BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2299 (PAB2299) DE:HYPOTHETICAL TRANSCRIPTIONAL REGULATOR
(148 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75193 probable transcription regulator PAB2299 - Pyrococcu... 282 2e-75
pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii ... 241 2e-63
pir||B71235 probable transcription regulator - Pyrococcus horiko... 72 3e-12
pir||E71028 probable transcription regulator - Pyrococcus horiko... 72 3e-12
pir||A75106 transcription regulatory protein, asnc family PAB193... 70 1e-11
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 69 2e-11
>pir||A75193 probable transcription regulator PAB2299 - Pyrococcus abyssi
(strain Orsay) >gi|5457501|emb|CAB48992.1| (AJ248283)
hypothetical TRANSCRIPTIONAL REGULATOR [Pyrococcus
abyssi]
Length = 148
Score = 282 bits (713), Expect = 2e-75
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MRKLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLD 60
MRKLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLD
Sbjct: 1 MRKLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLD 60
Query: 61 KLGYMYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGI 120
KLGYMYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGI
Sbjct: 61 KLGYMYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGI 120
Query: 121 INEFLQKIKNAESVEVVLISEIKKFEII 148
INEFLQKIKNAESVEVVLISEIKKFEII
Sbjct: 121 INEFLQKIKNAESVEVVLISEIKKFEII 148
>pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii
>gi|3256446|dbj|BAA29129.1| (AP000001) 151aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 151
Score = 241 bits (609), Expect = 2e-63
Identities = 115/148 (77%), Positives = 141/148 (94%)
Query: 1 MRKLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLD 60
MRKLD+VD+QLVKILS+NSRLTYRELA+++NTTRQRIARRI KLKKLG+I+KFTIIPD+D
Sbjct: 4 MRKLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63
Query: 61 KLGYMYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGI 120
KLGYMYA VL+K +VPS+ D +ISEIS++EYVK +EKGVGRYN+IVRLLLPKD+K+AE +
Sbjct: 64 KLGYMYAIVLIKSKVPSDADKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAENL 123
Query: 121 INEFLQKIKNAESVEVVLISEIKKFEII 148
I+EFLQ+IKNAE+VEV+LISE++KFEII
Sbjct: 124 ISEFLQRIKNAENVEVILISEVRKFEII 151
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 72.2 bits (174), Expect = 3e-12
Identities = 40/144 (27%), Positives = 84/144 (57%), Gaps = 3/144 (2%)
Query: 3 KLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKL 62
+LD++D ++++L ++ R++Y E++ +N + R+ +L K GVI+KF + + K
Sbjct: 11 ELDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKA 70
Query: 63 GY-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGII 121
GY + AF+ V P++V ++ E++ V + G +++ +++ + KDL+E E I
Sbjct: 71 GYEIVAFIAVDAE-PAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTV-KDLQELERFI 128
Query: 122 NEFLQKIKNAESVEVVLISEIKKF 145
E + KI +S E +++ +KK+
Sbjct: 129 LEKMAKIDGIKSTETSILTSVKKW 152
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 71.8 bits (173), Expect = 3e-12
Identities = 44/133 (33%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 4 LDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKLG 63
LD++D +++KIL + + RE++++ I RI KL++ GVIKKFT I D + LG
Sbjct: 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query: 64 Y-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGIIN 122
Y M AF+LVK++ + + S ++ + E+ + G Y+++V+ + K+ +E +N
Sbjct: 65 YSMLAFILVKVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVK-IRTKNSEE----LN 118
Query: 123 EFLQKIKNAESVE 135
FL I + VE
Sbjct: 119 NFLDLIGSIPGVE 131
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 70.2 bits (169), Expect = 1e-11
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 4 LDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKLG 63
LD++D +++KIL ++ + RE++++ I RI KL++ GVI+KFT I + + LG
Sbjct: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
Query: 64 Y-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGIIN 122
Y M AF+L+K++ + + S + E + E+ + G Y+++V+ + K+ +E +N
Sbjct: 65 YSMLAFILIKVKAGKYAE-VASNLVKYEEIMEVYETTGDYDMVVK-IRTKNSEE----LN 118
Query: 123 EFLQKIKNAESVE 135
FL I + VE
Sbjct: 119 SFLDVIGSIPGVE 131
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 69.1 bits (166), Expect = 2e-11
Identities = 37/144 (25%), Positives = 84/144 (57%), Gaps = 3/144 (2%)
Query: 3 KLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKL 62
+LD++D ++++L ++ R++Y E++ +N + R+ +L + GVI+KF + + K
Sbjct: 11 QLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKA 70
Query: 63 GY-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGII 121
GY + AF+ + P++V ++ E++ + V + G +++ +++ + +DL+E E I
Sbjct: 71 GYEIVAFIAIDAE-PAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTV-RDLQELERFI 128
Query: 122 NEFLQKIKNAESVEVVLISEIKKF 145
E + KI S E +++ +KK+
Sbjct: 129 LEKMAKIDGIRSTETSILTSVKKW 152
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.362
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42766215
Number of Sequences: 2977
Number of extensions: 1500637
Number of successful extensions: 5056
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5052
Number of HSP's gapped (non-prelim): 6
length of query: 148
length of database: 189,106,746
effective HSP length: 59
effective length of query: 89
effective length of database: 153,796,013
effective search space: 13687845157
effective search space used: 13687845157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)