BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2304 (PAB2304) DE:Hypothetical protein
(350 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 696 0.0
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 514 e-145
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 352 4e-96
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 324 1e-87
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 304 8e-82
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 264 1e-69
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 259 4e-68
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 243 2e-63
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 231 1e-59
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 210 2e-53
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 199 5e-50
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 142 5e-33
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 120 3e-26
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 114 1e-24
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 105 9e-22
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 105 9e-22
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 96 8e-19
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 94 2e-18
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 90 5e-17
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 87 4e-16
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 83 3e-15
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 83 4e-15
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 80 4e-14
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 80 5e-14
gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfat... 78 2e-13
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat... 77 3e-13
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus... 77 3e-13
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 77 3e-13
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 74 2e-12
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 70 3e-11
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 70 4e-11
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 696 bits (1776), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
Query: 61 DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFREL 120
DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFREL
Sbjct: 61 DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFREL 120
Query: 121 NDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDF 180
NDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDF
Sbjct: 121 NDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDF 180
Query: 181 LKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240
LKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG
Sbjct: 181 LKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240
Query: 241 WLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSL 300
WLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSL
Sbjct: 241 WLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSL 300
Query: 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLRI 350
IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLRI
Sbjct: 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLRI 350
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 514 bits (1309), Expect = e-145
Identities = 247/348 (70%), Positives = 299/348 (84%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
MLFDLRPK RREDIFDRE+EF+KLE+S+E+YP+TLLLGIRRVGKSSLL+A+L+E PGILI
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDYPMTLLLGIRRVGKSSLLKAYLSENPGILI 60
Query: 61 DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFREL 120
DCRELY ERGHITR +LI++LQ + QK S+FK+SL+LKFL +EP+++SL ++F L
Sbjct: 61 DCRELYGERGHITRIDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIEPKEVSLMDIFESL 120
Query: 121 NDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDF 180
N++G+++G+F++AFDEAQYLRFYGSRGGK+LLALFAYAYD+L NLKI+LTGSEVGLLHDF
Sbjct: 121 NEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVLTGSEVGLLHDF 180
Query: 181 LKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240
L I DYESPLYGR+AGEV V+PFD S EFLK GFREVNL+V + IE+A+E+LDGIPG
Sbjct: 181 LGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEKAIEMLDGIPG 240
Query: 241 WLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSL 300
WLV+FGVEY+R D+ +AMKRT EVAKGLI+GEL EL +RS RY++ILR IALGYNRWSL
Sbjct: 241 WLVLFGVEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILRGIALGYNRWSL 300
Query: 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348
IRDYLAVKG PEPRLY LL NLKKM WI E + Y ++DP+V L
Sbjct: 301 IRDYLAVKGIPTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKVTL 348
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 352 bits (893), Expect = 4e-96
Identities = 186/363 (51%), Positives = 255/363 (70%), Gaps = 18/363 (4%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPG-IL 59
MLFD RPK +REDIFDRE+E ++E ++ +YP+TL+LGIRRVGKSSLL+A LNE G I
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY 60
Query: 60 IDCRELYAERGH-ITREELIKELQSTIS----PFQKFQ-SKFKISLNLKFLTLEPR---K 110
ID R+LY E G IT L K L+ I+ PF++ S K + ++ R +
Sbjct: 61 IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR 120
Query: 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILT 170
+SL + LN E GE I+AFDEAQYL+FYG G KE LA+ AYAYD+LPN+ + T
Sbjct: 121 VSLSSLLERLN----EQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFT 176
Query: 171 GSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEE 230
GSEVGLLHDF+ ++DY+SP+YGR+ EV ++PF ++TS+ FL+ GF E ++V E EI+E
Sbjct: 177 GSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKE 236
Query: 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRA 290
AV++L GIPGWLV FG Y++ G F AM+ L+ A+ L+ GELEEL++RSPRYV +L+A
Sbjct: 237 AVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKA 296
Query: 291 IALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWI--VEEDN--TYKIADPVVAT 346
I+LG+NRW I++++ + +IP RL ++LENL+ M+WI V EDN YKI DPVV
Sbjct: 297 ISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVER 356
Query: 347 VLR 349
+++
Sbjct: 357 IIK 359
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 324 bits (821), Expect = 1e-87
Identities = 174/356 (48%), Positives = 234/356 (64%), Gaps = 17/356 (4%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GI 58
MLFD +PK R+ED+FDREEE +L S+ YP+TLLLGIRR GKSS+++ LNE GI
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
Query: 59 LIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFR 118
ID R+ + G ++ E L +L I ++ +N+ + LEP L + ++F
Sbjct: 61 YIDVRKAM-KGGRVSEERLKLQLLGNIR---------RLRINIPGIKLEPTPLDMTDIFD 110
Query: 119 ELNDLGEELGEFIV-AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLL 177
LN G + + IV AFDEAQY RFYGSRGG++ L AY+YD+ ++ + +GSEVGLL
Sbjct: 111 LLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLL 170
Query: 178 HDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237
HDFL D ++PL+GRI E+ ++PF +D S+EFL+ GFREVNL+VP+ IE AV+ LDG
Sbjct: 171 HDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDG 230
Query: 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNR 297
+PGWLV +G Y+ D A++RTL+ A LI EL EL RRS RYV IL+AI+LG NR
Sbjct: 231 VPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINR 290
Query: 298 WSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE----DNTYKIADPVVATVLR 349
WS I++Y+ K I R ALL+NL+KM+WI E Y+I DPVV V+R
Sbjct: 291 WSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVERVIR 346
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 304 bits (771), Expect = 8e-82
Identities = 169/362 (46%), Positives = 233/362 (63%), Gaps = 16/362 (4%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GI 58
+LF L PKT++ED+FDRE E + LE+ LE YP+ ++ G+RRVGKSSL++ FLN+ I
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYPIVVITGLRRVGKSSLVKVFLNKSDLLHI 65
Query: 59 LIDCRELYAERG------HITREELIKELQSTISPFQKFQSKFK----ISLNLKFLTLEP 108
+D R LY G H+TR + E S IS QK + K I+++ + L P
Sbjct: 66 TVDGRRLYETSGGNISSHHLTR--FLGEELSRISKSQKLLNVLKRVRGITVSGTSIELNP 123
Query: 109 RKLSLREVFRELNDLGEELGEFIVAF-DEAQYLRFYGSRGGKELLALFAYAYDSLPNLKI 167
++ SL ++ +LN+ + + IV F DEAQYLR+YGSRGG +LLALFAY YD+ N++
Sbjct: 124 KEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRF 183
Query: 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227
I++GSEVG+LHDFLK+ DY SPL+GR G + V+PF D SV+FL GFREV + +
Sbjct: 184 IISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKI-NFD 242
Query: 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDI 287
+EE V +DGI G+LV+FGV+YL A+K K L E+EELR+RS RY I
Sbjct: 243 VEEIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPFI 302
Query: 288 LRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATV 347
LR IA G N WS +++ KG I + RLY+LLE L+KM++I + + Y+I DPV +
Sbjct: 303 LRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSGYRIVDPVFERI 362
Query: 348 LR 349
LR
Sbjct: 363 LR 364
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 264 bits (668), Expect = 1e-69
Identities = 158/358 (44%), Positives = 222/358 (61%), Gaps = 12/358 (3%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNER--PG 57
MLF PKT+RE++FDRE+E +L++++E+ L LLLG+RR+GKSSLL L E P
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 58 ILIDCRELYAERGHITREELIKELQSTIS----PFQKFQSKFK-ISLNLKFLTLEPRKLS 112
I +D R+ Y+E + R + + L S IS + F + K IS++ + + PR S
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
Query: 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172
+ E+ LND GE G I+AFDEAQYLRF G+ +LA YA D+L NL ILTGS
Sbjct: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTFILTGS 177
Query: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232
EVGLL DFLK + +PL+GR +++++ F+ + S EFL++GF E+ V E EIE+AV
Sbjct: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
Query: 233 ELLDGIPGWLVVFG-VEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAI 291
E LDGI GWL ++G + R AM+ L A+ ++ EL L SPRY IL+AI
Sbjct: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
Query: 292 ALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349
+LGY+RW I+DYL +K I + +LLENL K ++ + + YKI+DPV+ V R
Sbjct: 298 SLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 259 bits (654), Expect = 4e-68
Identities = 150/362 (41%), Positives = 217/362 (59%), Gaps = 15/362 (4%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNERP--G 57
MLF PK +RE++FDRE+E +++EE+++ L LLLG RR+GKSS+L L+E P
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 58 ILIDCRELYAERGHITREELIKELQSTISPFQK-------FQSKFK-ISLNLKFLTLEPR 109
+ +D R++Y+E + R + K L S + ++ F K K + ++ + + P+
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARMFLEKVKGVRISGVNIEINPK 123
Query: 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIIL 169
SL E+ LN+ G E G I+AFDEAQYLRF G+ + AYA D+L NL IL
Sbjct: 124 GFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGAT---RYDGIIAYAIDNLENLTFIL 180
Query: 170 TGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIE 229
TGSEVGLL+DFLK D ++PL+GR ++ ++ F D S+EFL GFRE ++V E+E
Sbjct: 181 TGSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELE 240
Query: 230 EAVELLDGIPGWLVVFG-VEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDIL 288
+AVE LDGIPGWL ++G + + + M ++ A ++ EL L SPRY IL
Sbjct: 241 KAVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRFIL 300
Query: 289 RAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348
+AIALGY+RW I+DYL +K I + LL+NL K ++ D Y I DPV+ VL
Sbjct: 301 KAIALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYVERRDGRYVITDPVLRKVL 360
Query: 349 RI 350
+
Sbjct: 361 SL 362
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 243 bits (614), Expect = 2e-63
Identities = 145/361 (40%), Positives = 218/361 (60%), Gaps = 19/361 (5%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERP--G 57
MLF+ +PKTRRED+++REEE ++E S++ PL +LLGIRR+GKSSLL LNE P
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 58 ILIDCRELYAERG---HITREELIKELQSTISPFQKFQSKFK----ISLNLKFLTLEPRK 110
+ ID R++Y++ G H E+I + + +P ++ + K +S+ L L K
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
Query: 111 -LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIIL 169
+SL EV +N LGE F++A DEAQYLRF ++ L ++A D L N+ IL
Sbjct: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNISFIL 173
Query: 170 TGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIE 229
TGSEVGLL DFL+I D ESPL+GR E+ + F++ S++FL++GF EV + V E E+E
Sbjct: 174 TGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
Query: 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILR 289
E V+ LDGI GWL ++G +A+K+ E AK LI+ E +L+ SPRY ++
Sbjct: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMK 293
Query: 290 AIALGYNRWSLIRDYL-AVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348
A+A G +RW I++ + ++G +I + +L NL + +++ + Y I DP+V
Sbjct: 294 AVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAF 353
Query: 349 R 349
R
Sbjct: 354 R 354
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 231 bits (582), Expect = 1e-59
Identities = 142/363 (39%), Positives = 215/363 (59%), Gaps = 21/363 (5%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLE-NYPLTLLLGIRRVGKSSLLRAFLNER--PG 57
MLFD RPKT ++D++DRE E ++ +E+L+ + LLLGIRR+GKSSLL L E P
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 58 ILIDCRELYAERGHITREELIKELQSTISPFQK--FQSKFKISLNLKFLTLE------PR 109
+D R LY G I ++ L +++ ++ +K + + KI ++K + + R
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
Query: 110 KLSLREVFRELNDLGEELGE-FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKII 168
+ L +F ++ E G+ ++AFDEAQYLR G R L AYA D+LPN+ I
Sbjct: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYD----GLIAYAIDNLPNIIFI 176
Query: 169 LTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228
LTGSEVG+LHDFL + + + PL+GR E+++ F +D S +FL+RGF E+N ++P+ EI
Sbjct: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
Query: 229 EEAVELLDGIPGWLVVFGVEYLRN-GDFGR--AMKRTLEVAKGLIMGELEELRRRSPRYV 285
EE V +DGI GWL ++G YLR G+ ++ AK LI EL + S RY
Sbjct: 237 EEVVNRIDGIVGWLTLYG--YLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYK 294
Query: 286 DILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVA 345
IL+A+ALG RW I++Y+ + +I + + LL+NL K ++ + D Y I DP+V
Sbjct: 295 FILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVK 354
Query: 346 TVL 348
++
Sbjct: 355 EIV 357
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 210 bits (529), Expect = 2e-53
Identities = 134/363 (36%), Positives = 212/363 (57%), Gaps = 29/363 (7%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER--PGI 58
MLFD PK R+D FDRE+E KL+ P+TL+LG+RR GKSS+++ +NE P I
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLKGL--RAPITLVLGLRRTGKSSIIKIGINELNLPYI 58
Query: 59 LIDCRELYAERGHITREELIKELQSTISPFQK-FQSKFKISLNLKFLTLEPRKLSL---- 113
+D R+ + ER +I+ ++ + ELQ I+ K S K N++ + + ++
Sbjct: 59 YLDLRK-FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNR 117
Query: 114 --REVFRELNDLGEELGE--FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIIL 169
R F L + E+ + I+ DEAQ L G LL AYAYD+L +K I+
Sbjct: 118 KDRLSFANLLESFEQASKDNVIIVLDEAQELV---KLRGVNLLPALAYAYDNLKRIKFIM 174
Query: 170 TGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIE 229
+GSE+GLL+D+L++ D ESPL+GR V +KPF ++ ++EFL+RGF+E ++D + E+
Sbjct: 175 SGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEV- 233
Query: 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELE------ELRRRSPR 283
E + GIPGWL FG YL N + A+ +TLE AK LI+ E E E+ R+ R
Sbjct: 234 -VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARK--R 290
Query: 284 YVDILRAIALGYNRWSLIRDYLAV-KGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADP 342
Y++I+R ++ +WS ++ L + +G +I + +Y L L K +WI++E Y ++P
Sbjct: 291 YLNIMRTLS-KCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEP 349
Query: 343 VVA 345
+++
Sbjct: 350 LIS 352
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 199 bits (500), Expect = 5e-50
Identities = 139/371 (37%), Positives = 212/371 (56%), Gaps = 32/371 (8%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNER--PG 57
+ FD RPK++RED++DREEE +L +E PL +L GIRR+GK+SLLR LNE P
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 58 ILIDCRELYAERGHITREELIKELQSTISPF--------QKFQSKFKI--SLNLKFLTLE 107
+++D R + +R +L QS ++ + +K + K+ +++ ++
Sbjct: 84 VIVDLRGVNPN----SRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVS 139
Query: 108 PRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKI 167
+L ++ ++ L E F++A DE Q R GKEL +L A+ YD +
Sbjct: 140 ISWKNLETLYSLISALERE--NFVIALDEVQEAR---GLVGKELASLIAHFYD-YGEVTF 193
Query: 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227
+LTGSEVGLL+DFL I + +PLYGR E+ +K F ++ S+EFL+ GFR+V V +
Sbjct: 194 VLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEI 253
Query: 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRR----SPR 283
++ AVE LDGI GWLV FGV LR+G ++R L+ A L++ EL++ + R
Sbjct: 254 LKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKR 313
Query: 284 YVDILRAIALGYNRWSLIRDYL-AVKGTKIPEPRLYALLENLKKMNWI---VEEDNT-YK 338
Y+ +L+AIA G WS I++ L V+ +I + RL +L +L K + I VE N Y+
Sbjct: 314 YLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
Query: 339 IADPVVATVLR 349
I DPV+ LR
Sbjct: 374 IVDPVLEFALR 384
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 142 bits (355), Expect = 5e-33
Identities = 108/372 (29%), Positives = 177/372 (47%), Gaps = 45/372 (12%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
MLF+ RPK R+D++DRE+E +++S+ +LG+RR+GK+S++ + E I +
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGEWIAVLGMRRIGKTSVVNVAVKEIGAIKV 60
Query: 61 --------DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNL----------- 101
D R+ + H+ LI+E+ I + K+ N+
Sbjct: 61 SINLMRIHDSRKKQYPK-HVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119
Query: 102 KFLTLEPRKLSLREVFRELNDLGEE-LGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160
+ + R + + RE++ + + + ++ DEAQ L G + ++F YD
Sbjct: 120 RAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQEL---AKVNGLDFPSIFHDVYD 176
Query: 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220
+ N II TGS V L+ LK +Y P +GR ++ + F + S EFL++GF E
Sbjct: 177 NCKNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEG 236
Query: 221 LDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRR 280
+ V E+ I+EAV+ LDGIPGWL +FG EY + G T +I + E+R
Sbjct: 237 IKVDESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMG-----TKPRIDEIIEKAINEVRNE 291
Query: 281 SPRYVDILRAIALGYNRWSLIRDYLAVKG--------------TKIPEPRLYALLENLKK 326
+ ++ ++ L Y+ L D L KG IPEPR+Y +L L +
Sbjct: 292 ARNFIFSTQS-PLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVE 350
Query: 327 MNWIV-EEDNTY 337
++I EDN Y
Sbjct: 351 FDFIERREDNEY 362
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 120 bits (297), Expect = 3e-26
Identities = 71/182 (39%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 174 VGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233
+GLLHDFL + D SPLYGR E+ ++ FDK+ S +FL++GF E++L V EN I++ +
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSP----RYVDILR 289
++DGIPGWL + G +Y N D R + VA I + SP RY +LR
Sbjct: 61 MVDGIPGWLTLAGNQYFNNRDLKRVKDLAINVALNEINSLISVKNNVSPIVAKRYRTVLR 120
Query: 290 AIALGYNRWSLIRDYLA-VKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348
IA G N WS I + + +G+ I L +L LKK++ I D Y+ DPV
Sbjct: 121 CIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSII---DENYRFLDPVYKEAS 177
Query: 349 RI 350
R+
Sbjct: 178 RM 179
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 114 bits (283), Expect = 1e-24
Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 25/354 (7%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPG--- 57
+ FD RP+T E +F REEE KL +LE +LG R VGK+SL A NE
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
Query: 58 ---ILIDCR--ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLS 112
+L+D R E + E L + + +IS + S+ LT++ +K +
Sbjct: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTVKLKKSA 150
Query: 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172
R L+D ++ + I+ DE Q ++ +G L ++ +L+II TGS
Sbjct: 151 PAR--RALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHSLQIIFTGS 204
Query: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232
G++ + T Y YGR +++ P+ + + +FL+ GF ++ + E EI + +
Sbjct: 205 YSGVVRRLFEAT-YSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIRDTI 263
Query: 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEE-LRRRSPRYVDILRAI 291
L +PGWL ++GV + +A+K + A ELE L RSP+ ++R +
Sbjct: 264 RNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVVRLL 323
Query: 292 ALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDN--TYKIADPV 343
A G + LI+ T I E L LL L +I+ +D+ Y ADPV
Sbjct: 324 AFGASWGDLIK-------TGISEDALSRLLGILMDELFILNKDDMGIYYFADPV 370
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 105 bits (259), Expect = 9e-22
Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 61/385 (15%)
Query: 12 EDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN--ERPGILIDCRELYAER 69
++ FDRE E ++L E + ++G+RR+GK+S++ L E P + + + +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 70 GH-------------ITREELIKELQSTISPFQKFQSK------------FKISLNLKFL 104
IT + + IS K + K K+S N+ +
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLV 138
Query: 105 TLEP-----RKLSLREVFRELNDLGEELGE------FIVAFDEAQYLRFYGSRGGKELLA 153
+E ++ ++E ++ +L E L E +VA DE QYL+ S+ +
Sbjct: 139 EVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIFH 197
Query: 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLK 213
L + + +++GS VGLL D + P Y + + VK FDK+TS FLK
Sbjct: 198 LLRSKWQFHNKVSYVISGSSVGLLEKIFY--DKKEPFY-QFFFPIYVKQFDKNTSFNFLK 254
Query: 214 RGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLR-NGDFGRAMKRTLE-------V 265
+GFR+ D +N + A+E LDGIP WL FG++ L+ N K+ +E +
Sbjct: 255 QGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFNDPI 314
Query: 266 AKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLK 325
+G+I E +L + + IL+ +A + L KG ++ + L++L
Sbjct: 315 VRGIIQEEYNKLGKNAR---IILKYLAEKGGKGDL-------KGLELSRASINEGLKSLL 364
Query: 326 KMNWIV-EEDNTYKIADPVVATVLR 349
+IV EE Y I DPV+ VL+
Sbjct: 365 GSGYIVKEERGKYAIIDPVIVKVLK 389
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 105 bits (259), Expect = 9e-22
Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 61/385 (15%)
Query: 12 EDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN--ERPGILIDCRELYAER 69
++ FDRE E ++L E + ++G+RR+GK+S++ L E P + + + +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 70 GH-------------ITREELIKELQSTISPFQKFQSK------------FKISLNLKFL 104
IT + + IS K + K K+S N+ +
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLV 138
Query: 105 TLEP-----RKLSLREVFRELNDLGEELGE------FIVAFDEAQYLRFYGSRGGKELLA 153
+E ++ ++E ++ +L E L E +VA DE QYL+ S+ +
Sbjct: 139 EVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIFH 197
Query: 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLK 213
L + + +++GS VGLL D + P Y + + VK FDK+TS FLK
Sbjct: 198 LLRSKWQFHNKVSYVISGSSVGLLEKIFY--DKKEPFY-QFFFPIYVKQFDKNTSFNFLK 254
Query: 214 RGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLR-NGDFGRAMKRTLE-------V 265
+GFR+ D +N + A+E LDGIP WL FG++ L+ N K+ +E +
Sbjct: 255 QGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFNDPI 314
Query: 266 AKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLK 325
+G+I E +L + + IL+ +A + L KG ++ + L++L
Sbjct: 315 VRGIIQEEYNKLGKNAR---IILKYLAEKGGKGDL-------KGLELSRASINEGLKSLL 364
Query: 326 KMNWIV-EEDNTYKIADPVVATVLR 349
+IV EE Y I DPV+ VL+
Sbjct: 365 GSGYIVKEERGKYAIIDPVIVKVLK 389
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 95.6 bits (234), Expect = 8e-19
Identities = 108/388 (27%), Positives = 173/388 (43%), Gaps = 66/388 (17%)
Query: 3 FDLRPKTRREDIFDREEEFRKLEESLENYPL----TLLLGIRRVGKSSLLRAFLNERPGI 58
F RP T E ++ E R++ + L L ++LLG RRVGK+S++ +
Sbjct: 7 FSTRPITDEECLWG--ENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK---- 60
Query: 59 LIDCRELYAERGH----ITREELIKELQSTISPFQKFQSKFKIS-------LNLKFLTLE 107
+RGH I +IS + ++ K+ L+ K L++E
Sbjct: 61 ------FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVE 114
Query: 108 PRKLSLREVFRE----LNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP 163
RK S+ E + L L + ++ FDEAQ L + L DS P
Sbjct: 115 IRKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYP 171
Query: 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223
N+ II TGS G+L +L ++ P + R A + + VEFLK GFR ++V
Sbjct: 172 NISIIFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEV 230
Query: 224 -PENEIEEAVELLDGIPGWLVVFG---VEYLRNG-DFGRAMKRTLEVAKGLIMGE----L 274
E E+E AV+ L GIPG++ +G V ++NG A+ + LE ++ + E L
Sbjct: 231 NDELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDL 290
Query: 275 EELRR--RSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPE--------PR----LYAL 320
E SP YV++LR +A Y A++G ++ + PR +Y
Sbjct: 291 EAFINVYSSPIYVEVLRVLAKAYPS--------ALRGAEVYKELDKMNVAPRRMQHIYKY 342
Query: 321 LENLKKMNWIVEEDNTYKIADPVVATVL 348
L+ L+K+ +I + Y I DP++ V+
Sbjct: 343 LDTLEKVGFIRSDGKRYWIEDPLLRIVV 370
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 94.0 bits (230), Expect = 2e-18
Identities = 98/376 (26%), Positives = 174/376 (46%), Gaps = 46/376 (12%)
Query: 3 FDLRPKTRREDIFDREEEFRKLEESLENYPL----TLLLGIRRVGKSSLLRAFLNERPGI 58
F RP + ++D+ RK+ + L L +LLG RRVGK+S++ ++++
Sbjct: 7 FTTRPIMEEDCLWDKR---RKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNV-ISQKFAK 62
Query: 59 LIDCRELYAERGHI--TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREV 116
+ +Y R I +++ + + + ++LK +++E RK S+ E
Sbjct: 63 RRNHHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIEEF 122
Query: 117 FRELNDLGEELGEF----IVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172
+ + L L + ++ FDEAQ L + L DS PN+ +I TGS
Sbjct: 123 TSDFSTLVRILSQNSERGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYPNISMIFTGS 179
Query: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEA 231
GLL ++L + P + R + + ++ + +EFLK+GF + V E E+E A
Sbjct: 180 MPGLLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERA 238
Query: 232 VELLDGIPGWLVVFG---VEYLRNG-DFGRAMKRTLEVAKGLIMGE----LEELRR--RS 281
V+ L GIPG++ +G + +R+G +A+ R LE +K + E LE S
Sbjct: 239 VKELGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNS 298
Query: 282 PRYVDILRAIALGYNRWSLIRDYLAVKGTKIPE---------PRLYALLENLKKMNWIVE 332
P YV++++ +A Y A+KG ++ +Y L+ L+K+ +I
Sbjct: 299 PIYVEVMKVLASSYP--------TALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFIRS 350
Query: 333 EDNTYKIADPVVATVL 348
E Y I DP++ +L
Sbjct: 351 EGGKYWIEDPILRELL 366
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 89.7 bits (219), Expect = 5e-17
Identities = 99/378 (26%), Positives = 167/378 (43%), Gaps = 61/378 (16%)
Query: 15 FDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER--PGILIDCRELY-AERGH 71
F RE+E L + L+G RR+GK+SLL A L P LI E E+G
Sbjct: 13 FGREKEIESLLGLYKLGQPVGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKGF 72
Query: 72 ITREEL--------------------IKELQSTISPFQKFQSKFKISLNLKFL--TLE-- 107
E L +++ +S + + + K++ N+ L T+E
Sbjct: 73 DFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQVKVTFNIPELYSTIELT 132
Query: 108 ----PRKLSLREVFRELNDLGEELGE------FIVAFDEAQYLRFYGSRGGKELLALFAY 157
+K L + FR+ DL + L E ++A DE QYLR + + +
Sbjct: 133 LDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLRL-AKQSIPGIFHIMRS 191
Query: 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR 217
+ N+ +++GS +G++ + L + P Y + + V PFD+ TS+EFL++GF
Sbjct: 192 KWQFHKNVTYVISGSLIGMMMELL--SSRNQPFY-QFFYLMKVNPFDRKTSIEFLRKGFE 248
Query: 218 EVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEEL 277
NLDV EIE V+ +DG P WL + G++ + + +L L+ +L
Sbjct: 249 VNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVTALENDL 308
Query: 278 RRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEP---RLYALLENLKK-MNW-IVE 332
+R SP +L+ +A ++ G P+ L + LK+ MN+ +VE
Sbjct: 309 KRLSPTARAVLKNLA-------------SLGGAGSPKDLGLDLLTVTRGLKQLMNYGLVE 355
Query: 333 ED--NTYKIADPVVATVL 348
++ Y+I DP++ L
Sbjct: 356 KEGRGIYRIVDPILIKYL 373
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 86.6 bits (211), Expect = 4e-16
Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 14/167 (8%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE--RPGI 58
MLFD RPK RED+FDRE+E +++ ++ N PL L+ G+RR+GK+S+L+ LNE P +
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNI-NRPLILITGVRRIGKTSVLKVALNEIKIPHV 59
Query: 59 LIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFR 118
+IDCR L R + +R +L + S K + + ++ +++ + L+ R
Sbjct: 60 IIDCRNL---RPNYSRGDLYSLFSNAFS--SKLSTFLDVLSKIRGVSILGNSVELKWKGR 114
Query: 119 E---LNDLGEELGE--FIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160
E L+DL + L E ++ DEAQ LR S KE +A AY YD
Sbjct: 115 EYVSLSDLFDHLNEKRIVIGIDEAQKLRGPLSNEIKEAIA-HAYDYD 160
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 83.5 bits (203), Expect = 3e-15
Identities = 86/299 (28%), Positives = 136/299 (44%), Gaps = 51/299 (17%)
Query: 16 DREEEFRKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
+R+ E + LE + E + L ++ G RRVGK++LLR FL + GI C ++RG+
Sbjct: 12 NRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC----SQRGY--- 64
Query: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
E+ +K IS F +F+ S ++ F+ L G+ +V F
Sbjct: 65 EKDLKRFSQEISSFIGAPVRFE---------------SFKDAFKFLRG----QGKLLVIF 105
Query: 135 DEAQYLRFYGSRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY 191
DE YL K +++ F D + + IIL GS VG++ +I Y+SPLY
Sbjct: 106 DEFPYL----IEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMME--REILSYKSPLY 159
Query: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVF--GVEY 249
GR +G + VKPF VE+ + F + + GIP ++ F G +
Sbjct: 160 GRASGVLKVKPFRFFDMVEWFGKDF---------ERLLRLYGVTWGIPKYMEFFKTGSDD 210
Query: 250 LRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVK 308
+F A+ L+M EL R RY+ I+ AIA+G R + I Y+ ++
Sbjct: 211 EIINNFFNPSAFLFNEARLLLMEEL----RNPTRYMQIIEAIAMGKTRLNEIAQYVGIE 265
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 83.1 bits (202), Expect = 4e-15
Identities = 95/347 (27%), Positives = 153/347 (43%), Gaps = 62/347 (17%)
Query: 16 DREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
DRE E LE EN P +L G RRVGK+ LL+ F ++ T
Sbjct: 5 DRELEMEILEREWENRPSFVVLYGRRRVGKTRLLKEFSKDKRTFFF------------TF 52
Query: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
E IKE+Q + F+K ++F L F RKL R+ L L E++ + ++
Sbjct: 53 PEAIKEVQ--MKEFKKTMAEF---LGDDFA----RKLETRDWLDLLRYLAEKVDDCLIVL 103
Query: 135 DEAQYLRFYGSRGGKELLALFAYAYDSLPNLK---IILTGSEVGLLHDFLKITDYESPLY 191
DE Y + +++L+ +D + + K ++++GS +G++ D + Y SPLY
Sbjct: 104 DEFTY----AIKSERKILSDLQRTWDDILSEKKVMLVISGSLLGMMWD--DVLSYASPLY 157
Query: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFG----V 247
GR + +KPFD +++F PE I L+ GIP +L + G V
Sbjct: 158 GRRTRSMNLKPFDYPNALKFFSD---------PEFGI-RVYMLVGGIPSYLKLAGRYNTV 207
Query: 248 EYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAV 307
E +F + L+ EL EL+ Y ILRAIA G R I +++
Sbjct: 208 EEFIREEFLSDYGFFYDEPYVLLGEELRELK----TYFSILRAIAEGNRRLERIANFIG- 262
Query: 308 KGTKIPEPRLYALLENLKKMNWIVEED--------NTYKIADPVVAT 346
+P +Y ++ L ++ + E + Y+I DP++ T
Sbjct: 263 ----LPMRSVYPYVDTLVRLGLVERESPILGSRKVSLYRIKDPMLLT 305
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 80.0 bits (194), Expect = 4e-14
Identities = 90/309 (29%), Positives = 135/309 (43%), Gaps = 61/309 (19%)
Query: 16 DREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
+R+ E LE+ E L ++ G RRVGK++LLR FL E+ GI C + RG+
Sbjct: 12 NRKRELETLEKLYEKGANLVVIYGRRRVGKTALLRKFLEEKRGIYFLC----SRRGY--- 64
Query: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
E+ +K +S F F I L+ E F + + + G+ +V
Sbjct: 65 EKDLKRFSQELSKF------FGIPLSF-------------EDFEDAFEFLSKQGKLVVVI 105
Query: 135 DEAQYLRFYGSRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY 191
DE YL K ++++F D + + +IL GS +G++ + Y++PLY
Sbjct: 106 DEFPYL----IESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEK--DVLGYKAPLY 159
Query: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD---GIPGWLVVF--- 245
GR G + VKPF VE+ R F E+ V L G+P ++ F
Sbjct: 160 GRAQGIMKVKPFRFFDMVEWYGRDF------------EKLVRLYGVTWGVPRYMEFFREG 207
Query: 246 -GVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDY 304
E +RN F AK L+M EL R Y +I+ AIALG R S I +Y
Sbjct: 208 SDEEIIRN--FFDPSSFLFNEAKLLLMEEL----RNPAVYGEIIEAIALGNTRLSEIANY 261
Query: 305 LAVKGTKIP 313
+ +P
Sbjct: 262 SMIDAKDLP 270
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 79.6 bits (193), Expect = 5e-14
Identities = 96/351 (27%), Positives = 149/351 (42%), Gaps = 71/351 (20%)
Query: 16 DREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
DRE+E + LE+ + P L ++ G RR GK+ LL F +P E TR
Sbjct: 7 DREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFME-------DTR 59
Query: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
E I+ L+ ++ F L L F P +F+ L E + ++
Sbjct: 60 ERQIRRLREELA------EHFNDELFLSFNDWYP-------LFKYLASKVTE--KTLIIL 104
Query: 135 DEAQYLRFYGSRGGKELLALFAYAYD---SLPNLKIILTGSEVGLLHDFLKITDYESPLY 191
DE Y + + +++ A+D S + ++L+GS +G++ D ++ Y SPLY
Sbjct: 105 DEFSY----AIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMID--EVLSYSSPLY 158
Query: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLR 251
GR +KP S++F EV L E L+ GIP +L++ R
Sbjct: 159 GRRTMSFHLKPLTLFNSLKFFDS--FEVGL--------EMYMLVGGIPAYLIIAS----R 204
Query: 252 NGDFGRAMKRTLEVAKG--------LIMGELEELRRRSPRYVDILRAIALGYNRWSLIRD 303
D R ++ T +G L+ GEL EL+ Y IL A A G R S I
Sbjct: 205 YEDTRRFIEETFLRTEGFFYDEPYILLSGELRELK----TYFSILSATASGKTRASEIAS 260
Query: 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE--------DNTYKIADPVVAT 346
Y ++G KI Y L+ L ++ +I E YK+ DP++ T
Sbjct: 261 YAGLEGRKI-----YPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPMLLT 306
>gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 196
Score = 77.6 bits (188), Expect = 2e-13
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
M+FDL PK E++ RE+E + + ++ G R +GK+SL++ +NE I
Sbjct: 1 MIFDLHPKETIEELVGREKEVEHCISQILSKNWIIIGGQREIGKTSLMKVVINE-----I 55
Query: 61 DCRELYAE-----RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT--LEPRKLSL 113
RE A RG + L+ L S I+ +K +FK+++N + +E R S
Sbjct: 56 KKREQIAGIYINLRGVRSLNSLLTILVSEINK-EKISWRFKVNINFLITSAGIEIRGGSK 114
Query: 114 REVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173
R V L +L E ++AFDE Q L F K+ L + Y + P + +I +GS
Sbjct: 115 RRVVNSLIELLNSSDEIVIAFDEVQELSF----ASKQFLDILGNVYATNPKVHMIFSGSY 170
Query: 174 VGLLHDFLKITDYESPLYGRIAGEV 198
VGL+ L +SPL+GR E+
Sbjct: 171 VGLVKALLS-PPSDSPLHGRPPTEI 194
>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 360
Score = 77.3 bits (187), Expect = 3e-13
Identities = 95/380 (25%), Positives = 171/380 (45%), Gaps = 64/380 (16%)
Query: 6 RPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65
R T ++ FDRE+ L + +L RR+GKSSLL ++ + G ++
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAILAPRRMGKSSLLN-YIKIKLGNEYIVAKI 66
Query: 66 YAERGHITREELIKELQS-----TISPFQKFQSKFKISL----------NLKFLTLEPRK 110
E G + EE EL S +S K ++K IS ++K L++ +
Sbjct: 67 SLE-GITSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQN 125
Query: 111 LSL----REVFRE--------LND-------LGEELGE-FIVAFDEAQYLRFYGSRGGKE 150
L L +F+E L+D + E+ G+ ++ DE Q +R + +
Sbjct: 126 LELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVL-KQPFPK 184
Query: 151 LLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVE 210
+L L N++II++GSE G++ + IT+ + P Y E L K FDK+TS+
Sbjct: 185 ILELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYNYFKIERL-KSFDKETSIR 241
Query: 211 FLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK-RTLEVAKGL 269
FL G + + E+ EL +GIP WL + G+ + R + ++ +E+
Sbjct: 242 FLNEGLK----GKCKEYYEKVYELTEGIPAWLNLAGLIFERECNIEAILEDPNVEIE--- 294
Query: 270 IMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNW 329
+ +LE L + + +L+ +A G K ++I +Y +++ LK
Sbjct: 295 LKKDLEGLTKNE---IKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339
Query: 330 IVEEDNTYKIADPVVATVLR 349
+ + ++ YKI DP+++ L+
Sbjct: 340 VDKINDEYKIIDPILSFYLK 359
>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
>gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
[Sulfolobus solfataricus]
Length = 360
Score = 77.3 bits (187), Expect = 3e-13
Identities = 95/380 (25%), Positives = 171/380 (45%), Gaps = 64/380 (16%)
Query: 6 RPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65
R T ++ FDRE+ L + +L RR+GKSSLL ++ + G ++
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAILAPRRMGKSSLLN-YIKIKLGNEYIVAKI 66
Query: 66 YAERGHITREELIKELQS-----TISPFQKFQSKFKISL----------NLKFLTLEPRK 110
E G + EE EL S +S K ++K IS ++K L++ +
Sbjct: 67 SLE-GITSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQN 125
Query: 111 LSL----REVFRE--------LND-------LGEELGE-FIVAFDEAQYLRFYGSRGGKE 150
L L +F+E L+D + E+ G+ ++ DE Q +R + +
Sbjct: 126 LELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVL-KQPFPK 184
Query: 151 LLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVE 210
+L L N++II++GSE G++ + IT+ + P Y E L K FDK+TS+
Sbjct: 185 ILELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYNYFKIERL-KSFDKETSIR 241
Query: 211 FLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK-RTLEVAKGL 269
FL G + + E+ EL +GIP WL + G+ + R + ++ +E+
Sbjct: 242 FLNEGLK----GKCKEYYEKVYELTEGIPAWLNLAGLIFERECNIEAILEDPNVEIE--- 294
Query: 270 IMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNW 329
+ +LE L + + +L+ +A G K ++I +Y +++ LK
Sbjct: 295 LKKDLEGLTKNE---IKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339
Query: 330 IVEEDNTYKIADPVVATVLR 349
+ + ++ YKI DP+++ L+
Sbjct: 340 VDKINDEYKIIDPILSFYLK 359
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 77.3 bits (187), Expect = 3e-13
Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 52/308 (16%)
Query: 15 FDREEEFRKLEE--SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHI 72
+DRE E +KL E S + ++ G RRVGK++L+R FL + GI + E + +
Sbjct: 11 YDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGE---KDEAL 67
Query: 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIV 132
E+ +E++ +S + + + S SL E+F L D ++ + ++
Sbjct: 68 LLEDFTREVEMALSSYLPPYVRLRFS-------------SLEELFEFLFDFSRDI-KLVI 113
Query: 133 AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYG 192
DE Q R L L+ + N+ +I GS VG++ D + PL+G
Sbjct: 114 ILDEFQNFRSVKPSLFSSLQKLWDLKGED-SNVVLIAVGSYVGMMKRI--FMDRKEPLFG 170
Query: 193 RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRN 252
R+ + +KPFD R + VN +P + E L G+P +L+ YLR+
Sbjct: 171 RVDEWIKLKPFD-------FWRAYNFVN--IPARDFVEIFSALGGMPKYLL-----YLRH 216
Query: 253 GDFGRAMKRTLEVAKGLIMGELEELR------------RRSPRYVDILRAIALGYNRWSL 300
G T+E + L EL LR R Y IL A++LGY
Sbjct: 217 YYNG----NTIETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKE 272
Query: 301 IRDYLAVK 308
I D +K
Sbjct: 273 ISDKTGLK 280
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 74.1 bits (179), Expect = 2e-12
Identities = 90/318 (28%), Positives = 136/318 (42%), Gaps = 57/318 (17%)
Query: 16 DREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITRE 75
+R EE KL LE L ++ G RRVGK+ L+ L + P + H+ +E
Sbjct: 16 NRSEELEKLRAYLEKRSLIIVYGRRRVGKTRLIIEALKDTPHVY-----------HLCKE 64
Query: 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFD 135
E +E ++S + + + + +FL P S E+F L +G + D
Sbjct: 65 EEPRETLVSLS-----KKLYHATGDAQFLESPPS--SFDELFELLGGIG-----ITLVLD 112
Query: 136 EAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIA 195
E L + +L L +D ++L GS V ++ +TDY SP++GR
Sbjct: 113 EFPLL----VKNYPRILGLLQEYWDFGEGGSVVLCGSSVSMMKG---LTDYGSPIHGRRT 165
Query: 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE---LLDGIPGWLVVFG-----V 247
V VKP + FR V P EE V +LDGIP +L+ F
Sbjct: 166 ISVKVKPLE-----------FRHVGEFFPGYSPEELVRAYGVLDGIPEYLLRFDPSQSVE 214
Query: 248 EYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAV 307
E + FGR E A+ L+ EL +L Y IL AIA GY ++ I+ +
Sbjct: 215 ENVIREFFGRGY--LYEEAELLLRYELRDL----STYNTILEAIAAGYTSFNEIKTKTGM 268
Query: 308 KGTKIPEPRLYALLENLK 325
G+K+ R + LE L+
Sbjct: 269 DGSKL--SRYLSTLEELE 284
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 70.2 bits (169), Expect = 3e-11
Identities = 89/328 (27%), Positives = 139/328 (42%), Gaps = 58/328 (17%)
Query: 16 DREEEFRKLEE--SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHIT 73
DRE+E L + S L ++ G RR+GK+ LL+ FL E GI +
Sbjct: 9 DREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYL------------- 55
Query: 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVA 133
L +E ++ + F + +++ N FL P + + F L G+ +V
Sbjct: 56 ---LAEESETVLEDFSERLAEY---FNDPFLKENPLR-NWGAFFAYL--AGKSSERLVVV 106
Query: 134 FDEAQYLRFYGSRGGKELLALFAYAYD---SLPNLKIILTGSEVGLLHDFLKITDYESPL 190
DE QY+ ++ K+ L+ +D S + +IL GS V + L +SP+
Sbjct: 107 IDEVQYI----AKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSA---KSPI 159
Query: 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYL 250
YGR G V+ D + +F DV + + G+P +L +Y
Sbjct: 160 YGRRTGAWKVEEMDFFNAWKFH---------DVDAETVVHIYSVFGGVPQYLA----DYN 206
Query: 251 RNGDFGRAMKRTLEVAKGLIMGE-----LEELRRRSPRYVDILRAIALGYNRWSLIRDYL 305
N DF ++ L ++KG + L++ R RY ILRAIALGY R+ I D
Sbjct: 207 PNLDFWENLRELL-LSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIAD-- 263
Query: 306 AVKGTKIPEPRLYALLENLKKMNWIVEE 333
+I L L L +M +I EE
Sbjct: 264 ---KARIEAKSLAKYLHVLSEMGYIEEE 288
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 69.9 bits (168), Expect = 4e-11
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 47/287 (16%)
Query: 16 DREEEFRKLEESLEN--YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHIT 73
DR++E LEE L++ ++ G RRVGK++L+ FL G+ + RE
Sbjct: 41 DRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARET-------- 92
Query: 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVA 133
S I ++F + N FL P + SL F L+ E+ FI+A
Sbjct: 93 ---------SEIENLERFSLRLAEYFNDSFLKKNPLR-SLDAFFEYLSTKAEK--PFIIA 140
Query: 134 FDEAQYLRFYGSRGGKELLALFAYAYD---SLPNLKIILTGSEVGLLHDFLKITDYESPL 190
DE YL +G K L ++ ++ S + +I++GS V + ++ Y+SPL
Sbjct: 141 IDEFPYL----VKGNKALPSILQEYWEMKLSKKKIFLIVSGSSVSMTE---RLLGYKSPL 193
Query: 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE---LLDGIPGWLVVFGV 247
YGR ++ +KP D + EFL P+ +E+ V +L G P +L+ F
Sbjct: 194 YGRRTAQLKLKPLDFFNAREFL-----------PKYSLEDFVRVYGILGGTPAYLLEFSD 242
Query: 248 EYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALG 294
E + ++ R + G + L E Y I+ AIA G
Sbjct: 243 EKSLEENL-KSYFRVDSLLYGDALFILREELDEPRNYFAIMEAIARG 288
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127439652
Number of Sequences: 2977
Number of extensions: 5416394
Number of successful extensions: 17732
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17638
Number of HSP's gapped (non-prelim): 33
length of query: 350
length of database: 189,106,746
effective HSP length: 55
effective length of query: 295
effective length of database: 156,189,961
effective search space: 46076038495
effective search space used: 46076038495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)