BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2288 (mobB-like) DE:MOLYBDOPTERIN-GUANINE DINUCLEOTIDE
BIOSYNTHESIS PROTEIN B RELATED
(244 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75195 molybdopterin-guanine dinucleotide biosynthesis prot... 481 e-135
pir||G71227 hypothetical protein PH0081 - Pyrococcus horikoshii ... 432 e-120
pir||A69074 molybdopterin-guanine dinucleotide biosynthesis prot... 108 7e-23
pir||C64465 molybdopterin-guanine dinucleotide biosynthesis prot... 106 2e-22
pir||S57480 molybdopterin-guanine dinucleotide biosynthesis prot... 97 2e-19
>pir||C75195 molybdopterin-guanine dinucleotide biosynthesis protein B related
PAB2288 - Pyrococcus abyssi (strain Orsay)
>gi|5457519|emb|CAB49010.1| (AJ248283)
MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN
B RELATED [Pyrococcus abyssi]
Length = 244
Score = 481 bits (1224), Expect = e-135
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MTKAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRVADLV 60
MTKAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRVADLV
Sbjct: 1 MTKAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRVADLV 60
Query: 61 LVRAQDTDALLFKAKDVNALFSMISADVVLIEGFKSIKHVPKVICARSEEDVRELNDGLA 120
LVRAQDTDALLFKAKDVNALFSMISADVVLIEGFKSIKHVPKVICARSEEDVRELNDGLA
Sbjct: 61 LVRAQDTDALLFKAKDVNALFSMISADVVLIEGFKSIKHVPKVICARSEEDVRELNDGLA 120
Query: 121 IAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGFMLPNIDCGLCGFNCEQMARLI 180
IAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGFMLPNIDCGLCGFNCEQMARLI
Sbjct: 121 IAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGFMLPNIDCGLCGFNCEQMARLI 180
Query: 181 VKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYREGKKIEI 240
VKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYREGKKIEI
Sbjct: 181 VKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYREGKKIEI 240
Query: 241 IIND 244
IIND
Sbjct: 241 IIND 244
>pir||G71227 hypothetical protein PH0081 - Pyrococcus horikoshii
>gi|3256467|dbj|BAA29150.1| (AP000001) 240aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 240
Score = 432 bits (1100), Expect = e-120
Identities = 211/239 (88%), Positives = 231/239 (96%)
Query: 5 VAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRVADLVLVRA 64
+AFVGFKKSGKTTTIEKVAR+LKE+GYRVAIVKSMHS FD+ GTDTWKFSR+AD VLV A
Sbjct: 1 MAFVGFKKSGKTTTIEKVARVLKEKGYRVAIVKSMHSEFDRPGTDTWKFSRIADSVLVHA 60
Query: 65 QDTDALLFKAKDVNALFSMISADVVLIEGFKSIKHVPKVICARSEEDVRELNDGLAIAVT 124
+DTDALLFKAKD+NALFSMIS+DVVLIEGFKSIKHVPKVICARSE++VRELNDGLAIAV+
Sbjct: 61 KDTDALLFKAKDINALFSMISSDVVLIEGFKSIKHVPKVICARSEDEVRELNDGLAIAVS 120
Query: 125 GVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGFMLPNIDCGLCGFNCEQMARLIVKGE 184
GVIAS G+KE+DGLPVIDGT+EPE+LA+LVLKRGFMLPNIDCGLCGFNCEQMA+LIVKGE
Sbjct: 121 GVIASQGVKEVDGLPVIDGTREPEKLAELVLKRGFMLPNIDCGLCGFNCEQMAKLIVKGE 180
Query: 185 KSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYREGKKIEIIIN 243
KSV DCVVLSSRPKVI++IDGQ L LKDWVQELVEKTIKGMLSAMKGYREGK+IEIIIN
Sbjct: 181 KSVNDCVVLSSRPKVIIKIDGQPLYLKDWVQELVEKTIKGMLSAMKGYREGKRIEIIIN 239
>pir||A69074 molybdopterin-guanine dinucleotide biosynthesis protein B related -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622672|gb|AAB86025.1| (AE000915)
molybdopterin-guanine dinucleotide biosynthesis protein
B related [Methanobacterium thermoautotrophicum]
Length = 224
Score = 108 bits (267), Expect = 7e-23
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 33/235 (14%)
Query: 3 KAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRV-ADLVL 61
K + G K +GKTT +EK+ L GYRVA +K H+ FD G DT K R A++V
Sbjct: 2 KIIGVTGTKDTGKTTLVEKIVEKLTGEGYRVATLKHTHTGFDFPGKDTDKHRRAGAEIVA 61
Query: 62 VRAQDTDALLFKAKDVNALFSMISA----DVVLIEGFKSIKHVPKVICARSEEDVRELND 117
++T LL + D+ + + D +++EGFK +++ E V+
Sbjct: 62 GSGRETFFLLEREMDLEEIAGTLEILDDLDFLIVEGFKEMEYASISTSTPGEFTVK---- 117
Query: 118 GLAIAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGF-MLPNIDCGLCGFN-CEQ 175
V+ ++++D L DL+ KR + +L N++C CGF+ C +
Sbjct: 118 --------VVDPFSLEDVD------------ELIDLIKKRSYGLLQNLNCKKCGFSSCRE 157
Query: 176 MARLIVKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMK 230
++GE DC S +V++RIDG+ +PL +VQE + KT++GM+ A++
Sbjct: 158 FREAKIRGEADDIDC--RSQPERVLLRIDGKPVPLNPFVQEFISKTVRGMIDALE 210
>pir||C64465 molybdopterin-guanine dinucleotide biosynthesis protein B homolog -
Methanococcus jannaschii >gi|1591964|gb|AAB99333.1|
(U67572) molybdopterin-guanine dinucleotide biosynthesis
protein B (mobB) [Methanococcus jannaschii]
Length = 234
Score = 106 bits (263), Expect = 2e-22
Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 31/250 (12%)
Query: 3 KAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNF--DKEGTDTWKFSRVADLV 60
+ + +G+K SGKTT IE+ ILK ++A++K + DK+GTDT++ S +
Sbjct: 2 RVIGVIGYKDSGKTTLIEE---ILKHSDKKIAVIKHTKEDVEVDKKGTDTYRLSNAGAKI 58
Query: 61 LVRAQDTDALLFKAK-DVNALFSMIS---ADVVLIEGFKSIK---HVPKVICARSEEDVR 113
V A D+ + F + D+ + S++S D V+IEGFK ++PK++ + ++
Sbjct: 59 TVLATDSKTVFFTDRMDLENILSVLSDYNIDFVIIEGFKEALKRLNIPKIVMLKDKDGSD 118
Query: 114 ELNDGLAIAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGFMLPNIDCGLCGFNC 173
++D A+ +I D L VI K N++CG CG+NC
Sbjct: 119 LIDDHTAM----IIEDYNYNIDDVLKVI------------YEKAVVPTMNLNCGHCGYNC 162
Query: 174 EQMARLIVKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYR 233
+ +VKGE DC VL+ K+IV DG+ +P +V ++V TIK M+ +KG
Sbjct: 163 RTFVKAVVKGEARWDDC-VLAKGIKIIV--DGKIIPAVPFVSKIVGSTIKAMIETLKGVD 219
Query: 234 EGKKIEIIIN 243
K I++ I+
Sbjct: 220 NPKTIKVEID 229
>pir||S57480 molybdopterin-guanine dinucleotide biosynthesis protein B related -
Methanobacterium thermoautotrophicum (strain Marburg)
>gi|2127694|pir||S63552 hypothetical protein -
Methanobacterium thermoautotrophicum
>gi|871466|emb|CAA61206.1| (X87968) putative
[Methanobacterium thermoautotrophicum]
Length = 227
Score = 96.7 bits (237), Expect = 2e-19
Identities = 69/248 (27%), Positives = 126/248 (49%), Gaps = 34/248 (13%)
Query: 3 KAVAFVGFKKSGKTTTIEKVARILKERGYRVAIVKSMHSNFDKEGTDTWKFSRV-ADLVL 61
+ V G K +GKT +EK+ R L + GYRVA +K H FD G DT + + A++V
Sbjct: 2 RIVWVTGTKDTGKTALVEKIVRKLVDAGYRVATLKHTHGGFDFPGKDTDRHRKAGAEIVA 61
Query: 62 VRAQDTDALLFKAKD----VNALFSMISADVVLIEGFKSIKHVPKVICARSEEDVRELND 117
++T L+ + D V L + D +++EGFKS+++
Sbjct: 62 GTGRETFFLIERGMDLPEVVGVLEMLDDIDFLVVEGFKSMEY------------------ 103
Query: 118 GLAIAVTGVIASSGIKEIDGLPVIDGTKEPERLADLVLKRGF-MLPNIDCGLCGF-NCEQ 175
A T +K +D + E + L +L+ +R + +L +++CG CGF +C +
Sbjct: 104 --ANISTSTPGEFTLKVVDPFKI----DEVDDLIELIERRSYGLLQDLNCGKCGFESCRE 157
Query: 176 MARLIVKGEKSVKDCVVLSSRPKVIVRIDGQSLPLKDWVQELVEKTIKGMLSAMKGYR-E 234
A+ V+G+ +C S +V++R++G+ +PL +VQ + +T+ GM+ A+ +
Sbjct: 158 FAKAKVQGDADDTNC--KSQPDRVLLRVNGKPVPLNPFVQNFIARTVLGMVDALDTESLK 215
Query: 235 GKKIEIII 242
+K+++II
Sbjct: 216 HQKVDLII 223
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.138 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81210493
Number of Sequences: 2977
Number of extensions: 3124721
Number of successful extensions: 9060
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9050
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 189,106,746
effective HSP length: 57
effective length of query: 187
effective length of database: 154,992,987
effective search space: 28983688569
effective search space used: 28983688569
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)