BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2289 (PAB2289) DE:Hypothetical protein
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75194 hypothetical protein PAB2289 - Pyrococcus abyssi (st... 359 1e-98
pir||A71227 probable cob(I)alamin adenosyltransferase - Pyrococc... 335 1e-91
pir||B72252 cob(I)alamin adenosyltransferase - Thermotoga mariti... 176 2e-43
emb|CAC12248.1| (AL445066) cob(I)alamin adenosyltransferase rela... 152 2e-36
pir||T44695 btuR protein [imported] - Bacillus megaterium >gi|37... 134 5e-31
pir||T03528 cob(I)alamin adenosyltransferase (EC 2.5.1.17) - Rho... 116 1e-25
pir||S75074 cob(I)alamin adenosyltransferase - Synechocystis sp.... 116 2e-25
sp|P29930|COBO_PSEDE COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID... 116 2e-25
sp|P13040|BTUR_ECOLI COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID... 116 2e-25
pir||A32232 transcriptional repressor protein - Escherichia coli 115 3e-25
gi|10957437 cob(I)alamin adenosyltransferase [Deinococcus radiod... 109 2e-23
gb|AAG19851.1| (AE005069) cobalamin adenosyltransferase; CobI [H... 107 8e-23
sp|P31570|BTUR_SALTY COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID... 106 1e-22
pir||H82249 cob(I)alamin adenosyltransferase VC1040 [imported] -... 106 2e-22
pdb|1G5R|A Chain A, The Three-Dimensional Structure Of Atp:corri... 105 4e-22
pir||F83485 cob(I)alamin adenosyltransferase PA1272 [imported] -... 100 1e-20
emb|CAB59467.1| (AL132644) cob(I)alamin adenosyltransferase (EC ... 92 3e-18
pir||D70589 probable cobA protein - Mycobacterium tuberculosis (... 92 5e-18
>pir||G75194 hypothetical protein PAB2289 - Pyrococcus abyssi (strain Orsay)
>gi|5457515|emb|CAB49006.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 359 bits (911), Expect = 1e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MSWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCG 60
MSWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCG
Sbjct: 1 MSWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCG 60
Query: 61 FKIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVE 120
FKIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVE
Sbjct: 61 FKIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVE 120
Query: 121 EVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
EVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY
Sbjct: 121 EVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
>pir||A71227 probable cob(I)alamin adenosyltransferase - Pyrococcus horikoshii
>gi|3256461|dbj|BAA29144.1| (AP000001) 175aa long
hypothetical cob(I)alamin adenosyltransferase
[Pyrococcus horikoshii]
Length = 175
Score = 335 bits (851), Expect = 1e-91
Identities = 156/175 (89%), Positives = 172/175 (98%)
Query: 1 MSWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCG 60
MSW+++LGM+HIYTGNGKGKTTAALGLA+R+LGSGGKVI++QFMKAPKVYGEYFMA+KC
Sbjct: 1 MSWREKLGMIHIYTGNGKGKTTAALGLALRMLGSGGKVIIIQFMKAPKVYGEYFMAEKCN 60
Query: 61 FKIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVE 120
FKIESYGLPKFVHGKPDEEDIKAAKRALERA+EVVKSGEWDLVILDEICVALGFGML++E
Sbjct: 61 FKIESYGLPKFVHGKPDEEDIKAAKRALERAREVVKSGEWDLVILDEICVALGFGMLNIE 120
Query: 121 EVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
EVKELI+ KAKNTELVLTGRYCP+ELYELADYVTEM+EIKHPYQRGI ARRG+EY
Sbjct: 121 EVKELIQEKAKNTELVLTGRYCPKELYELADYVTEMREIKHPYQRGILARRGVEY 175
>pir||B72252 cob(I)alamin adenosyltransferase - Thermotoga maritima (strain
MSB8) >gi|4982030|gb|AAD36533.1|AE001797_13 (AE001797)
cob(I)alamin adenosyltransferase [Thermotoga maritima]
Length = 170
Score = 176 bits (441), Expect = 2e-43
Identities = 88/168 (52%), Positives = 114/168 (67%)
Query: 8 GMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGFKIESYG 67
G +H+YTGNGKGKTTAALGLA R +G KV QF+K + F+I YG
Sbjct: 3 GYIHVYTGNGKGKTTAALGLATRAACAGLKVFFGQFLKGRETSELKISEFLPNFEIVQYG 62
Query: 68 LPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEVKELIR 127
P+F+ G P EE IK AK L AKE + S ++D+V+LDE+CVA+ G+ EE+++L+
Sbjct: 63 TPEFIVGNPSEEQIKKAKSGLADAKERLVSEKYDVVVLDELCVAIHLGLFSKEEIEDLLN 122
Query: 128 SKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
K +N ELV+TGRY PE L E AD VTEMKE+KH YQ+G+ AR+GIEY
Sbjct: 123 VKPENVELVITGRYAPEWLIEKADLVTEMKEVKHYYQKGVVARKGIEY 170
>emb|CAC12248.1| (AL445066) cob(I)alamin adenosyltransferase related protein
[Thermoplasma acidophilum]
Length = 197
Score = 152 bits (381), Expect = 2e-36
Identities = 84/199 (42%), Positives = 121/199 (60%), Gaps = 26/199 (13%)
Query: 1 MSWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEY---FMAD 57
M +LG++ ++TG+GKGKTTAA GLA R LG G +V ++QFMK VYGE M D
Sbjct: 1 MEENSKLGLIDVFTGDGKGKTTAAFGLAFRALGWGYRVYILQFMKTG-VYGENKSAIMFD 59
Query: 58 KCGFKIESYGLPKFV---------------------HGKPDEEDIKAAKRALERAKEVVK 96
+ K++ G+P F+ G P ++ +A K +R+ E +K
Sbjct: 60 R-NLKVDFVGMPYFIAWENEIPKEDLDKVKNVVICKKGHPPDDYRRAVKERFDRSLEELK 118
Query: 97 SGEWDLVILDEICVALGFGMLDVEEVKELIRSKAKNTELVLTGRYCPEELYELADYVTEM 156
SG+WD+ I DEI VAL + +L +EEV E+ ++K +TELV TGR P+E+ E AD +TE+
Sbjct: 119 SGKWDMFIYDEINVALYYYLLSMEEVMEIFKAKPDHTELVFTGRKMPKEIMERADLITEV 178
Query: 157 KEIKHPYQRGITARRGIEY 175
+HPYQRGI ARRG+++
Sbjct: 179 SSPRHPYQRGILARRGVDF 197
>pir||T44695 btuR protein [imported] - Bacillus megaterium
>gi|3724050|emb|CAA04319.1| (AJ000758) BtuR protein
[Bacillus megaterium]
Length = 203
Score = 134 bits (335), Expect = 5e-31
Identities = 79/179 (44%), Positives = 111/179 (61%), Gaps = 8/179 (4%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAP-KVYGEYFMADKCGFK 62
KD+ G+ IYTG+GKGKTTAALGLA+R G G KV+++QF+K+P + YGE M D+ G +
Sbjct: 26 KDKRGLTLIYTGDGKGKTTAALGLALRATGRGQKVLMIQFIKSPQRTYGEKLMFDRMGIE 85
Query: 63 IESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVE-- 120
+ G+ F K E A ++A KE V S E+D+VILDE+ AL ++
Sbjct: 86 MIQTGV-GFTWTKTPPEHRDALQKAWALTKEKVFSNEYDVVILDELNNALAIEKFPIDDV 144
Query: 121 ----EVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
EV +LI+ + ++ LV+TGR +E+ + AD VTEMK KH Y GI A +GIE+
Sbjct: 145 SPLHEVIDLIQKRPEHMHLVITGRSAKKEVMDAADLVTEMKPHKHYYDEGIPAVKGIEF 203
>pir||T03528 cob(I)alamin adenosyltransferase (EC 2.5.1.17) - Rhodobacter
capsulatus >gi|2407197|gb|AAB70520.1| (AF017138)
cob(I)alamin adenosyltransferase [Rhodobacter
capsulatus] >gi|3128329|gb|AAC16181.1| (AF010496)
cob(i)alamin adenosyltransferase [Rhodobacter
capsulatus]
Length = 212
Score = 116 bits (289), Expect = 1e-25
Identities = 69/174 (39%), Positives = 100/174 (56%), Gaps = 8/174 (4%)
Query: 8 GMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFM-----ADKCGFK 62
G++ ++TG+GKGK++A G+ +R + VVQF+K GE + D C F
Sbjct: 41 GLIIVHTGSGKGKSSAGFGMILRCIAHQMPCAVVQFIKGAWDTGERRLLTTHFGDLCQFH 100
Query: 63 IESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEV 122
G + E DI AA E+AKE+++ E LV+LDEI +AL +G LDVEEV
Sbjct: 101 AMGEGFTWETQDR--ERDIAAAVAGWEKAKELIRDPEIRLVLLDEINIALRYGYLDVEEV 158
Query: 123 KELIRS-KAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+R + + T +VLTGR E L E AD VTEM ++KHP++ GI + G+E+
Sbjct: 159 LAFLRDERPERTHVVLTGRNAAEALIEAADLVTEMGQVKHPFRAGIKGQPGVEF 212
>pir||S75074 cob(I)alamin adenosyltransferase - Synechocystis sp. (strain PCC
6803) >gi|1653019|dbj|BAA17936.1| (D90910) cob(I)alamin
adenosyltransferase [Synechocystis sp.]
Length = 203
Score = 116 bits (287), Expect = 2e-25
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 2 SWKDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGF 61
S K G+V ++TGNGKGKTTAALG+ +R LG G +V ++QF+K G + A+K F
Sbjct: 27 SAKAEKGLVIVHTGNGKGKTTAALGMVLRSLGHGYRVGIIQFIK-----GAWEPAEKAAF 81
Query: 62 KIESYGLPKFVHGK-------PDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGF 114
L G+ + D A A ++A E +++ ++ LV+LDE+ VAL
Sbjct: 82 TPWQDQLTFLALGEGFTWETQDRQRDQAIAHAAWQKALEYIRNPDYQLVLLDEVNVALKL 141
Query: 115 GMLDVEEVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPY-QRGITARRGI 173
G LDVE V ++ K ++ ++LTGR P+ L + AD VTEM IKHP+ ++ + A+ GI
Sbjct: 142 GYLDVETVLAGLQGKPESNHVILTGRGAPQPLIDRADLVTEMTLIKHPFREQNVKAQPGI 201
Query: 174 EY 175
E+
Sbjct: 202 EF 203
>sp|P29930|COBO_PSEDE COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID ADENOSYLTRANSFERASE)
>gi|94949|pir||E38164 cob(I)alamin adenosyltransferase
(EC 2.5.1.17) - Pseudomonas sp >gi|151155|gb|AAA25781.1|
(M62866) cob(I)alamin adenosyltransferase [Pseudomonas
denitrificans]
Length = 214
Score = 116 bits (287), Expect = 2e-25
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 DRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADK-CGFKI 63
D G++ + TG GKGK+TA G+ R + G VVQF+K GE + +K G
Sbjct: 40 DEKGLIIVNTGKGKGKSTAGFGMIFRHIAHGMPCAVVQFIKGAMATGERELIEKHFGDVC 99
Query: 64 ESYGLPK-FVHGKPDE-EDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEE 121
+ Y L + F D D+ A++A E+AKE+++ +V+LDEI +AL + +DV E
Sbjct: 100 QFYTLGEGFTWETQDRARDVAMAEKAWEKAKELIRDERNSMVLLDEINIALRYDYIDVAE 159
Query: 122 VKELIRS-KAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
V ++ K T +VLTGR E+L E+AD VTEM+ IKHP++ GI A++G+E+
Sbjct: 160 VVRFLKEEKPHMTHVVLTGRNAKEDLIEVADLVTEMELIKHPFRSGIKAQQGVEF 214
>sp|P13040|BTUR_ECOLI COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID ADENOSYLTRANSFERASE)
>gi|7465804|pir||A64875 cob(I)alamin adenosyltransferase
(EC 2.5.1.17) - Escherichia coli
>gi|145448|gb|AAA23530.1| (M21528) btuR protein
[Escherichia coli] >gi|1742065|dbj|BAA14807.1| (D90764)
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
(Corrinoid adenosyltransferase). [Escherichia coli]
>gi|1742081|dbj|BAA14822.1| (D90765) Cob(I)alamin
adenosyltransferase (EC 2.5.1.17) (Corrinoid
adenosyltransferase). [Escherichia coli]
>gi|1787525|gb|AAC74352.1| (AE000225) cob(I)alamin
adenolsyltransferase [Escherichia coli K12]
Length = 196
Score = 116 bits (287), Expect = 2e-25
Identities = 59/172 (34%), Positives = 97/172 (56%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGFKI 63
+D G++ ++TGNGKGKTTAA G A R +G G KV VVQF+K GE + + G +
Sbjct: 25 QDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEPHGVEF 84
Query: 64 ESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEVK 123
+ + E D A + + AK ++ D+V+LDE+ + + L +EEV
Sbjct: 85 QVMATGFTWDTQNRESDTAACREVWQHAKRMLADSSLDMVLLDELTYMVAYDYLPLEEVV 144
Query: 124 ELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ + + +++TGR C ++ ELAD V+E++ +KH + G+ A+ GI+Y
Sbjct: 145 QALNERPHQQTVIITGRGCHRDILELADTVSELRPVKHAFDAGVKAQIGIDY 196
>pir||A32232 transcriptional repressor protein - Escherichia coli
Length = 196
Score = 115 bits (285), Expect = 3e-25
Identities = 59/172 (34%), Positives = 97/172 (56%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGFKI 63
+D G++ ++TGNGKGKTTAA G A R +G G KV VVQF+K GE + + G +
Sbjct: 25 QDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEFHGVEF 84
Query: 64 ESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEVK 123
+ + E D A + + AK ++ D+V+LDE+ + + L +EEV
Sbjct: 85 QVMATGFTWDTQNRESDTAACREVWQHAKRMLADSSLDMVLLDELTYMVAYDYLPLEEVV 144
Query: 124 ELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ + + +++TGR C ++ ELAD V+E++ +KH + G+ A+ GI+Y
Sbjct: 145 QALNERPHQQTVIITGRGCHRDILELADTVSELRPVKHAFDAGVKAQIGIDY 196
>gi|10957437 cob(I)alamin adenosyltransferase [Deinococcus radiodurans]
>gi|7471252|pir||H75618 cob(I)alamin adenosyltransferase
- Deinococcus radiodurans (strain R1)
>gi|6460866|gb|AAF12570.1|AE001826_39 (AE001826)
cob(I)alamin adenosyltransferase [Deinococcus
radiodurans]
Length = 207
Score = 109 bits (271), Expect = 2e-23
Identities = 62/173 (35%), Positives = 98/173 (55%), Gaps = 1/173 (0%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKV-YGEYFMADKCGFK 62
K R G++ + TG GKGKTTAALGL +R G G +V + QF+K +GE+ D
Sbjct: 35 KGRRGLLIVNTGKGKGKTTAALGLMLRAHGRGLRVKMFQFLKHDTAKFGEHRTLDMLEIP 94
Query: 63 IESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEV 122
+ G + E + A A+E ++SGE+DL++LDE L +G + EV
Sbjct: 95 YQGLGDGWTWRSRDLENSAELAAHGWALAREAIESGEYDLIVLDEFTYPLKYGWVAWAEV 154
Query: 123 KELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ +++++ +++TGR EL LAD V+E++ +KH Y++GI + GIEY
Sbjct: 155 EPVLKNRDPLLHVIITGRDAIPELIALADTVSEIQPVKHAYEQGIGGQTGIEY 207
>gb|AAG19851.1| (AE005069) cobalamin adenosyltransferase; CobI [Halobacterium sp.
NRC-1]
Length = 225
Score = 107 bits (265), Expect = 8e-23
Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 25/193 (12%)
Query: 8 GMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMK-----APKVYGEYFMADKC-GF 61
G+V ++ G+GKGKTTAALG+AMR G G + VVQ MK V GEY D G
Sbjct: 33 GLVQVWWGDGKGKTTAALGMAMRAAGHGFRTHVVQLMKGGTGTVEDVRGEYAAIDAVPGI 92
Query: 62 KIES---YGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEW---------------DLV 103
E+ YG F G D+E A L RA+E+V + L+
Sbjct: 93 TYENAGHYGWHGFHDGSSDDEHAARANGGLARAQEIVDASTGVDGAVPLDADPTEGVHLL 152
Query: 104 ILDEICVALGFGMLDVEEVKELIRSKAKNTELVLTGRYC-PEELYELADYVTEMKEIKHP 162
+LDE+ A G++D E+V LI +K + E+VLTG + P + E AD VTE+++ +HP
Sbjct: 153 VLDEVLYAANRGLVDPEDVVALIDTKPDDLEVVLTGGHTEPTFVTERADLVTEVRKQRHP 212
Query: 163 YQRGITARRGIEY 175
+ G AR+G EY
Sbjct: 213 MENGQGARKGTEY 225
>sp|P31570|BTUR_SALTY COB(I)ALAMIN ADENOSYLTRANSFERASE (CORRINOID ADENOSYLTRANSFERASE)
(CORRINOID ADOTRANSFERASE ACTIVITY)
>gi|541211|pir||JN0721 ATP--corrinoid
adenosyltransferase (EC 2.5.-.-) - Salmonella
typhimurium >gi|11513600|pdb|1G5T|A Chain A, The
Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo-Atp
Form >gi|153886|gb|AAA71929.1| (L08890) corrinoid:ATP
adenosyltransferase [Salmonella typhimurium]
Length = 196
Score = 106 bits (263), Expect = 1e-22
Identities = 55/172 (31%), Positives = 95/172 (54%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGFKI 63
++ G++ ++TGNGKGKTTAA G A R +G G V VVQF+K GE + + G +
Sbjct: 25 QEERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEF 84
Query: 64 ESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEVK 123
+ + E D A + K ++ D+V+LDE+ + + L +EEV
Sbjct: 85 QVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVI 144
Query: 124 ELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ ++ + +++TGR C ++ +LAD V+E++ +KH + G+ A+ GI+Y
Sbjct: 145 SALNARPGHQTVIITGRGCHRDILDLADTVSELRPVKHAFDAGVKAQMGIDY 196
>pir||H82249 cob(I)alamin adenosyltransferase VC1040 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655504|gb|AAF94199.1| (AE004185) cob(I)alamin
adenosyltransferase [Vibrio cholerae]
Length = 201
Score = 106 bits (262), Expect = 2e-22
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCG--F 61
++ G++ I TGNGKGK+T+ G R +G G + VVQF+K GE + +K G F
Sbjct: 30 QEEKGLLLIITGNGKGKSTSGFGTIARAVGHGKQCAVVQFIKGTWENGERNLLEKLGVEF 89
Query: 62 KIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEE 121
++ S G + + D AA+ + K +++ D+V+ DE+ + +G ++++E
Sbjct: 90 QVMSTGFTWETQNR--DSDTAAAQEVWQHCKRMLQDESLDVVLFDELTYMVSYGYIELDE 147
Query: 122 VKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
V E + + K +++TGR L E+AD V+E+K IKH ++ G+ A +G+++
Sbjct: 148 VVEALNQRPKMQSVIITGRGAHRTLIEMADTVSEVKNIKHAFESGVKALKGVDW 201
>pdb|1G5R|A Chain A, The Three-Dimensional Structure Of Atp:corrinoid
Adenosyltransferase From Salmonella Typhimurium. Apo
Form
Length = 196
Score = 105 bits (259), Expect = 4e-22
Identities = 55/172 (31%), Positives = 93/172 (53%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGEYFMADKCGFKI 63
++ G++ ++TGNGKGKTTAA G A R +G G V VVQF+K GE + + G +
Sbjct: 25 QEERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEF 84
Query: 64 ESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDVEEVK 123
+ + E D A + K + D V+LDE+ + + L +EEV
Sbjct: 85 QVXATGFTWETQNREADTAACXAVWQHGKRXLADPLLDXVVLDELTYXVAYDYLPLEEVI 144
Query: 124 ELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ ++ + +++TGR C ++ +LAD V+E++ +KH + G+ A+ GI+Y
Sbjct: 145 SALNARPGHQTVIITGRGCHRDILDLADTVSELRPVKHAFDAGVKAQXGIDY 196
>pir||F83485 cob(I)alamin adenosyltransferase PA1272 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947206|gb|AAG04661.1|AE004557_2 (AE004557)
cob(I)alamin adenosyltransferase [Pseudomonas
aeruginosa]
Length = 203
Score = 100 bits (246), Expect = 1e-20
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 4 KDRLGMVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPKVYGE--YF--MADKC 59
+D G++ +++GNGKGK+++A G+ R LG G KV VVQF+K GE +F ++
Sbjct: 30 RDERGVLLVHSGNGKGKSSSAFGMVARALGHGMKVGVVQFIKGAASTGEEAFFRRFPEEV 89
Query: 60 GFKIESYGLPKFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDV 119
+ + G + + DI A+ A + A +++ + LV+LDE+ +AL G L++
Sbjct: 90 SYHVMGEGFTWETQDR--QRDIAKAEAAWKVAAQLLADPDVGLVVLDELNIALKHGYLEL 147
Query: 120 EEVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+ V I+++ +V+TGR + E AD VTEM +KH ++ GI A++G+E+
Sbjct: 148 DRVLADIQARPAMQHVVVTGRGAQPGMIEAADTVTEMSLVKHAFKAGIKAQKGVEF 203
>emb|CAB59467.1| (AL132644) cob(I)alamin adenosyltransferase (EC 2.5.1.17)
[Streptomyces coelicolor A3(2)]
Length = 199
Score = 92.4 bits (226), Expect = 3e-18
Identities = 57/176 (32%), Positives = 90/176 (50%), Gaps = 9/176 (5%)
Query: 9 MVHIYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPK-VYGEYFMADKCGFKIESYG 67
+V ++TG GKGK+TAA GLA+R G + V QF+K+ K GE G E
Sbjct: 24 LVVVHTGIGKGKSTAAFGLALRAWNQGWPIGVFQFVKSAKWKVGEENALRVLGASGEGGS 83
Query: 68 LP--------KFVHGKPDEEDIKAAKRALERAKEVVKSGEWDLVILDEICVALGFGMLDV 119
+ +V ++ + A+ E+ K + + + L +LDE + +G +D
Sbjct: 84 VDWHKMGEGWSWVQRDAQMDNEEKAREGWEQVKRDLAAETYKLYVLDEFAYPMHWGWVDT 143
Query: 120 EEVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIEY 175
+EV ++R + +V+TGR P L E AD VT+M ++KHP G +RGIE+
Sbjct: 144 DEVVSVLRERPGTQHVVITGRNAPGALVEFADLVTDMSKVKHPMDAGQKGQRGIEW 199
>pir||D70589 probable cobA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2078010|emb|CAB08457.1| (Z95207) cobA [Mycobacterium
tuberculosis]
Length = 207
Score = 91.7 bits (224), Expect = 5e-18
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 12 IYTGNGKGKTTAALGLAMRILGSGGKVIVVQFMKAPK-VYGEYFMADKCGFKIESYGLPK 70
++TG GKGK+TAA G+A+R +G + V QF+K+ K GE + G + +G+
Sbjct: 27 VHTGEGKGKSTAAFGMALRAWNAGLDIAVFQFVKSAKWKVGEEAAFRQLGRLHDQHGIGG 86
Query: 71 FVH-------------GKPDEEDIKAAKRALERAKEV---VKSGEWDLVILDEICVALGF 114
V + D+ A A + E+ + + D +LDE L +
Sbjct: 87 AVEWHKMGAGWSWTRTSRKAGTDVDRAAAAADGWAEIALRLATQRHDFYLLDEFTYPLKW 146
Query: 115 GMLDVEEVKELIRSKAKNTELVLTGRYCPEELYELADYVTEMKEIKHPYQRGITARRGIE 174
G LDV+EV +++R++ + +V+TGR P+ L AD VTEM ++KHP G ++GIE
Sbjct: 147 GWLDVDEVVDVLRARPGHQHVVITGRDAPQRLVAAADLVTEMTKVKHPMDAGRKGQKGIE 206
Query: 175 Y 175
+
Sbjct: 207 W 207
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67464388
Number of Sequences: 2977
Number of extensions: 2758213
Number of successful extensions: 8676
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8645
Number of HSP's gapped (non-prelim): 18
length of query: 175
length of database: 189,106,746
effective HSP length: 53
effective length of query: 122
effective length of database: 157,386,935
effective search space: 19201206070
effective search space used: 19201206070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)