BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2291 (PAB2291) DE:Hypothetical protein
(193 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75194 hypothetical protein PAB2291 - Pyrococcus abyssi (st... 374 e-103
pir||E71226 hypothetical protein PH0071 - Pyrococcus horikoshii ... 325 2e-88
pir||H69041 conserved hypothetical protein MTH1316 - Methanobact... 153 9e-37
pir||E64443 hypothetical protein MJ1150 - Methanococcus jannasch... 137 1e-31
gi|11499028 conserved hypothetical protein [Archaeoglobus fulgid... 123 2e-27
pir||B75613 conserved hypothetical protein - Deinococcus radiodu... 96 4e-19
emb|CAC11191.1| (AL445063) conserved hypothetical protein [Therm... 89 4e-17
>pir||C75194 hypothetical protein PAB2291 - Pyrococcus abyssi (strain Orsay)
>gi|5457511|emb|CAB49002.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 193
Score = 374 bits (950), Expect = e-103
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MIRKVKKEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAI 60
MIRKVKKEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAI
Sbjct: 1 MIRKVKKEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAI 60
Query: 61 IDAVTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKK 120
IDAVTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKK
Sbjct: 61 IDAVTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKK 120
Query: 121 HFNDYEMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHM 180
HFNDYEMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHM
Sbjct: 121 HFNDYEMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHM 180
Query: 181 IASAVMTGESTRE 193
IASAVMTGESTRE
Sbjct: 181 IASAVMTGESTRE 193
>pir||E71226 hypothetical protein PH0071 - Pyrococcus horikoshii
>gi|3256457|dbj|BAA29140.1| (AP000001) 193aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 193
Score = 325 bits (824), Expect = 2e-88
Identities = 158/193 (81%), Positives = 182/193 (93%)
Query: 1 MIRKVKKEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAI 60
MIRKVKKEIRVIGFDDGTFKFK+RGDKVILVGV+MKGS DV+G+VTRWITIDGLDVTDAI
Sbjct: 1 MIRKVKKEIRVIGFDDGTFKFKSRGDKVILVGVIMKGSSDVVGIVTRWITIDGLDVTDAI 60
Query: 61 IDAVTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKK 120
IDA+ SSRFKDLRV+LLKGITYAGFNIVDV RV+KETGLP+IVV+RKKPDI +ME AL+K
Sbjct: 61 IDAINSSRFKDLRVVLLKGITYAGFNIVDVSRVFKETGLPVIVVVRKKPDIGAMESALRK 120
Query: 121 HFNDYEMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHM 180
HF+DYE+RI+LL+SAG +ELIPGKLYYQAIGIS +KA EVI++TSRN+++PEALRLAHM
Sbjct: 121 HFDDYEVRIKLLRSAGKLVELIPGKLYYQAIGISYDKAAEVIQVTSRNSMVPEALRLAHM 180
Query: 181 IASAVMTGESTRE 193
IASAVM GES ++
Sbjct: 181 IASAVMCGESKKD 193
>pir||H69041 conserved hypothetical protein MTH1316 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622421|gb|AAB85794.1| (AE000895) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 204
Score = 153 bits (384), Expect = 9e-37
Identities = 84/191 (43%), Positives = 124/191 (63%), Gaps = 5/191 (2%)
Query: 3 RKVKKEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAIID 62
R++K EIR++G DD F ++ D V+LVG V +G + GV+T + +DG D T+ II+
Sbjct: 12 RQIKSEIRILGIDDAPFTPRSEED-VLLVGTVFRGGQWLDGVLTTTVRVDGDDATERIIE 70
Query: 63 AVTSSR-FKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKKH 121
V SR LRVI+L G+T+ GFN+VD+ + + TGLP+IVV+RK PD+ ++ ALK
Sbjct: 71 MVNGSRHLNQLRVIMLDGLTFGGFNVVDIVELSERTGLPVIVVVRKHPDMERIKRALKHR 130
Query: 122 FNDYEMRIRLLKSAGTPIELIPGK--LYYQAIGISREKAEEVIRITSRNALIPEALRLAH 179
F+D++ R R ++ AG I + + LY Q GI + A E++RI++ + IPE LR AH
Sbjct: 131 FSDWKARWRSIERAGR-IHRVESREPLYIQTAGIEPDDAAEIVRISTTRSSIPEPLRAAH 189
Query: 180 MIASAVMTGES 190
+IAS V GES
Sbjct: 190 IIASGVTLGES 200
>pir||E64443 hypothetical protein MJ1150 - Methanococcus jannaschii
>gi|1591781|gb|AAB99150.1| (U67557) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 184
Score = 137 bits (341), Expect = 1e-31
Identities = 76/178 (42%), Positives = 111/178 (61%), Gaps = 6/178 (3%)
Query: 5 VKKEIRVIGFDDGTFKFKARGDKV-ILVGVVMKGSLDVIGVVTRWITIDGLDVTDAIIDA 63
+K E+ VIGFDD F + DKV IL+G M+G+ + G+ R DG+DVT+ IID
Sbjct: 4 MKDEVEVIGFDDAPFN---KADKVCILIGTYMRGNRIIDGIYFRKFKKDGMDVTEKIIDI 60
Query: 64 VTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKKHFN 123
V +K ++VI L GIT+ GFNI D+ + KET P+IVVI K P+ + LALKK+F+
Sbjct: 61 VKEKHYKKIKVIFLAGITFGGFNIADLWEINKETEKPVIVVIDKYPNKEKIFLALKKYFD 120
Query: 124 DYEMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHMI 181
D + RI+L+ S P ++ +Y Q +G +E + VI+ T + IPE LR++H+I
Sbjct: 121 DADERIKLINSFPEPEKM--ENIYVQYVGADKEFVKNVIKKTKLKSKIPECLRISHLI 176
>gi|11499028 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450092|pir||H69428 conserved hypothetical protein
AF1433 - Archaeoglobus fulgidus
>gi|2649134|gb|AAB89811.1| (AE001004) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 181
Score = 123 bits (305), Expect = 2e-27
Identities = 70/185 (37%), Positives = 118/185 (62%), Gaps = 10/185 (5%)
Query: 7 KEIRVIGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAIIDAVTS 66
K+ R +G DD F R K +VG V G V G + I IDGLD TD +I V
Sbjct: 2 KKWRFLGIDDS---FDDR--KCCVVGCVTCGGY-VEGFLYTEIDIDGLDATDKLISMVRR 55
Query: 67 SRFKD-LRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKKHFNDY 125
S+F++ ++ I L GIT GFN+VD++RVY+ET +P++VV+R+KPD+ + A+ ++ +Y
Sbjct: 56 SKFREQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVMRRKPDMEEFDSAM-RNLENY 114
Query: 126 EMRIRLLKSAGTPIELIPGKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHMIASAV 185
E+R ++++ AG + G +Y Q G++ +AE++++ + +PE +R++H++ASA+
Sbjct: 115 ELRRKIVEVAGEIHRI--GDIYIQTAGLTPSEAEKLVKASLIKGNMPEPVRISHLVASAI 172
Query: 186 MTGES 190
+ GES
Sbjct: 173 IHGES 177
>pir||B75613 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460590|gb|AAF12296.1|AE001862_122 (AE001862)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 194
Score = 95.6 bits (234), Expect = 4e-19
Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 12 IGFDDGTFKFKARGDKVILVGVVMKGSLDVIGVVTRWITIDGLDVTDAIIDAVTSSRFKD 71
IGFDD F + RGD V + G V G + VV+ + DG + TD + VT+ +
Sbjct: 16 IGFDDAPFAREWRGD-VRIFGAVYAGPT-LHAVVSGRVRRDGRNATDELSRLVTAQA-EH 72
Query: 72 LRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKKHFNDYEMRIRL 131
L+++ L+GI AGFN+VD+ ++ TGLP++VV R+KP + + AL + + RL
Sbjct: 73 LQLVFLQGIALAGFNVVDLGALHARTGLPVLVVARRKPRLDRIRRALLEEVPGGARKWRL 132
Query: 132 LKSAGTPIELIP-GKLYYQAIGISREKAEEVIRITSRNALIPEALRLAHMIASAVMTGES 190
++ AG E+ P LY Q G+ +AE + IPE LR AH+IA V G S
Sbjct: 133 IEQAG---EMEPCAGLYVQRAGLLLAEAEAALGTFCLTGRIPEPLRTAHLIAGGVTRGSS 189
>emb|CAC11191.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 205
Score = 88.9 bits (217), Expect = 4e-17
Identities = 60/181 (33%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 4 KVKKEIRVIGFDDGTFKFKARGDKVI-LVGVVMKGSLDVIGVVTRWITIDGLDVTDAIID 62
++K+ IR++G DD F +RGD+ LVGV+M+ V + I +DG DV AI +
Sbjct: 25 QIKRGIRILGIDDSPF---SRGDRESNLVGVLMRMDGYVEMMEKEKIQVDGDDVNRAIEN 81
Query: 63 AVTSSRFKDLRVILLKGITYAGFNIVDVERVYKETGLPIIVVIRKKPDITSMELALKKHF 122
+ + R+I++ GI++AGFNI D++ +Y+ +P+I V + + M A++KH
Sbjct: 82 LFLYTG-RVARIIMMSGISFAGFNICDIDALYQRIRVPVISVFEQGGSVERMIAAIEKHL 140
Query: 123 NDYEMRIRLLKSAGTPIELIPGKLYYQA--IGISREKAEEVIRITSRNALIPEALRLAHM 180
+D E ++R+L+S P+E+ A GI + A+E+I + PEA+RLA +
Sbjct: 141 DDPE-KVRILRSL-KPVEIRNNGYIIMANLSGIDAQSAQEIITRNTIRGKFPEAIRLADL 198
Query: 181 I 181
+
Sbjct: 199 V 199
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63740317
Number of Sequences: 2977
Number of extensions: 2436705
Number of successful extensions: 5735
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5720
Number of HSP's gapped (non-prelim): 7
length of query: 193
length of database: 189,106,746
effective HSP length: 56
effective length of query: 137
effective length of database: 155,591,474
effective search space: 21316031938
effective search space used: 21316031938
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)