BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2287 (PAB2287) DE:Hypothetical protein
         (551 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75195 hypothetical protein PAB2287 - Pyrococcus abyssi (st...  1148  0.0

>pir||D75195 hypothetical protein PAB2287 - Pyrococcus abyssi (strain Orsay)
           >gi|5457520|emb|CAB49011.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 551
           
 Score = 1148 bits (2936), Expect = 0.0
 Identities = 551/551 (100%), Positives = 551/551 (100%)

Query: 1   MKKRFLVPFVIFISLVIMALLIKNEPCIQNIKSETATITVSRPVTTTVTMTKTTTKTVTM 60
           MKKRFLVPFVIFISLVIMALLIKNEPCIQNIKSETATITVSRPVTTTVTMTKTTTKTVTM
Sbjct: 1   MKKRFLVPFVIFISLVIMALLIKNEPCIQNIKSETATITVSRPVTTTVTMTKTTTKTVTM 60

Query: 61  TKTIPVTKTNEIVRTVTATITKSAIMTKTRILTLTLTTIKKPPEIKYMEIFPNKTPDDKI 120
           TKTIPVTKTNEIVRTVTATITKSAIMTKTRILTLTLTTIKKPPEIKYMEIFPNKTPDDKI
Sbjct: 61  TKTIPVTKTNEIVRTVTATITKSAIMTKTRILTLTLTTIKKPPEIKYMEIFPNKTPDDKI 120

Query: 121 TTFKLSFYIIGNGTIEGKVIVTPVYYPNLNIEYEKQRVFKISGGGFHKINIPINGGKEYF 180
           TTFKLSFYIIGNGTIEGKVIVTPVYYPNLNIEYEKQRVFKISGGGFHKINIPINGGKEYF
Sbjct: 121 TTFKLSFYIIGNGTIEGKVIVTPVYYPNLNIEYEKQRVFKISGGGFHKINIPINGGKEYF 180

Query: 181 VTIEACNEVGCSKKEMKTPYYREYNNLAKELKEKGIIISAVYMPHSASYFCQEAEEEPLL 240
           VTIEACNEVGCSKKEMKTPYYREYNNLAKELKEKGIIISAVYMPHSASYFCQEAEEEPLL
Sbjct: 181 VTIEACNEVGCSKKEMKTPYYREYNNLAKELKEKGIIISAVYMPHSASYFCQEAEEEPLL 240

Query: 241 GCFEDTSLDIVQWKHIDWANGHGISVFWVDWTMLAWTSSKWRTLEVTRKLLEKNMTIGIM 300
           GCFEDTSLDIVQWKHIDWANGHGISVFWVDWTMLAWTSSKWRTLEVTRKLLEKNMTIGIM
Sbjct: 241 GCFEDTSLDIVQWKHIDWANGHGISVFWVDWTMLAWTSSKWRTLEVTRKLLEKNMTIGIM 300

Query: 301 IGPISFTEIPIDLARHLGEYLEIVEEASKFMNYPSYYKIGGRPALFIWSEVVFSNRGNFY 360
           IGPISFTEIPIDLARHLGEYLEIVEEASKFMNYPSYYKIGGRPALFIWSEVVFSNRGNFY
Sbjct: 301 IGPISFTEIPIDLARHLGEYLEIVEEASKFMNYPSYYKIGGRPALFIWSEVVFSNRGNFY 360

Query: 361 RKVYEVVKNQTGSCPYIIADLLPRIGYNFIIPGFSSFKEWYMWAITRKDDGGDVYIGGYT 420
           RKVYEVVKNQTGSCPYIIADLLPRIGYNFIIPGFSSFKEWYMWAITRKDDGGDVYIGGYT
Sbjct: 361 RKVYEVVKNQTGSCPYIIADLLPRIGYNFIIPGFSSFKEWYMWAITRKDDGGDVYIGGYT 420

Query: 421 GWIGFYGVHKDDQGEYLPKEEFRKNFLEYYKVFVKEWRKFAEGRGKCFIPTVSPGFEKID 480
           GWIGFYGVHKDDQGEYLPKEEFRKNFLEYYKVFVKEWRKFAEGRGKCFIPTVSPGFEKID
Sbjct: 421 GWIGFYGVHKDDQGEYLPKEEFRKNFLEYYKVFVKEWRKFAEGRGKCFIPTVSPGFEKID 480

Query: 481 RPGFIDYKIPRDPVRFKKMLEYALENIGSCAEIRIDTWNDFYEGTYVEPSENEEFKFLNT 540
           RPGFIDYKIPRDPVRFKKMLEYALENIGSCAEIRIDTWNDFYEGTYVEPSENEEFKFLNT
Sbjct: 481 RPGFIDYKIPRDPVRFKKMLEYALENIGSCAEIRIDTWNDFYEGTYVEPSENEEFKFLNT 540

Query: 541 LRNLLVELSSP 551
           LRNLLVELSSP
Sbjct: 541 LRNLLVELSSP 551


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219979294
Number of Sequences: 2977
Number of extensions: 10182306
Number of successful extensions: 37269
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37236
Number of HSP's gapped (non-prelim): 1
length of query: 551
length of database: 189,106,746
effective HSP length: 54
effective length of query: 497
effective length of database: 156,788,448
effective search space: 77923858656
effective search space used: 77923858656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)