BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2301 (hit) DE:HIT FAMILY PROTEIN (HIT).
(185 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75192 hit family protein (hit). PAB2301 - Pyrococcus abyss... 386 e-106
pir||F71224 hypothetical protein PH0057 - Pyrococcus horikoshii ... 342 1e-93
gi|11499793 HIT family protein (hit) [Archaeoglobus fulgidus] >g... 238 3e-62
pir||G72766 probable hit-like protein APE0122 - Aeropyrum pernix... 204 7e-52
gb|AAK40588.1| HIT-like protein, hypothetical (hit) [Sulfolobus... 203 2e-51
pir||D70485 hypothetical protein aq_2159 - Aquifex aeolicus >gi|... 195 4e-49
gb|AAG20065.1| (AE005086) histidine triad protein; Hit2 [Halobac... 155 3e-37
emb|CAB70932.1| (AL137778) hypothetical HIT family protein SCL2.... 151 6e-36
gb|AAG17335.1|AF265558_2 (AF265558) unknown [Mycobacterium smegm... 144 8e-34
pir||F81395 HIT-like protein Cj0499 [imported] - Campylobacter j... 139 3e-32
pir||E64612 conserved hypothetical protein HP0741 - Helicobacter... 138 4e-32
emb|CAB09619.1| (Z96801) hypothetical protein MLCL581.17c [Mycob... 138 6e-32
pir||D71903 hit family protein - Helicobacter pylori (strain J99... 138 6e-32
pir||D70571 hypothetical protein Rv2613c - Mycobacterium tubercu... 136 2e-31
pir||D75073 hit-like protein PAB0657 - Pyrococcus abyssi (strain... 113 1e-24
pir||D71092 hypothetical protein PH1001 - Pyrococcus horikoshii ... 106 1e-22
gb|AAK42339.1| Histidine triad (Hit) family protein, putative [S... 75 5e-13
sp|P95937|YHIT_SULSO HYPOTHETICAL HIT-LIKE PROTEIN C01039 >gi|74... 75 5e-13
emb|CAC12267.1| (AL445066) histidine triad (HIT) related protein... 72 5e-12
sp|Q58276|Y866_METJA HYPOTHETICAL HIT-LIKE PROTEIN MJ0866 >gi|28... 71 1e-11
pir||B64408 histidine triad (HIT) protein MJ0866 - Methanococcus... 70 2e-11
>pir||E75192 hit family protein (hit). PAB2301 - Pyrococcus abyssi (strain
Orsay) >gi|5457497|emb|CAB48988.1| (AJ248283) HIT FAMILY
PROTEIN (HIT). [Pyrococcus abyssi]
Length = 185
Score = 386 bits (980), Expect = e-106
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MTKAFKNTKLLLRLGGAMKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERLILYRGKH 60
MTKAFKNTKLLLRLGGAMKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERLILYRGKH
Sbjct: 1 MTKAFKNTKLLLRLGGAMKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERLILYRGKH 60
Query: 61 AFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLG 120
AFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLG
Sbjct: 61 AFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLG 120
Query: 121 FNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIEDA 180
FNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIEDA
Sbjct: 121 FNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIEDA 180
Query: 181 ERERA 185
ERERA
Sbjct: 181 ERERA 185
>pir||F71224 hypothetical protein PH0057 - Pyrococcus horikoshii
>gi|3256442|dbj|BAA29125.1| (AP000001) 168aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 168
Score = 342 bits (869), Expect = 1e-93
Identities = 160/166 (96%), Positives = 166/166 (99%)
Query: 18 MKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMV 77
MK+LWAPWRIEYIR+PKHEGCIFCDFPKENRD+ERLILYRGKHAFIIMNNYPYNPGHVMV
Sbjct: 1 MKVLWAPWRIEYIRSPKHEGCIFCDFPKENRDKERLILYRGKHAFIIMNNYPYNPGHVMV 60
Query: 78 APYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHL 137
APYRHVASIEDLT+EEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHL
Sbjct: 61 APYRHVASIEDLTDEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHL 120
Query: 138 HIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIEDAERE 183
HIVPRWNGDTNFMPVIADTKVIPESLEQAY+ELKKALEEIE+AERE
Sbjct: 121 HIVPRWNGDTNFMPVIADTKVIPESLEQAYEELKKALEEIENAERE 166
>gi|11499793 HIT family protein (hit) [Archaeoglobus fulgidus]
>gi|7434503|pir||C69526 histidine triad protein AF2211 -
Archaeoglobus fulgidus >gi|2648315|gb|AAB89043.1|
(AE000953) HIT family protein (hit) [Archaeoglobus
fulgidus]
Length = 160
Score = 238 bits (602), Expect = 3e-62
Identities = 105/159 (66%), Positives = 131/159 (82%)
Query: 18 MKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMV 77
M+ ++APWRI Y+ APK + C+FC PKENRDRE LILYRGK ++IMN PYNPGHVMV
Sbjct: 1 MERIFAPWRIRYVLAPKPKECVFCTAPKENRDRENLILYRGKTCYVIMNRNPYNPGHVMV 60
Query: 78 APYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHL 137
PYRH+ SIED+TEEE++E MKL L +KAIR+VM PDGFN+G NIGKVAGAG+ H+H+
Sbjct: 61 NPYRHIPSIEDMTEEEIVEAMKLVRLSLKAIREVMNPDGFNVGVNIGKVAGAGIAAHLHI 120
Query: 138 HIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEE 176
H+VPRWNGDT+FMPV+AD +VIPE+LE+ YD+L A +
Sbjct: 121 HVVPRWNGDTSFMPVLADVQVIPEALEETYDKLYPAFHK 159
>pir||G72766 probable hit-like protein APE0122 - Aeropyrum pernix (strain K1)
>gi|5103512|dbj|BAA79033.1| (AP000058) 184aa long
hypothetical hit-like protein [Aeropyrum pernix]
Length = 184
Score = 204 bits (513), Expect = 7e-52
Identities = 89/158 (56%), Positives = 119/158 (74%), Gaps = 1/158 (0%)
Query: 20 ILWAPWRIEYIR-APKHEGCIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVA 78
ILWAPWR++YI+ A EGC+FC+ P D + LI+YRG +++I+N YPYN GH+MV
Sbjct: 20 ILWAPWRMKYIKQAGSREGCVFCEAPSMGDDAKALIVYRGSLSYVILNKYPYNSGHIMVT 79
Query: 79 PYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLH 138
PYRHVA +EDLT +E++E+ KL +KA+++V P GFN+G NIG+ AGAG+ GH H+H
Sbjct: 80 PYRHVAELEDLTMDEIVEMAKLVRASVKALKRVYAPHGFNIGVNIGEAAGAGIAGHFHIH 139
Query: 139 IVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEE 176
IVPRW GD+NFM + TKVIPESLE + +LK A+EE
Sbjct: 140 IVPRWRGDSNFMLTVGGTKVIPESLEDTFKKLKPAVEE 177
>gb|AAK40588.1| HIT-like protein, hypothetical (hit) [Sulfolobus solfataricus]
Length = 171
Score = 203 bits (510), Expect = 2e-51
Identities = 90/163 (55%), Positives = 119/163 (72%), Gaps = 3/163 (1%)
Query: 18 MKILWAPWRIEYIRAP---KHEGCIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGH 74
M ILWAPWR +YI K + C+FC KE D + I+YRGKHAFII+N +PYN H
Sbjct: 1 MDILWAPWRAKYISETSKVKQDECLFCRVIKEENDEQNYIVYRGKHAFIILNAFPYNTAH 60
Query: 75 VMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGH 134
VMV PYRHV S+E L+ +E L+I L+ + ++AIR + PDGFN+G NIG+VAGAG++ H
Sbjct: 61 VMVVPYRHVPSVELLSNDEALDIFTLSTIAIRAIRDIYAPDGFNIGVNIGRVAGAGIESH 120
Query: 135 VHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEI 177
+H+HIVPRWNGD+NFMPVI +TKV+PE+L + +L + EI
Sbjct: 121 IHVHIVPRWNGDSNFMPVIFNTKVMPETLSDTFKKLNTKVNEI 163
>pir||D70485 hypothetical protein aq_2159 - Aquifex aeolicus
>gi|2984367|gb|AAC07886.1| (AE000776) putative protein
[Aquifex aeolicus]
Length = 191
Score = 195 bits (490), Expect = 4e-49
Identities = 87/163 (53%), Positives = 119/163 (72%), Gaps = 3/163 (1%)
Query: 18 MKILWAPWRIEYIR-APKHEGCIFCDFPKENRDR--ERLILYRGKHAFIIMNNYPYNPGH 74
MKILWAPWR Y+ K EGC C + ++ E L++Y+GK+AFII+N YPYN GH
Sbjct: 24 MKILWAPWRRAYVENVDKIEGCFLCHALSQPPEKWKEVLLVYKGKNAFIILNKYPYNTGH 83
Query: 75 VMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGH 134
+M+ P +H+ + E++ EE LE+ KL + +KA++K KP GFN+G+N G+ AGAG++ H
Sbjct: 84 LMIVPVKHIGNYEEVDEETALEMHKLLQVSLKALKKEYKPHGFNVGYNFGRPAGAGLEEH 143
Query: 135 VHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEI 177
+HLH+VPRWNGDTNFMPV+A TKVI E L YD +KKA+EE+
Sbjct: 144 IHLHVVPRWNGDTNFMPVLAQTKVISEDLYSTYDRVKKAIEEV 186
>gb|AAG20065.1| (AE005086) histidine triad protein; Hit2 [Halobacterium sp. NRC-1]
Length = 181
Score = 155 bits (388), Expect = 3e-37
Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 18 MKILWAPWRIEYIR----APKHEGCIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPG 73
M+ ++APWRIE++ C+FC FP R+ L++ R HA +++NNYPYNPG
Sbjct: 1 MEQVFAPWRIEWVERDDTTDDDVDCVFCAFPGREHARQHLVVARTDHAAVMLNNYPYNPG 60
Query: 74 HVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNI-GKVAGAGVD 132
H MV P H DL + +L+ +L + A+ + PD FN G N+ G AG +
Sbjct: 61 HCMVIPDVHTGDYGDLDADTLLDHARLKQATLDALDAALGPDAFNTGLNLGGGAAGGSIG 120
Query: 133 GHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIEDA 180
H+H H+VPRWNGDTNFMPVI+DTKVI E+L+ YD L A DA
Sbjct: 121 DHLHTHVVPRWNGDTNFMPVISDTKVIVEALDDTYDRLHDAFLARPDA 168
>emb|CAB70932.1| (AL137778) hypothetical HIT family protein SCL2.20c [Streptomyces
coelicolor A3(2)]
Length = 186
Score = 151 bits (377), Expect = 6e-36
Identities = 73/164 (44%), Positives = 97/164 (58%), Gaps = 8/164 (4%)
Query: 17 AMKILWAPWRIEYIRAPKH-------EGCIFCDFPKENRDRERLILYRGKHAFIIMNNYP 69
A + LW P R+ YI+ +GC FC P ++ D + LI+ RG+H + ++N YP
Sbjct: 16 AFQRLWTPHRMAYIQGENKPSGPGADDGCPFCSIPAKS-DEDGLIVRRGEHVYAVLNLYP 74
Query: 70 YNPGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGA 129
YN GH+M+ PYRHVA +L E E+ +L M A+R GFNLG N G VAGA
Sbjct: 75 YNGGHLMIVPYRHVADYTELNAVETAELAELTKQAMTALRAASGAQGFNLGMNQGAVAGA 134
Query: 130 GVDGHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKA 173
G+ H+H H+VPRW GDTNFMP I TKV+P+ L L +A
Sbjct: 135 GIAAHLHQHVVPRWGGDTNFMPAIGHTKVLPQLLGDTRKMLAEA 178
>gb|AAG17335.1|AF265558_2 (AF265558) unknown [Mycobacterium smegmatis]
Length = 205
Score = 144 bits (359), Expect = 8e-34
Identities = 71/160 (44%), Positives = 101/160 (62%), Gaps = 11/160 (6%)
Query: 16 GAMKILWAPWRIEYI-RAP---KHEGCI------FCDFPKENRDRERLILYRGKHAFIIM 65
G ++ LW P R+ YI AP + EG F D P E D E L++ RGK + ++
Sbjct: 18 GHLQRLWTPHRMSYIAEAPMKKRGEGGSAGSAEPFTDIP-EMPDEEGLMVARGKRVYAVL 76
Query: 66 NNYPYNPGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGK 125
N YPYNPGH+MV PYR V+ +EDLTE+E E+M ++ I+ V +P GFN+G N+G
Sbjct: 77 NLYPYNPGHLMVVPYRRVSELEDLTEDESSELMAFTQKAIRVIKAVSRPHGFNVGLNLGS 136
Query: 126 VAGAGVDGHVHLHIVPRWNGDTNFMPVIADTKVIPESLEQ 165
AG + H+H+H+VPRW GD NF+ +I +KVIP+ L++
Sbjct: 137 SAGGSLAEHLHMHVVPRWGGDANFITIIGGSKVIPQLLKE 176
>pir||F81395 HIT-like protein Cj0499 [imported] - Campylobacter jejuni (strain
NCTC 11168) >gi|6967970|emb|CAB75137.1| (AL139075)
HIT-like protein [Campylobacter jejuni]
Length = 161
Score = 139 bits (346), Expect = 3e-32
Identities = 67/162 (41%), Positives = 99/162 (60%), Gaps = 2/162 (1%)
Query: 18 MKILWAPWRIEYIRAPKHEGCIFCDFPKENRDRERL-ILYRGKHAFIIMNNYPYNPGHVM 76
M+ L+APWR EY K C FCD + + E L +++R KH F +MN YPY+ GH M
Sbjct: 1 MQYLYAPWRSEYFEKVKSI-CPFCDCANKIKSDEELGVIFRAKHCFGVMNRYPYSAGHFM 59
Query: 77 VAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVH 136
V PY H IE+L++E E+ L +K +++ + +G N+G N+ K AGAG+ H H
Sbjct: 60 VIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNIGMNLSKDAGAGIAFHCH 119
Query: 137 LHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEEIE 178
H+VPRW+GDTNF+ I +T+V ++EQ Y +L A + +
Sbjct: 120 YHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNAQ 161
>pir||E64612 conserved hypothetical protein HP0741 - Helicobacter pylori
(strain 26695) >gi|2313863|gb|AAD07787.1| (AE000586)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 161
Score = 138 bits (345), Expect = 4e-32
Identities = 68/160 (42%), Positives = 101/160 (62%), Gaps = 3/160 (1%)
Query: 18 MKILWAPWRIEYIRAPKHEGCIFCDFPKEN-RDRERLILYRGKHAFIIMNNYPYNPGHVM 76
M+ L+APWR Y++ K++ C+FC+ + +D E +LYR F++MN YPYNPGH++
Sbjct: 1 MQHLYAPWRESYLKG-KNKSCVFCEISQNPAKDSENRVLYRNSDLFVVMNAYPYNPGHLL 59
Query: 77 VAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVH 136
+ P+ H AS+E L L + LA ++KA+ G NLG N+ + AGAG+ H+H
Sbjct: 60 IIPHVHQASVELLDLNTWLNMNALAPKVLKALY-AYGAQGINLGLNLHRNAGAGIPEHLH 118
Query: 137 LHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEE 176
+H+VPR+ GD+NFM VIA T+V L + Y LK LE+
Sbjct: 119 MHLVPRFLGDSNFMSVIAQTRVCGMDLNETYLTLKNLLEK 158
>emb|CAB09619.1| (Z96801) hypothetical protein MLCL581.17c [Mycobacterium leprae]
Length = 186
Score = 138 bits (343), Expect = 6e-32
Identities = 64/149 (42%), Positives = 96/149 (63%), Gaps = 7/149 (4%)
Query: 21 LWAPWRIEYI-RAP-KHEGCI----FCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGH 74
LW P+R+ Y+ AP H+ F D P+ + D + L++ RG+ + ++N YPYNPGH
Sbjct: 12 LWTPYRMTYLAEAPVNHDNSTPAQPFTDIPQLS-DEDGLVVARGELVYAVLNLYPYNPGH 70
Query: 75 VMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGH 134
+MV PYR V+ +EDLT+ E E+M ++ I+ V +P GFN+G N+G AG + H
Sbjct: 71 LMVVPYRQVSELEDLTDAESAELMTFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEH 130
Query: 135 VHLHIVPRWNGDTNFMPVIADTKVIPESL 163
+H+H+VPRW GD NF+ +I +KVIP+ L
Sbjct: 131 LHVHVVPRWGGDANFITIIGGSKVIPQLL 159
>pir||D71903 hit family protein - Helicobacter pylori (strain J99)
>gi|4155223|gb|AAD06245.1| (AE001499) HIT FAMILY PROTEIN
[Helicobacter pylori J99]
Length = 161
Score = 138 bits (343), Expect = 6e-32
Identities = 68/160 (42%), Positives = 100/160 (62%), Gaps = 3/160 (1%)
Query: 18 MKILWAPWRIEYIRAPKHEGCIFCDFPKE-NRDRERLILYRGKHAFIIMNNYPYNPGHVM 76
M+ L+APWR Y++ K++ C+FC + +D E +LYR F++MN YPYNPGH++
Sbjct: 1 MQHLYAPWRESYLKE-KNKSCVFCGISQNPTKDSENRVLYRNSDLFVVMNAYPYNPGHLL 59
Query: 77 VAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVH 136
+ P+ H AS+E L L + LA I+KA+ G NLG N+ + AGAG+ H+H
Sbjct: 60 IVPHAHQASVELLDLNTWLNMNALAPKILKALY-AYGAQGINLGLNLHRNAGAGIPEHLH 118
Query: 137 LHIVPRWNGDTNFMPVIADTKVIPESLEQAYDELKKALEE 176
+H+VPR+ GD+NF+ VIA T+V L + Y LK LE+
Sbjct: 119 MHLVPRFLGDSNFISVIAQTRVCGMDLNETYLALKNLLEK 158
>pir||D70571 hypothetical protein Rv2613c - Mycobacterium tuberculosis (strain
H37RV) >gi|2104300|emb|CAB08629.1| (Z95387) hypothetical
protein Rv2613c [Mycobacterium tuberculosis]
Length = 195
Score = 136 bits (339), Expect = 2e-31
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 10/152 (6%)
Query: 21 LWAPWRIEYI------RAPKHEGCI---FCDFPKENRDRERLILYRGKHAFIIMNNYPYN 71
LW P+R+ Y+ R P F + P+ + D E L++ RGK + ++N YPYN
Sbjct: 30 LWTPYRMNYLAEAPVKRDPNSSASPAQPFTEIPQLS-DEEGLVVARGKLVYAVLNLYPYN 88
Query: 72 PGHVMVAPYRHVASIEDLTEEEMLEIMKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGV 131
PGH+MV PYR V+ +EDLT+ E E+M ++ I+ V +P GFN+G N+G AG +
Sbjct: 89 PGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSL 148
Query: 132 DGHVHLHIVPRWNGDTNFMPVIADTKVIPESL 163
H+H+H+VPRW GD NF+ +I +KVIP+ L
Sbjct: 149 AEHLHVHVVPRWGGDANFITIIGGSKVIPQLL 180
>pir||D75073 hit-like protein PAB0657 - Pyrococcus abyssi (strain Orsay)
>gi|5458401|emb|CAB49889.1| (AJ248286) HIT-LIKE PROTEIN
[Pyrococcus abyssi]
Length = 147
Score = 113 bits (280), Expect = 1e-24
Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 7/112 (6%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
C FC EN ++Y K I+++NYP NPGH++V P RHV SI +LTE+E L +
Sbjct: 3 CPFCHPKPEN------VVYEDKFIRILLDNYPANPGHLLVVPKRHVTSIGNLTEDEKLAL 56
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNF 149
+K L +KA+++ +K DGFN+G NIGK AG VD H+H+H++PR+ GD ++
Sbjct: 57 LKGIELAVKALKRALKADGFNVGINIGKAAGQTVD-HIHIHVIPRYEGDCDY 107
>pir||D71092 hypothetical protein PH1001 - Pyrococcus horikoshii
>gi|3257415|dbj|BAA30098.1| (AP000004) 150aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 150
Score = 106 bits (263), Expect = 1e-22
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
C FC+ KEN ILY I+++NYP NPGH+++ P RHV +E+L+E E +
Sbjct: 3 CPFCNPIKEN------ILYEDDTIRILLDNYPANPGHLLIVPRRHVTKLEELSEGEKASL 56
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNF-----MPV 152
++ + ++A++K + PDGFN+G NIGK AG V+ H+H+H++PR+N D +
Sbjct: 57 LRGIEIAIEALKKTLNPDGFNVGINIGKAAGQTVE-HLHIHVIPRFNNDCKYPKGGIRKA 115
Query: 153 IADTKVIPESLEQAYDELKKALEEIEDAER 182
+ D K E+ + + + E++E+ R
Sbjct: 116 VLDVKDENLEDEERWTKNRLPREKVEELRR 145
>gb|AAK42339.1| Histidine triad (Hit) family protein, putative [Sulfolobus
solfataricus]
Length = 139
Score = 75.3 bits (182), Expect = 5e-13
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
CIFC+ E RD I+Y ++ +P PGH +V P H + +++E+ + +
Sbjct: 2 CIFCNIV-EGRDHG-YIVYSNDRVVAFLDKFPITPGHTLVVPRTHYENFLEISEDVIPYL 59
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTK 157
I A++K +K DG + NIGK AG V H H HIVP W+ D + M K
Sbjct: 60 CTAVRKISIAVKKALKADGIRILTNIGKSAGQ-VVFHSHFHIVPTWSQDPDIMKDFVPRK 118
Query: 158 VIPESLEQAYDELKKALEE 176
E + Y+ ++KA+ E
Sbjct: 119 ---EQSREYYEYVQKAIIE 134
>sp|P95937|YHIT_SULSO HYPOTHETICAL HIT-LIKE PROTEIN C01039 >gi|7434514|pir||S74070
histidine triad (HIT) protein c0139 - Sulfolobus
solfataricus >gi|1707769|emb|CAA69441.1| (Y08256) HIT
protein [Sulfolobus solfataricus]
Length = 139
Score = 75.3 bits (182), Expect = 5e-13
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
CIFC+ E RD I+Y ++ +P PGH +V P H + +++E+ + +
Sbjct: 2 CIFCNIV-EGRDHG-YIVYSNDRVVAFLDKFPITPGHTLVVPRTHYENFLEISEDVIPYL 59
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTK 157
I A++K +K DG + NIGK AG V H H HIVP W+ D + M K
Sbjct: 60 CTAVRKISIAVKKALKADGIRILTNIGKSAGQ-VVFHSHFHIVPTWSQDPDIMKDFVPRK 118
Query: 158 VIPESLEQAYDELKKALEE 176
E + Y+ ++KA+ E
Sbjct: 119 ---EQSREYYEYVQKAIIE 134
>emb|CAC12267.1| (AL445066) histidine triad (HIT) related protein [Thermoplasma
acidophilum]
Length = 147
Score = 71.8 bits (173), Expect = 5e-12
Identities = 36/106 (33%), Positives = 54/106 (49%), Gaps = 3/106 (2%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
C+FC+ + R I+ M+N P PGH++V P H +I D+ +E+
Sbjct: 7 CVFCN--EIITKRNAAIVAENDMVISFMDNAPVEPGHILVIPKEHFENIFDIDSRYYIEV 64
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRW 143
+A + KA+ K M DG N+G N G A V H H+H++PRW
Sbjct: 65 QLMAKRVAKAVMKAMGADGINIGQNNGWCANQRV-MHFHVHVIPRW 109
>sp|Q58276|Y866_METJA HYPOTHETICAL HIT-LIKE PROTEIN MJ0866 >gi|2826341|gb|AAB98871.1|
(U67530) HIT family protein (hit) [Methanococcus
jannaschii]
Length = 129
Score = 70.6 bits (170), Expect = 1e-11
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
CIFC N + ++Y +H ++ P N GH +V P +H +++ ++E+
Sbjct: 2 CIFCKII--NGEIPAKVVYEDEHVLAFLDINPRNKGHTLVVPKKHYERFDEMPDDELCNF 59
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTK 157
+K ++ ++K + DG+N+ N G+VAG V+ HVH HI+PR+ GD V+ +
Sbjct: 60 IKGVKKTVEVLKK-LGFDGYNIVNNNGRVAGQEVN-HVHFHIIPRYEGDGE---VVKFGE 114
Query: 158 VIPESLEQAYDELK 171
V L++ E+K
Sbjct: 115 VKNVDLDEVLKEIK 128
>pir||B64408 histidine triad (HIT) protein MJ0866 - Methanococcus jannaschii
Length = 129
Score = 70.2 bits (169), Expect = 2e-11
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 38 CIFCDFPKENRDRERLILYRGKHAFIIMNNYPYNPGHVMVAPYRHVASIEDLTEEEMLEI 97
CIFC N + ++Y +H ++ P N GH +V P +H +++ ++E+
Sbjct: 2 CIFCKII--NGEIPAKVVYEDEHVLAFLDINPRNKGHTLVVPKKHYERFDEMPDDELCNF 59
Query: 98 MKLAALIMKAIRKVMKPDGFNLGFNIGKVAGAGVDGHVHLHIVPRWNGDTNFMPVIADTK 157
+K ++ ++K + DG+N+ N G+VAG V+ HVH HI+PR+ GD V+ +
Sbjct: 60 IKGVKKTVEVLKK-LGFDGYNIVNNNGRVAGQEVN-HVHFHIIPRYXGDGE---VVKFGE 114
Query: 158 VIPESLEQAYDELK 171
V L++ E+K
Sbjct: 115 VKNVDLDEVLKEIK 128
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72073201
Number of Sequences: 2977
Number of extensions: 2957945
Number of successful extensions: 7740
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7705
Number of HSP's gapped (non-prelim): 21
length of query: 185
length of database: 189,106,746
effective HSP length: 50
effective length of query: 135
effective length of database: 159,182,396
effective search space: 21489623460
effective search space used: 21489623460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)