BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2293 (PAB2293) DE:Hypothetical protein
         (231 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75193 hypothetical protein PAB2293 - Pyrococcus abyssi (st...   468  e-131
pir||A71226 hypothetical protein PH0067 - Pyrococcus horikoshii ...   284  8e-76

>pir||G75193 hypothetical protein PAB2293 - Pyrococcus abyssi (strain Orsay)
           >gi|5457507|emb|CAB48998.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 231
           
 Score =  468 bits (1191), Expect = e-131
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MRIVAADTGGAVLDESLQPIGLISTVAVLVEKPYNTAKEFLVKFSDPYNYDLSGRQAILD 60
           MRIVAADTGGAVLDESLQPIGLISTVAVLVEKPYNTAKEFLVKFSDPYNYDLSGRQAILD
Sbjct: 1   MRIVAADTGGAVLDESLQPIGLISTVAVLVEKPYNTAKEFLVKFSDPYNYDLSGRQAILD 60

Query: 61  EINLAIELAKRTKPDVVHLDSTLGGIEVRKLDEPTIEALSISDKGKEVWKDLSKDVQPLA 120
           EINLAIELAKRTKPDVVHLDSTLGGIEVRKLDEPTIEALSISDKGKEVWKDLSKDVQPLA
Sbjct: 61  EINLAIELAKRTKPDVVHLDSTLGGIEVRKLDEPTIEALSISDKGKEVWKDLSKDVQPLA 120

Query: 121 KKFWEETGIEILAIGKSSVPVRIAEIYSGIFSVKWAIEEVKKGHKDHLIIGLPRYMGVEI 180
           KKFWEETGIEILAIGKSSVPVRIAEIYSGIFSVKWAIEEVKKGHKDHLIIGLPRYMGVEI
Sbjct: 121 KKFWEETGIEILAIGKSSVPVRIAEIYSGIFSVKWAIEEVKKGHKDHLIIGLPRYMGVEI 180

Query: 181 RDGKITGRTLDPREGNLYGEISIEVPNNIKWEVYPNPLVRRFHIFEIWGEY 231
           RDGKITGRTLDPREGNLYGEISIEVPNNIKWEVYPNPLVRRFHIFEIWGEY
Sbjct: 181 RDGKITGRTLDPREGNLYGEISIEVPNNIKWEVYPNPLVRRFHIFEIWGEY 231


>pir||A71226 hypothetical protein PH0067 - Pyrococcus horikoshii
           >gi|3256453|dbj|BAA29136.1| (AP000001) 184aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 184
           
 Score =  284 bits (718), Expect = 8e-76
 Identities = 139/181 (76%), Positives = 161/181 (88%), Gaps = 2/181 (1%)

Query: 1   MRIVAADTGGAVLDESLQPIGLISTVAVLVEKPYNTAKEFLVKFSDPYNYDLSGRQAILD 60
           MRIVAADTGGAVLDES QP+GLI+TVAVLVEKPY T+K FLVK++DPYNYDLSGRQAI D
Sbjct: 3   MRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNYDLSGRQAIRD 62

Query: 61  EINLAIELAKRTKPDVVHLDSTLGGIEVRKLDEPTIEALSISDKGKEVWKDLSKDVQPLA 120
           EI LAIELA+   PDV+HLDSTLGGIEVRKLDE TI+AL ISD+GKE+WK+LSKD+QPLA
Sbjct: 63  EIELAIELAREVSPDVIHLDSTLGGIEVRKLDESTIDALQISDRGKEIWKELSKDLQPLA 122

Query: 121 KKFWEETGIEILAIGKSSVPVRIAEIYSGIFSVKWAIEEVKKGHKDHLIIGLPRYMGVEI 180
           KKFWEETGIEI+AIGKSSVPVRIAEIY+GIFSVKWA++ VK+  K  L++G P    +++
Sbjct: 123 KKFWEETGIEIIAIGKSSVPVRIAEIYAGIFSVKWALDNVKE--KGGLLVGYPGIWRLKL 180

Query: 181 R 181
           R
Sbjct: 181 R 181


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.140    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91134921
Number of Sequences: 2977
Number of extensions: 3796699
Number of successful extensions: 9493
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9491
Number of HSP's gapped (non-prelim): 2
length of query: 231
length of database: 189,106,746
effective HSP length: 54
effective length of query: 177
effective length of database: 156,788,448
effective search space: 27751555296
effective search space used: 27751555296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)