.1| (AL139074) putative
transcriptional regulatory protein [Campylobacter
jejuni]
Length = 224
Score = 92.8 bits (227), Expect = 3e-18
Identities = 70/235 (29%), Positives = 109/235 (45%), Gaps = 18/235 (7%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
++A+ + SGG+DST Y A K E+I L +Y E+R K E F +++ LK+
Sbjct: 3 KKALCIISGGMDSTLCAYLAKKEGYEIIALHFDY---EQRTQEKEKECF-KQICKALKVE 58
Query: 62 KIDFLH-EFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
K L F K G + ++ EL +T ++P RN + + +A SL
Sbjct: 59 KSYILDVSFIKDIGGNALTDKSIDIPKNEL----CTSDTPPITYVPFRNGIFLSIAGSLA 114
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVV--APLIELDKKGIA 178
+ I +G +E+G +PD T EF+ + + T +V PL+ L+K I
Sbjct: 115 EKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVCIKTPLVRLNKAKIV 174
Query: 179 RLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
L + N E + SCY +ED CG C+SC+ R RG + +DK Y
Sbjct: 175 ELALKENVPLELTWSCYE----SEDEA---CGECDSCLLRLRGFEKAGFKDKIKY 222
>pir||A71676 hypothetical protein RP694 - Rickettsia prowazekii
>gi|3861231|emb|CAA15131.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 227
Score = 91.7 bits (224), Expect = 7e-18
Identities = 62/223 (27%), Positives = 99/223 (43%), Gaps = 17/223 (7%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI 60
M+++V L SGG DS L A + E+ ++ NYG + KV E + KI
Sbjct: 1 MKKSVNLLSGGTDSATVLAIASEMCYEIYAMSFNYGQRNNAELRKVKELIKKYNVKQHKI 60
Query: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
V ID GS L + N+ E ++PARN + + A
Sbjct: 61 VDIDL----RAFGGSALTDDNID---VPYYHGINALPEIVPVTYVPARNTIFLSYAVGFA 113
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
+ +G DI +G + + +PD E++ + AT ++ + APLI++ K+
Sbjct: 114 EVIGSQDIFIGVHTSDSANYPDCCPEYIQSFEKMVNLATNMGVQGKKITIHAPLIDMTKE 173
Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
I R +L Y+ + SCY+P TED + CG C +C+ R
Sbjct: 174 QIIRTGLKLGVDYKNTISCYSP---TED--DLSCGNCLACIIR 211
>pir||A69868 ykvJ protein - Bacillus subtilis >gi|2633743|emb|CAB13245.1|
(Z99111) similar to hypothetical proteins [Bacillus
subtilis]
Length = 219
Score = 91.3 bits (223), Expect = 1e-17
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYG---SQEERVTNKVAEFFSRELNVPLK 59
+A+V+FSGG DST L WALK ++EV +T +Y SQE V +AE +L V
Sbjct: 5 KAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAE----KLGVKNH 60
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
++ + L++ + P R + E S ++P RN V + A+ L
Sbjct: 61 LLDMSLLNQLA------------PNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASIL 108
Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIAR 179
+G II G + + +PD EFV N + A + PL+ L+K +
Sbjct: 109 AYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWK 168
Query: 180 LLKELNAKYEYSN---SCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
L EL A N +CYN G DG CG C +C R +G E
Sbjct: 169 LADELGALDFVKNNTLTCYN--GIIADG----CGECPACHLRSKGYEE 210
>pir||F82208 exsB protein VC1366 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9655860|gb|AAF94524.1| (AE004216) exsB
protein [Vibrio cholerae]
Length = 231
Score = 91.3 bits (223), Expect = 1e-17
Identities = 70/226 (30%), Positives = 113/226 (49%), Gaps = 21/226 (9%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
M++AVV+FSGG DST L ALK +DEV +T +YG Q ++ +VA+ +++L V K
Sbjct: 1 MKKAVVVFSGGQDSTTCLVQALKEFDEVHAITFDYG-QRHKLEIEVAQQLAKQLGVTAHK 59
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
++ + L+E +A S L ++P + EL+ + ++P RN + + +A
Sbjct: 60 VMDVSLLNE---LAISSLTRDDIP--VSHELQ-----ANGLPNSFVPGRNILFLTLAGIY 109
Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK---G 176
+G +I G + + +PD EFV +N AL + + PL+ L+K
Sbjct: 110 AYQIGATTVITGVCETDFSGYPDCRDEFVQAMNQALAKGMDLPLMIRTPLMWLNKAETWA 169
Query: 177 IARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
+A L L+ + +CYN G DG CG C +C R GL
Sbjct: 170 LADQLGALDLVRHQTLTCYN--GLIGDG----CGECPACGLRQAGL 209
>gi|11498054 succinoglycan biosynthesis regulator (exsB) [Archaeoglobus
fulgidus] >gi|7449795|pir||B69305 succinoglycan
biosynthesis regulator (exsB) homolog - Archaeoglobus
fulgidus >gi|2650185|gb|AAB90792.1| (AE001074)
succinoglycan biosynthesis regulator (exsB)
[Archaeoglobus fulgidus]
Length = 239
Score = 82.7 bits (201), Expect = 4e-15
Identities = 64/217 (29%), Positives = 100/217 (45%), Gaps = 18/217 (8%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
+AV+L SGG+DS+ LY+ L EV LT YG + + AE ++ V V
Sbjct: 2 KAVMLLSGGIDSSTLLYYLLDGGYEVHALTFFYGQKHSKEIES-AEKVAKAAKVRHLKVD 60
Query: 63 IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
I +H+ G+ E VP+ E E R +P RN +L+ +AA
Sbjct: 61 ISTIHDLISY-GALTGEEEVPKAFYSE--------EVQRRTIVPNRNMILLSIAAGYAVK 111
Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-NEVRVVAPLIELDKKGIARLL 181
+G ++ + + +PD KEFV +++A+ A + V V AP +++ K I RL
Sbjct: 112 IGAKEVHYAAHLSDYSIYPDCRKEFVKALDTAVYLANIWTPVEVRAPFVDMTKADIVRLG 171
Query: 182 KELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRR 218
+L YE + SCY +G C C +C+ R
Sbjct: 172 LKLGVPYELTWSCY-------EGGDRPCLSCGTCLER 201
>pir||G64599 conserved hypothetical protein HP0639 - Helicobacter pylori
(strain 26695) >gi|2313760|gb|AAD07701.1| (AE000578)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 226
Score = 81.5 bits (198), Expect = 8e-15
Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 5 VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVKID 64
V+ FSGG DST WA K + +V ++ +Y +Q+ V + A+ + L +P +I+ +D
Sbjct: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65
Query: 65 FLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDALG 124
FL ++ A K + A+ K+ S ++P RN + I + S LG
Sbjct: 66 FLENITRSALFKNSNDLIGHSHAQN-------KDLPNS-FVPNRNAIFITLLHSYAQKLG 117
Query: 125 GGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLKE- 183
+I +G ++ + +PD ++F+ I AL + ++++ PL+ L+K ++ K+
Sbjct: 118 ASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDL 177
Query: 184 --LNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
L+ + +++CY + C +C +C R +G E
Sbjct: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
>pir||D71912 hypothetical protein jhp0582 - Helicobacter pylori (strain J99)
>gi|4155143|gb|AAD06173.1| (AE001491) putative
[Helicobacter pylori J99]
Length = 225
Score = 80.8 bits (196), Expect = 1e-14
Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 14/224 (6%)
Query: 5 VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVKID 64
V+ FSGG DST WA K + +V ++ +Y +Q+ V + A+ + L +P +I+ +D
Sbjct: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65
Query: 65 FLHEFSKIAGSKLVEGNVPEVTARELEDFEKAK-ETARSVWIPARNFVLIGVAASLLDAL 123
FL + A K + +L A+ + + ++P RN + I + S L
Sbjct: 66 FLENITHSALFK---------NSNDLMGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKL 116
Query: 124 GGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLKE 183
G +I +G ++ + +PD ++F+ I AL + +++V PL+ L K ++ K+
Sbjct: 117 GASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKIVTPLMFLSKAQEFQMAKD 176
Query: 184 LNAK---YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
L + +++CY + C +C +C R +G E
Sbjct: 177 LGVLDLIIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
>pir||H70371 trans-regulatory protein ExsB - Aquifex aeolicus
>gi|2983380|gb|AAC06966.1| (AE000709) trans-regulatory
protein ExsB [Aquifex aeolicus]
Length = 218
Score = 80.0 bits (194), Expect = 2e-14
Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 5 VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK-IVKI 63
+VL SGG+DS L+ A + + +V ++ +YG Q +V K A+ ++ V IV++
Sbjct: 8 IVLLSGGMDSATLLWLAKREFKKVYAISFDYG-QRHKVELKYAKELAKLAEVEDHFIVQV 66
Query: 64 DFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDAL 123
F ++ + GS L++ +V EV E + E T +P RN + + +A++ D L
Sbjct: 67 PF---YTSLKGSALIDESV-EVPKGEYPENEPPVTT-----VPMRNLIFLSIASAFADNL 117
Query: 124 GGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYAT------MNEVRVVAPLIELDKKGI 177
I +G + + +PD EF+ +A+ + + V AP + + K+ I
Sbjct: 118 EVNYIGIGVHALD-TPYPDCRPEFITAAEAAINAGSTFVAKKKERMHVYAPFLGMSKRDI 176
Query: 178 ARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
A L KEL +E + SCY G CG C +C++R L
Sbjct: 177 ALLGKELGVPFEKTYSCYM-------GTEPPCGECPTCIQREEAL 214
>gb|AAG20938.1| (AE005160) succinoglycan biosynthesis; ExsB [Halobacterium sp.
NRC-1]
Length = 229
Score = 79.2 bits (192), Expect = 4e-14
Identities = 64/233 (27%), Positives = 101/233 (42%), Gaps = 26/233 (11%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIV 61
+RAVVL SGG+DS + A EV ML +YG Q E ++ A + L
Sbjct: 4 KRAVVLASGGMDSATAAAVAHNAGYEVYMLHTSYGQQTEHKEHECATAQAAALGA----- 58
Query: 62 KIDFLH----EFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAA 117
DFLH SKI S L + + + D + + + ++P RN L+ +A
Sbjct: 59 -ADFLHLTTDHLSKIGASSLTDDEM------AVADADMESDEIPTSYVPFRNANLLAMAT 111
Query: 118 SLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM--NEVRVVAPLIELDKK 175
S +A + +G + E+ +PD F + + T E+ + AP ++ K
Sbjct: 112 SYAEANDCEAVFIGAHSEDFSGYPDCQPAFFEAFQQTVAAGTKPDTEISINAPFVDWSKT 171
Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGE 228
IA EL YE++ SCY + CG C++C R + + +GE
Sbjct: 172 DIAERGLELGVPYEHTWSCYRAEAPA-------CGTCDACAFRLQA-FQNLGE 216
>pir||S75967 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001327|dbj|BAA10814.1| (D64006) ExsB [Synechocystis
sp.]
Length = 271
Score = 78.8 bits (191), Expect = 5e-14
Identities = 65/229 (28%), Positives = 99/229 (42%), Gaps = 24/229 (10%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKI- 60
+ AVVL SGGLDS A + VI L+ NYG + +R A+ + L +P
Sbjct: 42 KTAVVLLSGGLDSATVAAIAKREGYRVIALSFNYGQRHDRELRAAADIV-QALGIPEHFS 100
Query: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
+ +D ++ GS L + + L + S ++P RN V I + SL
Sbjct: 101 INLD----LAQWGGSSLTD------RQQTLPQTGVEPDIIPSTYVPGRNTVFIALGLSLA 150
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
+A G + +G N + +PD E++ ++ ++++APLIEL K
Sbjct: 151 EAKGAEAVFLGINAIDYSGYPDCRPEYLATYQQLAALSSKVGVEGRPIQLLAPLIELSKV 210
Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
I EL + SCY G CGRC+SC R + LIE
Sbjct: 211 DIVHKALELGVPIAQTWSCY-------AGGEEPCGRCDSCRLRDQALIE 252
>emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas putida]
Length = 224
Score = 78.0 bits (189), Expect = 9e-14
Identities = 69/240 (28%), Positives = 101/240 (41%), Gaps = 28/240 (11%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNV-PLKI 60
+RAV+L SGGLDS + A ++ +YG + N A +R+L V K+
Sbjct: 4 KRAVILLSGGLDSATVVAMAKAEGYSCYTMSFDYGQRHRAELNAAARV-ARDLGVVEHKV 62
Query: 61 VKIDFLHEFSKIAGSKLVEGN--VPEVTARELEDFEKAKETARSVWIPARNFVLIGVAAS 118
+ ++ I GS L + + VPE E ++PARN V + +A
Sbjct: 63 IGLNL----DGIGGSALTDSSIDVPEAPG----------EGIPVTYVPARNTVFLSLALG 108
Query: 119 LLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEV-----RVVAPLIELD 173
+ L DI +G N + +PD EFV+ AT V R+ APL +
Sbjct: 109 WAEVLEARDIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGQGFRIQAPLQNMS 168
Query: 174 KKGIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
K I + Y + SCY +DG+ CG+C+SC R G ED T Y
Sbjct: 169 KAQIVQAGMARGVDYSLTVSCYQAD---DDGRA--CGKCDSCRLRADGFKAAGIEDPTRY 223
>pir||E83522 conserved hypothetical protein PA0976 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946884|gb|AAG04365.1|AE004531_2 (AE004531)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 224
Score = 78.0 bits (189), Expect = 9e-14
Identities = 68/238 (28%), Positives = 101/238 (41%), Gaps = 24/238 (10%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNV-PLKI 60
++AV+L SGGLDS + A ++ +YG Q R + AE +R+L V K+
Sbjct: 4 KKAVILLSGGLDSATVVAMAKADGYACYTMSFDYG-QRHRAELQAAERVARQLGVIEHKV 62
Query: 61 VKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLL 120
+ +D + + GS L + ++ E E ++PARN V + +A
Sbjct: 63 IGLDL----NGMGGSALTDESIAVP--------ESPSEGIPVTYVPARNTVFLSLALGWA 110
Query: 121 DALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELDKK 175
+ L DI +G N + +PD EFV+ AT N R+ APL L K
Sbjct: 111 EVLDARDIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGNGFRIQAPLQYLSKA 170
Query: 176 GIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
I + Y + SCY E G+ CG+C+SC R G D T Y
Sbjct: 171 QIIQAGVARGVDYGLTVSCYQAD---EQGRA--CGKCDSCRLRADGFAAAGISDPTPY 223
>pir||B82628 transcription regulator XF1858 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106947|gb|AAF84664.1|AE004007_3
(AE004007) transcriptional regulator [Xylella
fastidiosa]
Length = 254
Score = 74.5 bits (180), Expect = 1e-12
Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 27/244 (11%)
Query: 1 MRRAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPL-K 59
M++AVVL SGG+DS A V L+I YG + + +R LNV K
Sbjct: 25 MKKAVVLLSGGMDSAVVTAIAQSQGFMVHALSIRYGQRHTSELDAAVRI-ARVLNVAAHK 83
Query: 60 IVKIDFLHEFSKIAGSKLVEG-NVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAAS 118
+V +D I GS L + +P+ + + ++PARN +++ +A
Sbjct: 84 VVDVDL----RSIGGSALTDDIEIPDAGGKGIP----------VTYVPARNTIMLSLALG 129
Query: 119 LLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATM-----NEVRVVAPLIELD 173
+ +G DI G N + +PD +F+ + AT ++ V APL L
Sbjct: 130 WAEVIGAADIFCGVNAVDYSGYPDCRPQFITAFETLANLATKVGVEGTQLHVHAPLQFLS 189
Query: 174 KKGIARLLKELNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTVY 233
K I + + SCY DG+ CGRC++C R G + D T Y
Sbjct: 190 KAEIVHEGVLHGVDFGLTVSCYRAD---VDGRA--CGRCDACKLRAAGFADAGVADPTRY 244
Query: 234 LVTP 237
+ P
Sbjct: 245 MELP 248
>pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379427|emb|CAB83989.1|
(AL162754) hypothetical protein NMA0702 [Neisseria
meningitidis Z2491]
Length = 219
Score = 72.6 bits (175), Expect = 4e-12
Identities = 66/240 (27%), Positives = 104/240 (42%), Gaps = 33/240 (13%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
++A+V+FSGG DST L A++ Y + V +T YG Q V + A + +++L V
Sbjct: 4 QKALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYG-QRHAVELERARWIAQDLGVKQT 62
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARS----VWIPARNFVLIGV 115
++ + + + +T L D A ETA + ++ RN + +
Sbjct: 63 VLDLSLMRQ----------------ITHNALMDDTAAIETAENGVPNTFVDGRNALFLLY 106
Query: 116 AASLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
AA G II G + + +PD FV +N L A + ++ PL+ L K
Sbjct: 107 AAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166
Query: 176 GIARLLKELNAK---YEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
L E+ A E +++CYN G C C SC+ R RGL E + K V
Sbjct: 167 QTWALADEMGALDYIREQTHTCYN-------GIVGGCRECPSCILRERGLAEYLESKKAV 219
>pir||PC4440 aluminum tolerance protein - Arthrobacter viscosus (fragment)
Length = 172
Score = 71.8 bits (173), Expect = 7e-12
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 3 RAVVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVK 62
+AVV+FSGG DST L+WA++ ++EV +T +Y +Q + + A+ ++EL + I+
Sbjct: 6 KAVVVFSGGQDSTTCLFWAMERFEEVEAVTFDY-NQRHSLEIECAQKIAKELGITHHILD 64
Query: 63 IDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDA 122
+ L++ + A ++ ++ + ED E S ++P RN + + A L
Sbjct: 65 MSLLNQLAPNALTR------SDIAVEDGEDGE-----LPSTFVPGRNLLFLSFAGVLASQ 113
Query: 123 LGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
+G I+ G + + +PD F+ +N L + + PL+ L+K+
Sbjct: 114 IGAKHIVTGVCETDFSGYPDCRDVFIKSLNVTLNLSMDQSFVIDTPLMWLNKE 166
>pir||E81189 aluminum resistance protein, probable NMB0525 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225750|gb|AAF40955.1| (AE002408) aluminum
resistance protein, putative [Neisseria meningitidis
MC58]
Length = 219
Score = 70.6 bits (170), Expect = 2e-11
Identities = 66/240 (27%), Positives = 104/240 (42%), Gaps = 33/240 (13%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
++A+V+FSGG DST L A++ Y + V +T YG Q V + A + +++L V
Sbjct: 4 QQALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYG-QRHAVELERARWIAQDLGVKQT 62
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARS----VWIPARNFVLIGV 115
++ + + + +T L D A ETA + ++ RN + +
Sbjct: 63 VLDLSLMRQ----------------ITHNALMDDTAAIETAENGVPNTFVDGRNALFLLY 106
Query: 116 AASLLDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKK 175
AA G II G + + +PD FV +N L A + ++ PL+ L K
Sbjct: 107 AAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166
Query: 176 GIARLLKE---LNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIEGIGEDKTV 232
L E L+ E +++CYN G C C SC+ R RGL E + K V
Sbjct: 167 QTWALADEMGVLDYIREQTHTCYN-------GIVGGCRECPSCILRERGLAEYLESKKAV 219
>gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae]
Length = 227
Score = 68.7 bits (165), Expect = 6e-11
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 2 RRAVVLFSGGLDSTASLYWALKHY--DEVIMLTINYGSQEERVTNKVAEFFSRELNVPLK 59
R+A+V+FSGG DST L+ A+ Y + + +T YG Q + + A +++L +
Sbjct: 10 RKAIVIFSGGQDSTTCLFQAIAEYGKENIEAITFQYG-QRHAIELEKARTIAQDLGIKQT 68
Query: 60 IVKIDFLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASL 119
++ + I + L++ E E+ + + ++ RN + + AA
Sbjct: 69 LIDTSVM---KAITHNALMD---------EQAHIEQKENELPNTFVDGRNALFLLYAAIY 116
Query: 120 LDALGGGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIAR 179
G DII G + + +PD F+ +N L A + + PL+ L K +
Sbjct: 117 AKGQGIQDIITGVCETDFSGYPDCRDVFIKSMNVTLNLAMDYQFNIKTPLMYLTKAQTWQ 176
Query: 180 LLKELNA---KYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGL 222
L EL +++++CY +G C +C SC+ R++GL
Sbjct: 177 LADELGVLDYVQKHTHTCY-------EGIEGGCRKCPSCILRNKGL 215
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89593282
Number of Sequences: 2977
Number of extensions: 3748041
Number of successful extensions: 11171
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11123
Number of HSP's gapped (non-prelim): 25
length of query: 239
length of database: 189,106,746
effective HSP length: 55
effective length of query: 184
effective length of database: 156,189,961
effective search space: 28738952824
effective search space used: 28738952824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)