BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2298 (PAB2298) DE:Hypothetical protein
         (134 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75193 hypothetical protein PAB2298 - Pyrococcus abyssi (st...   274  3e-73
pir||D71225 hypothetical protein PH0062 - Pyrococcus horikoshii ...   232  2e-60

>pir||C75193 hypothetical protein PAB2298 - Pyrococcus abyssi (strain Orsay)
           >gi|5457503|emb|CAB48994.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 134
           
 Score =  274 bits (693), Expect = 3e-73
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MKLRELIESLSEKQKRTVKNCLDRCGIYDLEQEVDPYPREDVKRFLKVISNPIRYGILKM 60
           MKLRELIESLSEKQKRTVKNCLDRCGIYDLEQEVDPYPREDVKRFLKVISNPIRYGILKM
Sbjct: 1   MKLRELIESLSEKQKRTVKNCLDRCGIYDLEQEVDPYPREDVKRFLKVISNPIRYGILKM 60

Query: 61  LRDKWMCVCLISKALDVDQTLVSHHIRILKEAELLEERREGKLRFYRTNKEKFMEYLRAV 120
           LRDKWMCVCLISKALDVDQTLVSHHIRILKEAELLEERREGKLRFYRTNKEKFMEYLRAV
Sbjct: 61  LRDKWMCVCLISKALDVDQTLVSHHIRILKEAELLEERREGKLRFYRTNKEKFMEYLRAV 120

Query: 121 MEEIGYEGATGGSE 134
           MEEIGYEGATGGSE
Sbjct: 121 MEEIGYEGATGGSE 134


>pir||D71225 hypothetical protein PH0062 - Pyrococcus horikoshii
           >gi|3256448|dbj|BAA29131.1| (AP000001) 137aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 137
           
 Score =  232 bits (585), Expect = 2e-60
 Identities = 107/128 (83%), Positives = 122/128 (94%)

Query: 1   MKLRELIESLSEKQKRTVKNCLDRCGIYDLEQEVDPYPREDVKRFLKVISNPIRYGILKM 60
           MKLREL+ESLSEKQ+RTV NCL+RCGIYDLE+EV+PYP+E+VKRFLKV+SNPIRYGI+KM
Sbjct: 5   MKLRELVESLSEKQRRTVMNCLERCGIYDLEEEVNPYPKEEVKRFLKVVSNPIRYGIVKM 64

Query: 61  LRDKWMCVCLISKALDVDQTLVSHHIRILKEAELLEERREGKLRFYRTNKEKFMEYLRAV 120
           L DKWMCVCLI+KALDVDQTLVSHHIRILKE +LLEE+REGKLRFYR NKEK MEY+R +
Sbjct: 65  LIDKWMCVCLIAKALDVDQTLVSHHIRILKEIDLLEEKREGKLRFYRVNKEKLMEYMREM 124

Query: 121 MEEIGYEG 128
           MEE+GYEG
Sbjct: 125 MEELGYEG 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48098714
Number of Sequences: 2977
Number of extensions: 1754395
Number of successful extensions: 6069
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6067
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 189,106,746
effective HSP length: 53
effective length of query: 81
effective length of database: 157,386,935
effective search space: 12748341735
effective search space used: 12748341735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)