BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2305 (PAB2305) DE:Hypothetical protein
(404 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75192 hypothetical protein PAB2305 - Pyrococcus abyssi (st... 812 0.0
pir||B71224 hypothetical protein PH0053 - Pyrococcus horikoshii ... 734 0.0
gb|AAF69253.1| (AF201092) NOP56 homolog [Sulfolobus acidocaldarius] 356 2e-97
pir||B72528 probable nucleolar protein NOP5 APE2199 - Aeropyrum ... 349 4e-95
gb|AAK41215.1| Pre mRNA splicing protein [Sulfolobus solfataricus] 340 2e-92
sp|Q58105|Y694_METJA HYPOTHETICAL PROTEIN MJ0694 >gi|2128446|pir... 315 7e-85
pir||B69029 pre-mRNA splicing protein PRP31 - Methanobacterium t... 271 1e-71
dbj|BAB00855.1| (AB024033) nucleolar protein [Arabidopsis thaliana] 199 4e-50
gb|AAF02835.1|AC009894_6 (AC009894) nucleolar protein [Arabidops... 196 4e-49
sp|Q21276|YZVL_CAEEL HYPOTHETICAL 54.5 KD PROTEIN K07C5.4 IN CHR... 194 2e-48
gb|AAF55992.1| (AE003738) CG13849 gene product [Drosophila melan... 194 2e-48
emb|CAB92783.1| (X60437) nucleolar protein [Drosophila subobscura] 192 6e-48
pir||T40586 nucleolar protein involved in pre-rRNA processing - ... 192 6e-48
emb|CAC01444.1| (AL049712) dJ686C3.2 (nucleolar protein hNop56) ... 189 4e-47
gi|11421205 nucleolar protein (KKE/D repeat) [Homo sapiens] 188 9e-47
gi|5453794 nucleolar protein (KKE/D repeat) [Homo sapiens] >gi|2... 188 1e-46
emb|CAB60723.1| (AJ249465) DNop5 protein [Drosophila melanogaster] 184 1e-45
gb|AAF52455.2| (AE003615) nop5 gene product [Drosophila melanoga... 184 2e-45
gi|6324886 57 kDa nucleolar protein; Nop58p [Saccharomyces cerev... 183 2e-45
pir||T32941 hypothetical protein W01B11.3 - Caenorhabditis elega... 183 3e-45
emb|CAA10127.1| (AJ012686) nucleolar protein [Cicer arietinum] 182 5e-45
gi|6323226 homology to microtubule binding proteins and to X9056... 182 6e-45
pir||T45146 probable RNA processing protein [imported] - Methano... 182 9e-45
dbj|BAA31260.1| (AB015431) SAR DNA binding protein [Oryza sativa] 181 1e-44
pir||T06377 SAR DNA-binding protein-1 - garden pea >gi|3132696|g... 180 3e-44
pir||T06379 SAR DNA-binding protein 2 - garden pea >gi|3132698|g... 176 3e-43
gb|AAF27012.1|AC009177_2 (AC009177) putative SAR DNA-binding pro... 173 3e-42
sp|O04658|Y412_ARATH HYPOTHETICAL 47.9 KD PROTEIN M021B04.12 >gi... 173 4e-42
gi|7706254 nucleolar protein NOP5/NOP58 [Homo sapiens] >gi|46802... 171 1e-41
pir||T17299 hypothetical protein DKFZp564H2171.1 - human (fragme... 171 1e-41
gi|11429894 nucleolar protein NOP5/NOP58 [Homo sapiens] 171 1e-41
gi|9256555 SIK similar protein [Mus musculus] >gi|2996194|gb|AAC... 170 3e-41
pir||T50180 nucleolar protein NOP5-like protein [imported] - fis... 170 3e-41
gi|11120704 Nopp140 associated protein [Rattus norvegicus] >gi|6... 169 5e-41
gb|AAC23535.1| (AF069782) unknown [Rattus sp.] 168 1e-40
sp|O04656|Y413_ARATH HYPOTHETICAL 48.8 KD PROTEIN M021B04.13 >gi... 161 1e-38
gb|AAG19551.1| (AE005045) archaeal nucleolar protein homolog; No... 139 4e-32
gb|AAF29084.1|AF161469_1 (AF161469) HSPC120 [Homo sapiens] 134 2e-30
gi|11499670 conserved hypothetical protein [Archaeoglobus fulgid... 131 1e-29
gb|AAF60425.1| (AC006708) contains simlarity to Saccharomyces ce... 116 3e-25
gi|7661654 DKFZP566J153 protein [Homo sapiens] >gi|4914604|emb|C... 115 1e-24
gb|AAF49655.1| (AE003532) CG6876 gene product [Drosophila melano... 113 5e-24
emb|CAC12367.1| (AL445067) nucleolar protein Nop56 related prote... 109 4e-23
pir||T02269 hypothetical protein T13D8.6 - Arabidopsis thaliana ... 104 1e-21
pir||T39311 probable pre-mrna splicing factor - fission yeast (... 97 4e-19
gi|6321528 pre-mRNA splicing protein; Prp31p [Saccharomyces cere... 94 4e-18
emb|CAB62868.2| (AL035475) conserved hypothetical protein, MAL4P... 93 5e-18
sp|P49704|PR31_YEAST PRE-MRNA SPLICING FACTOR PRP31 >gi|969101|g... 88 2e-16
pir||T47872 hypothetical protein T4C21.20 - Arabidopsis thaliana... 85 1e-15
emb|CAC00186.1| (AL160371) probable sar DNA-binding protein-1 [L... 80 3e-14
>pir||A75192 hypothetical protein PAB2305 - Pyrococcus abyssi (strain Orsay)
>gi|5457493|emb|CAB48984.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 404
Score = 812 bits (2075), Expect = 0.0
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MKAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGEFVKDLEVFLGELKEKGYD 60
MKAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGEFVKDLEVFLGELKEKGYD
Sbjct: 1 MKAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGEFVKDLEVFLGELKEKGYD 60
Query: 61 EFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVELTRLRI 120
EFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVELTRLRI
Sbjct: 61 EFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVELTRLRI 120
Query: 121 QEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTI 180
QEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTI
Sbjct: 121 QEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTI 180
Query: 181 GHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKE 240
GHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKE
Sbjct: 181 GHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKE 240
Query: 241 LEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLR 300
LEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLR
Sbjct: 241 LEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLR 300
Query: 301 TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA 360
TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA
Sbjct: 301 TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA 360
Query: 361 RIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKRR 404
RIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKRR
Sbjct: 361 RIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKRR 404
>pir||B71224 hypothetical protein PH0053 - Pyrococcus horikoshii
>gi|3256438|dbj|BAA29121.1| (AP000001) 404aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 404
Score = 734 bits (1874), Expect = 0.0
Identities = 357/397 (89%), Positives = 382/397 (95%), Gaps = 2/397 (0%)
Query: 1 MKAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGEFVKDLEVFLGELKEKGYD 60
M+AFIAENVRGIYAFDE+GKL+ KRY+TDKPEK+LD LLKGE VKDLE FL EL+EKGYD
Sbjct: 4 MRAFIAENVRGIYAFDEDGKLVGKRYFTDKPEKILDGLLKGELVKDLEEFLNELREKGYD 63
Query: 61 EFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVELTRLRI 120
EF+FEH EL+RKAKELG+NA TEFPN+AGERLRSNPEEFLGENW++DYY VGV LTR+RI
Sbjct: 64 EFIFEHPELSRKAKELGFNATTEFPNLAGERLRSNPEEFLGENWFDDYYNVGVALTRMRI 123
Query: 121 QEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTI 180
QEQSGARDKMVIQAIEALDD+DKVINLLVSRLREWYSLHFPE+DEILPRHPQYV+FVK I
Sbjct: 124 QEQSGARDKMVIQAIEALDDVDKVINLLVSRLREWYSLHFPELDEILPRHPQYVAFVKAI 183
Query: 181 GHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKE 240
GHRDNV+EEKLRELGLS+EKIKKI+EAKEKTMGAWMDETDI +VQ FAEEIDRLYKLRKE
Sbjct: 184 GHRDNVDEEKLRELGLSDEKIKKIIEAKEKTMGAWMDETDIAIVQHFAEEIDRLYKLRKE 243
Query: 241 LEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLR 300
LEDYIDKAMDDVAPNLKALVGAKL ARLISLAGGL+ELAMLPSSTIQVLGAEKALFRHLR
Sbjct: 244 LEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLR 303
Query: 301 TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA 360
TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA
Sbjct: 304 TGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEA 363
Query: 361 RIREIKEKYPKPPKRKREER--RKPWKEKKKKKKKKK 395
RI+EIKEKYP+PPKR++EER RKPWKEKKKKKKKKK
Sbjct: 364 RIKEIKEKYPRPPKRRKEERKGRKPWKEKKKKKKKKK 400
>gb|AAF69253.1| (AF201092) NOP56 homolog [Sulfolobus acidocaldarius]
Length = 412
Score = 356 bits (905), Expect = 2e-97
Identities = 188/412 (45%), Positives = 271/412 (65%), Gaps = 9/412 (2%)
Query: 1 MKAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGEFVKDLEVFLGELKEKGYD 60
MK ++ E+ G + +DE+GKLI + KV + L++ E L + + + D
Sbjct: 1 MKIYLVEHAIGSFGYDESGKLIDFVPNSKDIGKVTEALIENEKGTPLPSAIELINKLKPD 60
Query: 61 EFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFL--------GENWYEDYYKVG 112
+ V E+ ++LG A +E N+ E R N + Y Y++
Sbjct: 61 QVVVENDAEVPALQKLGIKASSEIRNMGTEIFRENLVNVAIQTKIVNSEDELYNFLYELS 120
Query: 113 VELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQ 172
+E TR +++ + RD + IQAI A+DD+DK INL RLREWYS+HFPE+D+++ H
Sbjct: 121 MEYTRRKLRGAASKRDLLAIQAIRAIDDIDKTINLFSERLREWYSIHFPELDKLIEDHWL 180
Query: 173 YVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEID 232
Y S + GHRDN+ + L E+GL++EKI+KI+ A + ++GA + + DI+ V+ ++ I
Sbjct: 181 YASIISKFGHRDNLSDTGLEEIGLNKEKIEKIMNAAKNSIGADITDVDIKSVKTLSDIIL 240
Query: 233 RLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAE 292
+LY+ R EL DY + M +VAPN+ +LVG L ARL+SLAG L +LA +P+STIQVLGAE
Sbjct: 241 KLYEERLELTDYTESVMREVAPNVTSLVGPTLGARLLSLAGSLEDLAKMPASTIQVLGAE 300
Query: 293 KALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAE 352
KALFR LR G +PPKHGVI+QYPAI+ SP WQRGKIARALA KLAIAARVDYFSG++I
Sbjct: 301 KALFRALRKGGRPPKHGVIFQYPAIHNSPRWQRGKIARALAAKLAIAARVDYFSGKFIGN 360
Query: 353 ELKKELEARIREIKEKYPKPPKRKREER-RKPWKEKKKKKKKKKREKEKGKR 403
+L +EL+ RI EI+EKY +PP RK+E++ + K+++K KK K+R K++G+R
Sbjct: 361 KLNEELKKRIDEIREKYAQPPPRKQEQKVEQKGKKERKNKKDKRRGKKEGRR 412
>pir||B72528 probable nucleolar protein NOP5 APE2199 - Aeropyrum pernix (strain
K1) >gi|5105898|dbj|BAA81210.1| (AP000063) 423aa long
hypothetical nucleolar protein NOP5 [Aeropyrum pernix]
Length = 423
Score = 349 bits (885), Expect = 4e-95
Identities = 194/415 (46%), Positives = 269/415 (64%), Gaps = 14/415 (3%)
Query: 2 KAFIAENVRGIYAFDENGKLIAKRYYTDKPEKVLDKLLKGE---FVKDLEVFLGELKEKG 58
+ +IA+ G A ++G + + ++ + + L+ E F E +L E G
Sbjct: 10 RVYIADLAIGPVALRDDGSIEEYELFPRSVDEAVTEALRLEEEGFTLAHEKLGKKLVESG 69
Query: 59 YDEFVFEHSELTRKAKELGYNAKTEFPN----IAGERLRSNPEEFLGENWYED-----YY 109
V E + R +LG + K E N A ERL S E LG ED Y
Sbjct: 70 VGSLVVESEDTARHFSKLGLSVKVEPGNNVALSARERLVSLGVE-LGFFGSEDDALSWLY 128
Query: 110 KVGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPR 169
+V VE TR +++ + RD + QAI A+DD+DK +NL V+RLREWYS+HFPE+++++
Sbjct: 129 EVEVEYTRRKLRGAAQKRDMLAAQAIRAIDDIDKTVNLFVARLREWYSIHFPELNDLVRE 188
Query: 170 HPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAE 229
H YV V +GHRDN+ E+L +LG SEEK ++I EA ++++GA + E DI+ VQ A
Sbjct: 189 HEDYVKIVSAVGHRDNITVERLVDLGFSEEKARRIAEAAKQSIGADLSEIDIQAVQTLAR 248
Query: 230 EIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVL 289
LY+LR+ L +YI++ M++VAPN+ ALVG L ARLISLAGGL +LA +P+STIQVL
Sbjct: 249 ITSELYQLRRRLTEYIEQVMNEVAPNITALVGPLLGARLISLAGGLDKLARMPASTIQVL 308
Query: 290 GAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY 349
GAEKALFR LRTG KPPKHG+I+QYP I+RSP WQRGKIARALA KLAIAA+VD F+G +
Sbjct: 309 GAEKALFRALRTGGKPPKHGIIFQYPDIHRSPKWQRGKIARALAAKLAIAAKVDAFTGRF 368
Query: 350 IAEELKKELEARIREIKEKYPKPPKRKREER-RKPWKEKKKKKKKKKREKEKGKR 403
I ++L++EL RI EIK+ Y KPPKRKREE+ +P + + ++ + R + G+R
Sbjct: 369 IGDKLREELRRRIAEIKKIYAKPPKRKREEKPPQPRRARPPRRGRPPRRRRGGRR 423
>gb|AAK41215.1| Pre mRNA splicing protein [Sulfolobus solfataricus]
Length = 412
Score = 340 bits (862), Expect = 2e-92
Identities = 183/419 (43%), Positives = 271/419 (64%), Gaps = 23/419 (5%)
Query: 1 MKAFIAENVRGIYAFDENGKLIAKRYYTDKPE--KVLDKLLKGEFVKDLEVFLGELKEKG 58
MK ++ E+V G A+DENG ++ Y T+ + K+ ++LL E + LK+
Sbjct: 2 MKIYLIEHVIGAVAYDENGNIVD--YITNPRDLGKITEELLNNEKGIPFSATVELLKKVN 59
Query: 59 YDEFVFEHSELTRKAKELGYNAKTE------------FPNIAGE-RLRSNPEEFLGENWY 105
E V E+ K + LGY E P +A + + SN E++ Y
Sbjct: 60 PQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDY-----Y 114
Query: 106 EDYYKVGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDE 165
+++ +E TR +++ + RD + IQA+ A+DD+DK INL RLREWYS+HFPE+D+
Sbjct: 115 NFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDK 174
Query: 166 ILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQ 225
++ H +Y + V G R + + L+ELG +E++I +IL+A +K++GA + E D+ ++
Sbjct: 175 LIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMR 234
Query: 226 DFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSST 285
A I LY +R+ L +Y++ M +VAPN+ ALVG L ARL+S+AG L ELA +P+ST
Sbjct: 235 MIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPAST 294
Query: 286 IQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF 345
IQVLGAEKALFR LR+G +PPKHG+I+QYPAI+ SP WQRGKIARALA KLAIAARVD F
Sbjct: 295 IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAF 354
Query: 346 SGEYIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKRR 404
SG +I ++L ++L+ RI EIKEK+ +PP K+ +++KP + +K++ K KK K +GKR+
Sbjct: 355 SGRFIGDQLNEQLKKRIDEIKEKFAQPPP-KKPQQQKPQQPQKQQAKGKKGGKRRGKRK 412
>sp|Q58105|Y694_METJA HYPOTHETICAL PROTEIN MJ0694 >gi|2128446|pir||F64386 hypothetical
protein MJ0694 - Methanococcus jannaschii
>gi|1591409|gb|AAB98689.1| (U67516) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 414
Score = 315 bits (798), Expect = 7e-85
Identities = 174/377 (46%), Positives = 248/377 (65%), Gaps = 27/377 (7%)
Query: 30 KPEKVLDKLLKGEFVKDLEVFLGELKEKGYDEFVFEHSELTRKAKELGYNAKTEFPNIAG 89
+P K+ D+L K E+ +++ L L + ++ F + L + KELGY
Sbjct: 47 QPNKIADEL-KEEWGDEIK--LETLSTEPFNIGEFLRNNLFKVGKELGYF---------- 93
Query: 90 ERLRSNPEEFLGENWYEDYYKVGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLV 149
+N +EF + Y ELT+ I+ + +DK++IQ EA+ DLDK +NLL
Sbjct: 94 ----NNYDEFRKKMHYWS-----TELTKKVIKSYAQQKDKIIIQVAEAISDLDKTLNLLS 144
Query: 150 SRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKE 209
RLREWYSL+FPE+D ++ +H Y + + +G R N + +L+++ L + KI EA +
Sbjct: 145 ERLREWYSLYFPELDHLVNKHEVYANLITKLGKRKNFTKSQLKKI-LPSKLAGKIAEAAK 203
Query: 210 KTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLI 269
+MG +++ D+ V+ FAEEI+ LY+ RKEL +Y++K M++ APN+ L G L ARLI
Sbjct: 204 NSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKLMNEEAPNITKLAGVSLGARLI 263
Query: 270 SLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIA 329
LAGGL +LA +P+STIQVLGAEKALF HLR G +PPKHG+IY +P I SP WQRGKIA
Sbjct: 264 GLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKHGIIYNHPLIQGSPHWQRGKIA 323
Query: 330 RALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKK 389
RALA KLAIAAR DY G+YIA+EL ++L R+ EI+ KYPKPPK+K++E+ K K++KK
Sbjct: 324 RALACKLAIAARADYV-GDYIADELLEKLNKRVEEIRRKYPKPPKKKKKEKPKAKKKEKK 382
Query: 390 KKK---KKKREKEKGKR 403
KK KKK++K+K K+
Sbjct: 383 GKKEKSKKKKDKKKDKK 399
>pir||B69029 pre-mRNA splicing protein PRP31 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622324|gb|AAB85703.1| (AE000889) pre-mRNA splicing
protein PRP31 [Methanobacterium thermoautotrophicum]
Length = 370
Score = 271 bits (685), Expect = 1e-71
Identities = 168/392 (42%), Positives = 229/392 (57%), Gaps = 34/392 (8%)
Query: 1 MKAFIAENVRGIYAFDENGKLIAKRYYT--DKPEKVLDKLLKGEFVKDLEVFLGELKEKG 58
MK ++ + G AF E+ +LI + + P ++ + + G V E + E
Sbjct: 1 MKCYLTGCIAGPLAFSEDLELIDYEPFPVDEIPGRLAESQMGG--VSPEERIMLERLTPE 58
Query: 59 YDEFVFEHSELTRKAKELGY-NAKTEFPNIAGERLRSNPEEFLGENWY----EDYYKVGV 113
YDE V E S A G+ N + E P+ AG LR N E+ L E + + +
Sbjct: 59 YDEVVVEASPSPEYA---GFRNLRFEVPSRAGIHLRENLEDILAEILDMPAGDFIHDALM 115
Query: 114 ELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQY 173
+ R R++E D+ +IQ+I ALD+LD+ L+ RLREWYSLHFPE+D I H QY
Sbjct: 116 SVARERLRESLRETDRFIIQSINALDELDEETGKLIERLREWYSLHFPELDGI-KSHEQY 174
Query: 174 VSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDR 233
V + G RD + +K ++++G+ + D+ +++ AE I
Sbjct: 175 VELIAEYGDRDQI--------------LKNFRMDVDESLGSDITSEDLHILRGLAESIRG 220
Query: 234 LYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEK 293
L +LR+E E YID M+ +APNL+AL G+ + ARLI+ AGGLRELAMLPSSTIQVLGAEK
Sbjct: 221 LQRLREETERYIDIKMEKLAPNLRALAGSNVGARLIAHAGGLRELAMLPSSTIQVLGAEK 280
Query: 294 ALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY---I 350
ALFRHL++GAKPPKHGVI+Q+P+I SPWW RGK+AR LAGK+AIA R D FS E+ I
Sbjct: 281 ALFRHLKSGAKPPKHGVIFQHPSIRSSPWWIRGKVARLLAGKIAIAVRKDVFSREFDPGI 340
Query: 351 AEELKKELEARIREIKEKYPKPPKRKREERRK 382
E + EA IK PKPP RK+ R+K
Sbjct: 341 VESFNERFEA----IKSNNPKPPARKKGFRKK 368
>dbj|BAB00855.1| (AB024033) nucleolar protein [Arabidopsis thaliana]
Length = 499
Score = 199 bits (501), Expect = 4e-50
Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 19/308 (6%)
Query: 116 TRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVS 175
+R +++ D MVIQAI LD LDK IN R+REWYS HFPE+ +I+ + Y
Sbjct: 156 SRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYAK 215
Query: 176 FVKTIGHRDNVEEEK---LRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEID 232
K I + + EE L E E+K ++++EA + +MG + D+ VQ FA+ +
Sbjct: 216 VSKIIVDKSKLSEEHIPMLTEALGDEDKAREVIEAGKASMGQDLSPVDLINVQTFAQRVM 275
Query: 233 RLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAE 292
L RK+L DY+ M D+APNL AL+G + ARLIS AG L LA PSST+Q+LGAE
Sbjct: 276 DLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILGAE 335
Query: 293 KALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS------ 346
KALFR L+T PK+G+I+ I R+ +G+IAR LA K +IA+R+D FS
Sbjct: 336 KALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRIARFLANKCSIASRIDCFSDNSTTA 395
Query: 347 -GEYIAEELKKELE---------ARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKR 396
GE + E++++ L+ + +KE K+ E+ EKKKK+K +++
Sbjct: 396 FGEKLREQVEERLDFYDKGVAPRKNVDVMKEVLENLEKKDEGEKTVDASEKKKKRKTEEK 455
Query: 397 EKEKGKRR 404
E+EK + +
Sbjct: 456 EEEKEEEK 463
>gb|AAF02835.1|AC009894_6 (AC009894) nucleolar protein [Arabidopsis thaliana]
Length = 522
Score = 196 bits (493), Expect = 4e-49
Identities = 121/303 (39%), Positives = 177/303 (57%), Gaps = 19/303 (6%)
Query: 116 TRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVS 175
+R +++ D MVIQAI LD LDK IN R+REWYS HFPE+ +I+ + Y
Sbjct: 156 SRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYAR 215
Query: 176 FVKTIGHRDNVEEEK---LRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEID 232
K I + + E+ L E+ E+K K+++EA + +MG+ + D+ VQ FA+++
Sbjct: 216 VSKMIDDKSKLTEDHIPMLTEVLGDEDKAKEVIEAGKASMGSDLSPLDLINVQTFAQKVM 275
Query: 233 RLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAE 292
L RK+L DY+ M D+APNL AL+G + ARLIS AG L LA PSST+Q+LGAE
Sbjct: 276 DLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILGAE 335
Query: 293 KALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG---EY 349
KALFR L+T PK+G+I+ I R+ +G+IAR LA K +IA+R+D F+
Sbjct: 336 KALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRIARYLANKCSIASRIDCFADGATTA 395
Query: 350 IAEELKKELEARIREIKEKYPKPPK------------RKREERRKPWKEKKKKKKKKKRE 397
E+L++++E R+ E +K P K ++ EE ++P KK KKKK +
Sbjct: 396 FGEKLREQVEERL-EFYDKGVAPRKNVDVMKEVIENLKQEEEGKEPVDASVKKSKKKKAK 454
Query: 398 KEK 400
E+
Sbjct: 455 GEE 457
>sp|Q21276|YZVL_CAEEL HYPOTHETICAL 54.5 KD PROTEIN K07C5.4 IN CHROMOSOME V
>gi|7505425|pir||T23405 hypothetical protein K07C5.4 -
Caenorhabditis elegans >gi|3878324|emb|CAA94897.1|
(Z71181) Similarity to yeast hypothetical protein
L8167.9 (PIR accession number S48550), contains
similarity to Pfam domain: PF01798 (Putative snoRNA
binding domain), Score=329.1, E-value=1.7e-95, N=1~cDNA
EST EMBL:M89298 comes from this gene; cDNA EST>
Length = 486
Score = 194 bits (488), Expect = 2e-48
Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 13/303 (4%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D MVIQ+I LD LDK INL R+REWYS H+PE+ + P
Sbjct: 151 LGHSYSRSKVKFDVHRVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPELFRLAPDQ 210
Query: 171 PQYVSFVKTIGHR------DNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVV 224
+Y I R +N+E E L L EK +I+EA +MG + + D+ +
Sbjct: 211 YKYSRLAVAILDRNKMAENENLENEILEILDNDSEKTAQIIEAARTSMGMDISDLDLENI 270
Query: 225 QDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSS 284
+ FA + L + R++L +YI MD AP+L AL+G ++ ARLIS AG L LA P+S
Sbjct: 271 KRFAARVSSLMEYRQQLHEYIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPAS 330
Query: 285 TIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDY 344
T+Q+LGAEKALFR L+T + PK+G+++ I ++ +G+++R LA K +IAARVD
Sbjct: 331 TVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDC 390
Query: 345 FS-------GEYIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKRE 397
FS GE++ ++++ LE K ++ EE KEK KKKKK +
Sbjct: 391 FSETPVSTYGEFLRQQVEDRLEYFTSGTVPKKNIDVMKEAEEAAVEVKEKVIKKKKKAAK 450
Query: 398 KEK 400
K K
Sbjct: 451 KAK 453
>gb|AAF55992.1| (AE003738) CG13849 gene product [Drosophila melanogaster]
Length = 470
Score = 194 bits (487), Expect = 2e-48
Identities = 113/307 (36%), Positives = 183/307 (58%), Gaps = 15/307 (4%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQ+I LD LDK +N R+REWYS HFPE+ +I+P +
Sbjct: 123 LGHSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVKIVPDN 182
Query: 171 PQYVSFVKTIGHRDNVEEEKLRELG---LSEEKIKKILEAKEKTMGAWMDETDIRVVQDF 227
+ K I R N+ +++L +L + K + I++A + +MG + D+ ++ F
Sbjct: 183 YMFAKAAKFIKDRKNLTQDQLEDLEKIVMDSAKAQAIIDAAKMSMGMDISIVDLMNIELF 242
Query: 228 AEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQ 287
AE + +L + RK+L Y+ M+ VAPNL++L+G ++ ARLIS AG L LA P+ST+Q
Sbjct: 243 AERVVKLSEYRKKLSTYLHNKMNLVAPNLQSLIGDQVGARLISHAGSLTNLAKYPASTVQ 302
Query: 288 VLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG 347
+LGAEKALFR L+T + PK+G+IY I R+ +G+I+R LA K +IA+R+D F
Sbjct: 303 ILGAEKALFRALKTRSNTPKYGLIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLE 362
Query: 348 E---YIAEELKKELEARIR-----EIKEKYPKPPKRKRE----ERRKPWKEKKKKKKKKK 395
+ E LK+++E R++ ++ K + K E E + +KKKKKKK+
Sbjct: 363 QPTSVFGETLKQQVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAAITVQSEKKKKKKKR 422
Query: 396 REKEKGK 402
+++G+
Sbjct: 423 AAEDEGE 429
>emb|CAB92783.1| (X60437) nucleolar protein [Drosophila subobscura]
Length = 503
Score = 192 bits (483), Expect = 6e-48
Identities = 114/309 (36%), Positives = 178/309 (56%), Gaps = 20/309 (6%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQ+I LD LDK +N R+REWYS HFPE+ +I+P +
Sbjct: 149 LGHSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVKIVPDN 208
Query: 171 PQYVSFVKTIGHRDNVEEEKLRELG---LSEEKIKKILEAKEKTMGAWMDETDIRVVQDF 227
+ K I R N+ ++ L +L + K + I++A + +MG + D+ ++ F
Sbjct: 209 YMFAKAAKFIKDRKNLSQDLLEDLEKIVMDSAKAQAIIDAAKMSMGMDISIVDLMNIELF 268
Query: 228 AEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQ 287
AE + +L + RK+L Y+ M+ VAPNL++L+G ++ ARLIS AG L LA P+ST+Q
Sbjct: 269 AERVVKLSEYRKKLSTYLHNKMNLVAPNLQSLIGDQVGARLISHAGSLTNLAKYPASTVQ 328
Query: 288 VLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG 347
+LGAEKALFR L+T + PK+G+IY I R+ +G+I+R LA K +IA+R+D F
Sbjct: 329 ILGAEKALFRALKTRSNTPKYGLIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLD 388
Query: 348 E---YIAEELKKELEARIR-----EIKEKYPKPPKRKREERRK---------PWKEKKKK 390
+ E LK+++E R++ ++ K + K E + P EKKK
Sbjct: 389 QPTSVFGESLKQQVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAGANGTAAPQSEKKKN 448
Query: 391 KKKKKREKE 399
KKKK+ E
Sbjct: 449 KKKKRAAGE 457
>pir||T40586 nucleolar protein involved in pre-rRNA processing - fission yeast
(Schizosaccharomyces pombe) >gi|4160346|emb|CAA22814.1|
(AL035216) probable involvement in pre rRNA processing;
putative sik1 protein homolog [Schizosaccharomyces
pombe]
Length = 497
Score = 192 bits (483), Expect = 6e-48
Identities = 115/329 (34%), Positives = 178/329 (53%), Gaps = 36/329 (10%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQAI LD LDK IN R++EWYS HFPE+ +I+ +
Sbjct: 150 LGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHFPELSKIVGDN 209
Query: 171 PQYVSFVKTIGHRDNVEEEKLRELGL----SEEKIKKILEAKEKTMGAWMDETDIRVVQD 226
+Y V +G + + +E L +L ++ + I+ A + +MG + E D+ +
Sbjct: 210 YKYAVIVTLVGDKTTINDEMLHDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLENILS 269
Query: 227 FAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTI 286
FAE + +L RK+L +Y+ + M+ VAPNL L+G + ARLIS AG L L+ P+ST+
Sbjct: 270 FAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTV 329
Query: 287 QVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS 346
Q+LGAEKALFR L+T PK+G+IY I ++ +G+I+R LA K +IA+R+D FS
Sbjct: 330 QILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFS 389
Query: 347 G---EYIAEELKKELEARIR-------------EIKEKYPKP----------------PK 374
+ L++++E R+ + E Y K +
Sbjct: 390 DAPTTAFGQVLRRQVEERLNFFDTGVAPTRNSIAMAEAYEKALSSVNIDGDEEVDIDVEE 449
Query: 375 RKREERRKPWKEKKKKKKKKKREKEKGKR 403
KP K++KK KK+KK+EK K KR
Sbjct: 450 TVETISEKPSKKEKKDKKEKKKEKSKKKR 478
>emb|CAC01444.1| (AL049712) dJ686C3.2 (nucleolar protein hNop56) [Homo sapiens]
Length = 593
Score = 189 bits (476), Expect = 4e-47
Identities = 112/305 (36%), Positives = 171/305 (55%), Gaps = 19/305 (6%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQ+I LD LDK IN R+REWY HFPE+ +I+ +
Sbjct: 147 LGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDN 206
Query: 171 PQYVSFVKTIGHRDNVEE---EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDF 227
Y + IG+R + E EKL EL + K K IL+A +MG + D+ ++ F
Sbjct: 207 ATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESF 266
Query: 228 AEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQ 287
+ + L + R+ L Y+ M VAP+L AL+G + ARLI+ AG L LA P+ST+Q
Sbjct: 267 SSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQ 326
Query: 288 VLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS- 346
+LGAEKALFR L+T PK+G+I+ I R+ +G+I+R LA K +IA+R+D FS
Sbjct: 327 ILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSE 386
Query: 347 ------GEYIAEELKKEL---------EARIREIKEKYPKPPKRKREERRKPWKEKKKKK 391
GE + E++++ L + +KE + + E RK K++KK+
Sbjct: 387 VPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEITRKLEKQEKKRL 446
Query: 392 KKKKR 396
KK+K+
Sbjct: 447 KKEKK 451
>gi|11421205 nucleolar protein (KKE/D repeat) [Homo sapiens]
Length = 597
Score = 188 bits (473), Expect = 9e-47
Identities = 115/313 (36%), Positives = 173/313 (54%), Gaps = 32/313 (10%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQ+I LD LDK IN R+REWY HFPE+ +I+ +
Sbjct: 149 LGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDN 208
Query: 171 PQYVSFVKTIGHRDNVEE---EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDF 227
Y + IG+R + E EKL EL + K K IL+A +MG + D+ ++ F
Sbjct: 209 ATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESF 268
Query: 228 AEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQ 287
+ + L + R+ L Y+ M VAP+L AL+G + ARLI+ AG L LA P+ST+Q
Sbjct: 269 SSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQ 328
Query: 288 VLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS- 346
+LGAEKALFR L+T PK+G+I+ I R+ +G+I+R LA K +IA+R+D FS
Sbjct: 329 ILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSE 388
Query: 347 ------GEYIAEELKKEL-----------------EARIREIKEKYPKPPKRKREERRKP 383
GE + E++++ L EA +++ E+ RK E+
Sbjct: 389 VPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQDQAEEAAAEITRKLEK---- 444
Query: 384 WKEKKKKKKKKKR 396
+EKK+ KK+KKR
Sbjct: 445 -QEKKRLKKEKKR 456
>gi|5453794 nucleolar protein (KKE/D repeat) [Homo sapiens]
>gi|2811001|sp|O00567|NO56_HUMAN NUCLEOLAR PROTEIN NOP56
>gi|2230878|emb|CAA72789.1| (Y12065) hNop56 [Homo
sapiens]
Length = 602
Score = 188 bits (472), Expect = 1e-46
Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 16/306 (5%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D M+IQ+I LD LDK IN R+REWY HFPE+ +I+ +
Sbjct: 154 LGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDN 213
Query: 171 PQYVSFVKTIGHRDNVEE---EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDF 227
Y + IG+R + E EKL EL + K K IL+A +MG + D+ ++ F
Sbjct: 214 ATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESF 273
Query: 228 AEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQ 287
+ + L + R+ L Y+ M VAP+L AL+G + ARLI+ AG L LA P+ST+Q
Sbjct: 274 SSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQ 333
Query: 288 VLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS- 346
+LGAEKALFR L+T PK+G+I+ I R+ +G+I+R LA K +IA+R+D FS
Sbjct: 334 ILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSE 393
Query: 347 --GEYIAEELKKELEARIR-----EIKEKYPKPPKR-----KREERRKPWKEKKKKKKKK 394
E+L++++E R+ EI K K + EE K +K++KK
Sbjct: 394 VPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEAEEAAAEITRKLEKQEKK 453
Query: 395 KREKEK 400
+ +KEK
Sbjct: 454 RLKKEK 459
>emb|CAB60723.1| (AJ249465) DNop5 protein [Drosophila melanogaster]
Length = 510
Score = 184 bits (463), Expect = 1e-45
Identities = 123/337 (36%), Positives = 179/337 (52%), Gaps = 54/337 (16%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ D M++QA LDDLDK +N + R REWY HFPE+ +I+ + +V
Sbjct: 147 LSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIITDNIAFV 206
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
+K +G RDN+ L ++ L E+ +K+ EA E +MG + E D+ +Q +EI +
Sbjct: 207 KTIKLVGTRDNMATSDLSDI-LPEDVEEKVKEAAEISMGTEISEEDVLNIQCLCDEIISI 265
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
R L DY+ M +APNL LVG + ARLI+ AG L LA PSST+Q+LGAEKA
Sbjct: 266 NDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLIAHAGSLINLAKHPSSTVQILGAEKA 325
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEEL 354
LFR L+T PK+G+IY + ++ +GK++R+LA K ++A RVD F GE EL
Sbjct: 326 LFRALKTKKDTPKYGLIYHAQLVGQASQKNKGKMSRSLAAKASLATRVDAF-GEEATFEL 384
Query: 355 ----KKELEARIREIK-----------------EKYP------------------KPPKR 375
K +LE+R+R ++ EKY K K
Sbjct: 385 GAAHKVKLESRLRLLEEGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKRKH 444
Query: 376 KREERRKPWK-------------EKKKKKKKKKREKE 399
E++ P K EKKKKKKKK++++E
Sbjct: 445 SESEQQTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEE 481
>gb|AAF52455.2| (AE003615) nop5 gene product [Drosophila melanogaster]
Length = 511
Score = 184 bits (462), Expect = 2e-45
Identities = 123/338 (36%), Positives = 179/338 (52%), Gaps = 55/338 (16%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ D M++QA LDDLDK +N + R REWY HFPE+ +I+ + +V
Sbjct: 147 LSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIITDNIAFV 206
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
+K +G RDN+ L ++ L E+ +K+ EA E +MG + E D+ +Q +EI +
Sbjct: 207 KTIKLVGTRDNMATSDLSDI-LPEDVEEKVKEAAEISMGTEISEEDVLNIQCLCDEIISI 265
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
R L DY+ M +APNL LVG + ARLI+ AG L LA PSST+Q+LGAEKA
Sbjct: 266 NDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLIAHAGSLINLAKHPSSTVQILGAEKA 325
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEEL 354
LFR L+T PK+G+IY + ++ +GK++R+LA K ++A RVD F GE EL
Sbjct: 326 LFRALKTKKDTPKYGLIYHAQLVGQASQKNKGKMSRSLAAKASLATRVDAF-GEEATFEL 384
Query: 355 ----KKELEARIREIK-----------------EKY-------------------PKPPK 374
K +LE+R+R ++ EKY K K
Sbjct: 385 GAAHKVKLESRLRLLEEGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKKRK 444
Query: 375 RKREERRKPWK-------------EKKKKKKKKKREKE 399
E++ P K EKKKKKKKK++++E
Sbjct: 445 HSESEQQTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEE 482
>gi|6324886 57 kDa nucleolar protein; Nop58p [Saccharomyces cerevisiae]
>gi|2833225|sp|Q12499|NOP5_YEAST NUCLEOLAR PROTEIN NOP5
>gi|2132127|pir||S58322 nucleolar protein NOP5 - yeast
(Saccharomyces cerevisiae) >gi|940841|emb|CAA62165.1|
(X90565) orf 06108 [Saccharomyces cerevisiae]
>gi|1420682|emb|CAA99630.1| (Z75217) ORF YOR310c
[Saccharomyces cerevisiae] >gi|3170533|gb|AAC39484.1|
(AF056070) nucleolar protein Nop5p [Saccharomyces
cerevisiae]
Length = 511
Score = 183 bits (461), Expect = 2e-45
Identities = 133/432 (30%), Positives = 205/432 (46%), Gaps = 65/432 (15%)
Query: 36 DKLLKGEFVKDLEVFLGELKEKGYDEFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSN 95
+ +++G+ LE L E+K+ + ++L +LG N + + R+
Sbjct: 61 NSIIEGKVSSQLEKLLEEIKKDKKSTLIVSETKLANAINKLGLNFNVVSDAVTLDIYRAI 120
Query: 96 PE---EFLGENWYEDYYKVGVELT----RLRIQEQSGARDKMVIQAIEALDDLDKVINLL 148
E E L D K+ + L R +++ + D M+IQAI LDDLDK +N
Sbjct: 121 KEYLPELLPGMSDNDLSKMSLGLAHSIGRHKLKFSADKVDVMIIQAIALLDDLDKELNTY 180
Query: 149 VSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAK 208
R +EWY HFPE+ +I+ Y + T+G R E L E+ L EE +++ A
Sbjct: 181 AMRCKEWYGWHFPELAKIVTDSVAYARIILTMGIRSKASETDLSEI-LPEEIEERVKTAA 239
Query: 209 EKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARL 268
E +MG + +TD+ + AE+I R++L +Y+ M +APNL LVG + ARL
Sbjct: 240 EVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARL 299
Query: 269 ISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKI 328
I+ +G L LA P+STIQ+LGAEKALFR L+T PK+G++Y + ++ +GKI
Sbjct: 300 IAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKI 359
Query: 329 ARALAGKLAIAARVDYF------SGEYIAEELKKELEARIREI----------------- 365
AR LA K A++ R D SG+ I E + ++E R+ ++
Sbjct: 360 ARVLAAKAAVSLRYDALAEDRDDSGD-IGLESRAKVENRLSQLEGRDLRTTPKVVREAKK 418
Query: 366 ---------------------------------KEKYPKPPKRKREERRKPWKEKKKKKK 392
KEK K KR +E K K+ KK+KK
Sbjct: 419 VEMTEARAYNADADTAKAASDSESDSDDEEEEKKEKKEKKRKRDDDEDSKDSKKAKKEKK 478
Query: 393 KKKREKEKGKRR 404
KK +KEK +++
Sbjct: 479 DKKEKKEKKEKK 490
>pir||T32941 hypothetical protein W01B11.3 - Caenorhabditis elegans
>gi|2804491|gb|AAB97597.1| (AF043704) contains
similarity to S. cerevisiae Prp31p (GB:U31970)
[Caenorhabditis elegans]
Length = 487
Score = 183 bits (460), Expect = 3e-45
Identities = 110/290 (37%), Positives = 159/290 (53%), Gaps = 6/290 (2%)
Query: 92 LRSNPEEFLGENWYEDY---YKVGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLL 148
+R++ E+ L E+ E V L R +++ D M++QA+ LDDLDK +N
Sbjct: 118 VRAHIEDLLAEHKEEMNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNY 177
Query: 149 VSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAK 208
V R+REWY HFPE+ + + H Y +K IG R N L + L EE +K+ E
Sbjct: 178 VMRVREWYGWHFPELGKTIQDHQAYAKIIKAIGMRQNCINTDLSSI-LPEELEEKVKEDA 236
Query: 209 EKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARL 268
E +MG + + D+ ++ +++ L R +L DY+ M +APNL L+G + ARL
Sbjct: 237 EISMGTDISDIDLIHIKGLCDQVIELSAYRAQLFDYLKNRMTALAPNLTVLLGELVGARL 296
Query: 269 ISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKI 328
IS AG L LA P+STIQ+LGAEKALFR L+T PK+G+IY I ++P +GK+
Sbjct: 297 ISHAGSLVSLAKAPASTIQILGAEKALFRALKTKKDTPKYGLIYHAQLITQAPPKVKGKM 356
Query: 329 ARALAGKLAIAARVDYFSGEYIAEELKKELEARIREI--KEKYPKPPKRK 376
AR LA K ++A R+D S E E+ E A + + E P K K
Sbjct: 357 ARKLAAKCSLATRIDALSDESATNEIGIECRAALENVLRTESERGPSKNK 406
>emb|CAA10127.1| (AJ012686) nucleolar protein [Cicer arietinum]
Length = 454
Score = 182 bits (458), Expect = 5e-45
Identities = 114/300 (38%), Positives = 168/300 (56%), Gaps = 18/300 (6%)
Query: 116 TRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVS 175
+R +++ D MVIQAI LD LDK IN R+REWYS HFPE+ +I+ + Y
Sbjct: 85 SRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYCK 144
Query: 176 FVKTIGHRDNVEEEKLRELGLS---EEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEID 232
K I + + E+KL L E+K K+I+EA + +MG + D+ V FA+ +
Sbjct: 145 VAKFIEDKSKLSEDKLEGLTDQVGDEDKAKEIIEAAKASMGQDLSPVDLINVHMFAQRVM 204
Query: 233 RLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAE 292
L R+ L DY+ M+D+APNL +L+G + ARLIS AG L LA PSST+Q+L AE
Sbjct: 205 DLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILCAE 264
Query: 293 KALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS---GEY 349
KALFR +T PK+G+I+ I R+ +G++AR LA K +IA+R+D FS
Sbjct: 265 KALFRAFKTRRNTPKYGLIFHSSFIGRASAKNKGRMARYLANKCSIASRIDCFSENGSTI 324
Query: 350 IAEELKKELEARIREIKEKYPKPPKR-----------KREERRKPWKEKKKKKKKKKREK 398
E+L++++E R+ + +K P K ++ +E KK KKK++K
Sbjct: 325 FGEKLREQVEERL-DFYDKGVAPRKNIDVMKSAIEIADNKDTEMETEEASAKKSKKKKQK 383
>gi|6323226 homology to microtubule binding proteins and to X90565_5.cds; Sik1p
[Saccharomyces cerevisiae]
>gi|2833223|sp|Q12460|SIK1_YEAST SIK1 PROTEIN
>gi|626457|pir||S48550 hypothetical protein YLR197w -
yeast (Saccharomyces cerevisiae)
>gi|544506|gb|AAB67431.1| (U14913) Sik1p [Saccharomyces
cerevisiae] >gi|984964|gb|AAC49066.1| (U20237) Sik1p
[Saccharomyces cerevisiae]
Length = 504
Score = 182 bits (457), Expect = 6e-45
Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 41/334 (12%)
Query: 111 VGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRH 170
+G +R +++ D +IQAI LD LDK IN R++EWY HFPE+ +++P +
Sbjct: 154 LGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWHFPELAKLVPDN 213
Query: 171 PQYVSFVKTIGHRDNVEEEKLRELG--LSEEK--IKKILEAKEKTMGAWMDETDIRVVQD 226
+ V I + ++ ++ L +L L+E+ +++++ +MG + ETD+ V
Sbjct: 214 YTFAKLVLFIKDKASLNDDSLHDLAALLNEDSGIAQRVIDNARISMGQDISETDMENVCV 273
Query: 227 FAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTI 286
FA+ + L R++L DY+ + M VAPNL L+G + ARLIS AG L L+ +ST+
Sbjct: 274 FAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTV 333
Query: 287 QVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS 346
Q+LGAEKALFR L+T PK+G+IY I+++ +G+I+R LA K ++A+R+D +S
Sbjct: 334 QILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYS 393
Query: 347 GE---YIAEELKKELEARIR-----------------------------EIKEKYPKPPK 374
E LKK++E R+ E++E K
Sbjct: 394 EEPSNVFGSVLKKQVEQRLEFYNTGKPTLKNELAIQEAMELYNKDKPAAEVEETKEKESS 453
Query: 375 RKR-----EERRKPWKEKKKKKKKKKREKEKGKR 403
+KR +E +K KEKK KK+KK+++++K K+
Sbjct: 454 KKRKLEDDDEEKKEKKEKKSKKEKKEKKEKKDKK 487
>pir||T45146 probable RNA processing protein [imported] - Methanosarcina mazei
>gi|2808688|emb|CAA76147.1| (Y16266) orf169
[Methanosarcina mazei]
Length = 168
Score = 182 bits (456), Expect = 9e-45
Identities = 86/161 (53%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 229 EEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQV 288
+ + LY+ RK++E YI+ +M+ +APNL L G L ARLIS+AG L +LA PSSTIQV
Sbjct: 9 QRVCSLYERRKQIEAYIESSMEILAPNLALLAGPMLGARLISIAGSLEKLAAFPSSTIQV 68
Query: 289 LGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGE 348
+GA KALF+HLR+ A PKHG+IY +P IN SPWW RGK+ARALA KL++AAR+D++S +
Sbjct: 69 IGASKALFKHLRSRAPSPKHGIIYSHPLINTSPWWVRGKVARALAAKLSLAARIDFYSAK 128
Query: 349 YIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKK 389
L+ ELE +IR+I+ + P+PP++++E R KP K+++K
Sbjct: 129 R-NPSLENELEEKIRKIRAENPRPPQKRQEIRAKPKKKRRK 168
>dbj|BAA31260.1| (AB015431) SAR DNA binding protein [Oryza sativa]
Length = 485
Score = 181 bits (454), Expect = 1e-44
Identities = 111/283 (39%), Positives = 163/283 (57%), Gaps = 5/283 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ D M+IQAI LDDLDK +N R+REWY HFPE+ +I+ + QY
Sbjct: 144 LSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYA 203
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
VK +G R N E E+ +E ++ EA +MG + E D+ +++ +++ L
Sbjct: 204 KVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLAL 263
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L DY+ M+ +APNL ALVG + ARLI+ G L LA P STIQ+LGAEKA
Sbjct: 264 SEYRAQLFDYLRSRMNTIAPNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKA 323
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF-SGE--YIA 351
LFR L+T PK+G+IY I ++ +GKI+R+LA K A+A R D GE I
Sbjct: 324 LFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIG 383
Query: 352 EELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKK 394
E + +LE R+R ++ K + + + KP E +K +KK
Sbjct: 384 LESRVKLETRLRVLEGK--ELGRSAGSTKGKPKIEVYEKDRKK 424
>pir||T06377 SAR DNA-binding protein-1 - garden pea >gi|3132696|gb|AAC16330.1|
(AF061962) SAR DNA-binding protein-1 [Pisum sativum]
Length = 560
Score = 180 bits (451), Expect = 3e-44
Identities = 115/337 (34%), Positives = 177/337 (52%), Gaps = 48/337 (14%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ + D M++QAI LDDLDK +N R+REWY HFPE+ +I+ + QY
Sbjct: 144 LSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYA 203
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
VK +G R N + E+ L+EE ++ EA +MG + E D+ +++ +++ L
Sbjct: 204 RSVKLMGDRINAAKLDFSEI-LTEEVEAEVKEAAVISMGTEIGELDLSNIRELCDQVLSL 262
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L DY+ M+ +APNL A+VG + ARLI+ G L LA P ST+Q+LGAEKA
Sbjct: 263 SEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLINLAKQPGSTVQILGAEKA 322
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L+T PK+G+IY I ++ +GKI+R+LA K A+A R D +
Sbjct: 323 LFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDGQDNTMG 382
Query: 352 EELKKELEARIREIK-----------------EKYPKPPKR------------------- 375
E + +LEAR+R ++ E Y K K+
Sbjct: 383 LENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDKKKGAGGLITPAKTYNTAADSV 442
Query: 376 --------KREERRKPWKEKKKKKKKKKREKEKGKRR 404
E+ +P +KKK+KK+K+EK+ K +
Sbjct: 443 IHQKSNSAMDEDTPEPTTAEKKKEKKEKKEKKDKKEK 479
>pir||T06379 SAR DNA-binding protein 2 - garden pea >gi|3132698|gb|AAC16331.1|
(AF061963) SAR DNA-binding protein-2 [Pisum sativum]
Length = 550
Score = 176 bits (443), Expect = 3e-43
Identities = 117/337 (34%), Positives = 175/337 (51%), Gaps = 50/337 (14%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ + D M++QAI LDDLDK +N R+REWY HFPE+ +I+ + QY
Sbjct: 144 LSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIILDNIQYA 203
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
VK +G R N + E+ LSEE ++ EA +MG + D+ +++ +++ L
Sbjct: 204 KAVKLMGDRINAAKLDFSEI-LSEEVEAEVKEASVISMGTEIVTLDLENIRELCDQVLSL 262
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L DY+ M+ +APNL A+VG + ARLI+ G L LA P ST+Q+LGAEKA
Sbjct: 263 SEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKA 322
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L+T PK+G+IY I ++ +GKI+R+LA K A+A R D +
Sbjct: 323 LFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDGQDNTMG 382
Query: 352 EELKKELEARIREIK-----------------EKYPKPPKRKREERRKPWK--------- 385
E + +LEAR+R ++ E Y K K+ P K
Sbjct: 383 LENRAKLEARLRGLEGKELGHFAGSAKGKPKIEAYDKDKKKGSGGLITPAKTYNTAADSV 442
Query: 386 --------------------EKKKKKKKKKREKEKGK 402
+KK+KK+KKKREK++ K
Sbjct: 443 IEPKSNSAMDEDTPETPVTGKKKEKKEKKKREKKEEK 479
>gb|AAF27012.1|AC009177_2 (AC009177) putative SAR DNA-binding protein-1 [Arabidopsis
thaliana]
Length = 533
Score = 173 bits (434), Expect = 3e-42
Identities = 112/327 (34%), Positives = 171/327 (52%), Gaps = 42/327 (12%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L R +++ S D M+IQAI LDDLDK +N R+REWY HFPE+ +I+ + Y
Sbjct: 145 LARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDNILYA 204
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
VK +G+R N + E+ L++E + +A +MG + + D+ +++ +++ L
Sbjct: 205 KSVKLMGNRVNAAKLDFSEI-LADEIEADLKDAAVISMGTEVSDLDLLHIRELCDQVLSL 263
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L DY+ M+ +APNL ALVG + ARLIS G L L+ P ST+Q+LGAEKA
Sbjct: 264 SEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEKA 323
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY---IA 351
LFR L+T PK+G+I+ + ++ +GKI+R+LA K +A RVD +
Sbjct: 324 LFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMG 383
Query: 352 EELKKELEARIREIK-----------------EKYPKPPKR------------------- 375
E + +LEAR+R ++ E Y K K
Sbjct: 384 LENRAKLEARLRNLEGKDLGRLSGSSKGKPKIEVYNKDKKMGSGGLITPAKTYNTAADSL 443
Query: 376 --KREERRKPWKEKKKKKKKKKREKEK 400
+ + + +KK KKKKKK E+EK
Sbjct: 444 LGETSAKSEEPSKKKDKKKKKKVEEEK 470
>sp|O04658|Y412_ARATH HYPOTHETICAL 47.9 KD PROTEIN M021B04.12 >gi|7451354|pir||T01807
hypothetical protein A_TM021B04.12 - Arabidopsis
thaliana >gi|2191188|gb|AAB61073.1| (AF007271) similar
to S. cerevisiae SIK1P (PID:g984964) [Arabidopsis
thaliana]
Length = 439
Score = 173 bits (433), Expect = 4e-42
Identities = 105/283 (37%), Positives = 161/283 (56%), Gaps = 6/283 (2%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L R +++ S D M+IQAI LDDLDK +N R+REW+ HFPE+ +I+ + Y
Sbjct: 144 LARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYA 203
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
VK +G+R N + E+ L++E ++ EA +MG + + D+ +++ +++ L
Sbjct: 204 KAVKLMGNRINAAKLDFSEI-LADEIEAELKEAAVISMGTEVSDLDLLHIRELCDQVLSL 262
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L DY+ M+ +APNL ALVG + ARLIS G L LA P ST+Q+LGAEKA
Sbjct: 263 AEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKA 322
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEY---IA 351
LFR L+T PK+G+I+ + ++ +GKI+R+LA K +A R D +
Sbjct: 323 LFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMG 382
Query: 352 EELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKK 394
E + +LEAR+R ++ K + + KP E K KKK
Sbjct: 383 VENRLKLEARLRTLEGK--DLGRLSGSAKGKPKIEVYDKDKKK 423
>gi|7706254 nucleolar protein NOP5/NOP58 [Homo sapiens]
>gi|4680298|gb|AAD27610.1|AF123534_1 (AF123534)
nucleolar protein NOP5/NOP58 [Homo sapiens]
>gi|9652082|gb|AAF91394.1|AF263608_1 (AF263608)
nucleolar protein 5 [Homo sapiens]
Length = 529
Score = 171 bits (430), Expect = 1e-41
Identities = 97/257 (37%), Positives = 150/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 146 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 205
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N KL EL L EE ++ A E +MG + E DI + ++ +
Sbjct: 206 KCLQKVGDRKNYASAKLSEL-LPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 264
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 265 SEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 324
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + ++ +GKI+R LA K +A R D F S +
Sbjct: 325 LFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 384
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR+R ++++
Sbjct: 385 VENRAKLEARLRTLEDR 401
>pir||T17299 hypothetical protein DKFZp564H2171.1 - human (fragment)
>gi|5912090|emb|CAB55989.1| (AL117554) hypothetical
protein [Homo sapiens]
Length = 447
Score = 171 bits (430), Expect = 1e-41
Identities = 97/257 (37%), Positives = 150/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 146 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 205
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N KL EL L EE ++ A E +MG + E DI + ++ +
Sbjct: 206 KCLQKVGDRKNYASAKLSEL-LPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 264
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 265 SEYRTQLYEYLQNRMVAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 324
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + ++ +GKI+R LA K +A R D F S +
Sbjct: 325 LFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 384
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR+R ++++
Sbjct: 385 VENRAKLEARLRTLEDR 401
>gi|11429894 nucleolar protein NOP5/NOP58 [Homo sapiens]
Length = 583
Score = 171 bits (430), Expect = 1e-41
Identities = 97/257 (37%), Positives = 150/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 200 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 259
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N KL EL L EE ++ A E +MG + E DI + ++ +
Sbjct: 260 KCLQKVGDRKNYASAKLSEL-LPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 318
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 319 SEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 378
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + ++ +GKI+R LA K +A R D F S +
Sbjct: 379 LFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 438
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR+R ++++
Sbjct: 439 VENRAKLEARLRTLEDR 455
>gi|9256555 SIK similar protein [Mus musculus] >gi|2996194|gb|AAC08435.1|
(AF053232) SIK similar protein [Mus musculus]
Length = 473
Score = 170 bits (426), Expect = 3e-41
Identities = 97/257 (37%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 83 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 142
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N L E LSEE ++ A E +MG + E DI + ++ +
Sbjct: 143 KCLQKVGDRKNYASASLSEF-LSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 201
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 202 SEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 261
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + +S +GKI+R LA K +A R D F S +
Sbjct: 262 LFRALKSRRDTPKYGLIYHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 321
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR+R ++++
Sbjct: 322 IENRAKLEARLRILEDR 338
>pir||T50180 nucleolar protein NOP5-like protein [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|6912023|emb|CAB72231.1|
(AL138854) similar to yeast nucleolar protein Nop5p
involved in the synthesis of the 40S ribosomal subunit;
snoRNA binding [Schizosaccharomyces pombe]
Length = 508
Score = 170 bits (426), Expect = 3e-41
Identities = 100/257 (38%), Positives = 147/257 (56%), Gaps = 6/257 (2%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R +++ D M++QAI LDDLDK +N R+REWY HFPE+ +I+ + Y
Sbjct: 147 LSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLAYA 206
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
+K +G R E ++ L EE + A E +MG + E D+ + A+++ L
Sbjct: 207 RVIKAMGMRTKCSETDFSDI-LPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLEL 265
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
R +L +Y+ M +APNL ALVG + ARLI+ AG L LA P+STIQ+LGAEKA
Sbjct: 266 ASYRAQLSEYLRNRMQAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKA 325
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGE-----Y 349
LFR L+T PK+G+IY + ++ +GKIAR LA K A++ RVD S +
Sbjct: 326 LFRALKTKHSTPKYGLIYHASLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGN 385
Query: 350 IAEELKKELEARIREIK 366
I E + +E R+R ++
Sbjct: 386 IGLENRIRVENRLRSLE 402
>gi|11120704 Nopp140 associated protein [Rattus norvegicus]
>gi|6180063|gb|AAF05769.1|AF194371_1 (AF194371) Nopp140
associated protein [Rattus norvegicus]
Length = 534
Score = 169 bits (424), Expect = 5e-41
Identities = 96/257 (37%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 146 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 205
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N L E LSEE ++ A E +MG + E DI + ++ +
Sbjct: 206 KCLQKVGDRKNYASATLSEF-LSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 264
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 265 SEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 324
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + ++ +GKI+R LA K +A R D F S +
Sbjct: 325 LFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 384
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR+R ++++
Sbjct: 385 AENRAKLEARLRILEDR 401
>gb|AAC23535.1| (AF069782) unknown [Rattus sp.]
Length = 461
Score = 168 bits (421), Expect = 1e-40
Identities = 95/257 (36%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+ + Y
Sbjct: 146 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYC 205
Query: 175 SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRL 234
++ +G R N L E LSEE ++ A E +MG + E DI + ++ +
Sbjct: 206 KCLQKVGDRKNYASATLSEF-LSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEI 264
Query: 235 YKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKA 294
+ R +L +Y+ M +APN+ +VG + ARLI+ AG L LA +ST+Q+LGAEKA
Sbjct: 265 SEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKA 324
Query: 295 LFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF---SGEYIA 351
LFR L++ PK+G+IY + ++ +GKI+R LA K +A R D F S +
Sbjct: 325 LFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMG 384
Query: 352 EELKKELEARIREIKEK 368
E + +LEAR++ ++++
Sbjct: 385 AENRAKLEARLKILEDR 401
>sp|O04656|Y413_ARATH HYPOTHETICAL 48.8 KD PROTEIN M021B04.13 >gi|7451355|pir||T01805
hypothetical protein A_TM021B04.13 - Arabidopsis
thaliana >gi|2191189|gb|AAB61074.1| (AF007271) similar
to S. cerevisiae SIK1P (PID:g984964) [Arabidopsis
thaliana]
Length = 435
Score = 161 bits (403), Expect = 1e-38
Identities = 101/284 (35%), Positives = 158/284 (55%), Gaps = 15/284 (5%)
Query: 130 MVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEE 189
M+I +I LDDLDK +N + + E Y LHFPE+ I+ + Y VK +G+R N
Sbjct: 116 MIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAKVVKLMGNRINAATL 175
Query: 190 KLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAM 249
E+ L++E ++ EA + + + D+ +Q+ +++ + + + L D + M
Sbjct: 176 DFSEI-LADEVEAELKEASMVSTRTEVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKM 234
Query: 250 DDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHG 309
+ +APNL ALVG + ARLIS G L L+ LP STIQ+LGAEK L++ L+T PK+G
Sbjct: 235 NKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYG 294
Query: 310 VIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG---EYIAEELKKELEARIR--- 363
+IY P + ++ +GKIAR+LA K A+A R D F + E + +LEAR+R
Sbjct: 295 LIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARLRNLE 354
Query: 364 --------EIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKE 399
E +E K K++ ++ +P E+ KK+KK+ E E
Sbjct: 355 GGDLGACEEEEEVNDKDTKKEADDEEEPKTEECSKKRKKEAELE 398
>gb|AAG19551.1| (AE005045) archaeal nucleolar protein homolog; Nop56/58
[Halobacterium sp. NRC-1]
Length = 277
Score = 139 bits (348), Expect = 4e-32
Identities = 92/253 (36%), Positives = 129/253 (50%), Gaps = 39/253 (15%)
Query: 116 TRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVS 175
TR ++E+ A D+ ++ A+ + DL N + R EW F +D+ ++
Sbjct: 61 TRAAVRERERADDQQLVHAVRTIGDLSDAANEVAERAVEWARTLFDGVDD-------GIA 113
Query: 176 FVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLY 235
+ + R + R + L E D A+E DR
Sbjct: 114 GARDVAGRSANSPTEERAIALCER------------------------ATDLADERDRA- 148
Query: 236 KLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKAL 295
+ +++ VAPNL L G LAARLI+LAGGL +LA LPS T+QVLGAE AL
Sbjct: 149 ------QGFVETHAPTVAPNLSMLAGPVLAARLIALAGGLDDLAKLPSGTVQVLGAEDAL 202
Query: 296 FRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELK 355
F HLR A PKHGVIY + + + QRG ARALAGKL IAARVD++SG+ +L+
Sbjct: 203 FAHLRGHAPSPKHGVIYTHEYVRGTHPDQRGSAARALAGKLTIAARVDHYSGDR-RPDLE 261
Query: 356 KELEARIREIKEK 368
EL+AR+ I+ +
Sbjct: 262 AELDARMERIRAR 274
>gb|AAF29084.1|AF161469_1 (AF161469) HSPC120 [Homo sapiens]
Length = 465
Score = 134 bits (334), Expect = 2e-30
Identities = 88/270 (32%), Positives = 143/270 (52%), Gaps = 31/270 (11%)
Query: 115 LTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYV 174
L+R R++ + D M++QAI LDDLDK +N + R REWY HFPE+ +I+
Sbjct: 83 LSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIIS------ 136
Query: 175 SFVKTIGHRDNVEEEKL-RELGLSEEKIKKILEAKEKTMGAWMDET--DIRVVQDFAEE- 230
DN + R+L + + ++ E + + A ++ + DI + F
Sbjct: 137 ---------DNYHTASVYRKLAIGRLCLCQLSELLPEEVEAEVEGSCRDIHGNRGFRRRY 187
Query: 231 ---------IDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAML 281
+ + + R +L +Y+ M +APN+ +VG + ARLI+ AG L LA
Sbjct: 188 LQYSASLHPVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKH 247
Query: 282 PSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAAR 341
+ST+Q+LGAEKALFR L++ PK+G+IY + ++ +GKI+R LA K +A R
Sbjct: 248 AASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIR 307
Query: 342 VDYF---SGEYIAEELKKELEARIREIKEK 368
D F S + E + +LEAR+R ++++
Sbjct: 308 YDAFGEDSSSAMGVENRAKLEARLRTLEDR 337
>gi|11499670 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483204|pir||G69510 conserved hypothetical protein
AF2088 - Archaeoglobus fulgidus
>gi|2648446|gb|AAB89168.1| (AE000960) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 261
Score = 131 bits (326), Expect = 1e-29
Identities = 82/212 (38%), Positives = 125/212 (58%), Gaps = 25/212 (11%)
Query: 163 IDEILPRHPQYV-SFVKTIGHRDNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDI 221
+++ L R +YV + VK + EE + + EK++ I KE
Sbjct: 69 VEKELRREDRYVVALVKAL-------EEIDESINMLNEKLEDIRAVKES----------- 110
Query: 222 RVVQDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAML 281
+ + F ++I L +LR+++E I++ M+ +APN+ LVGAK+AA+L+ AG + L L
Sbjct: 111 EITEKFEKKIRELRELRRDVEREIEEVMEKIAPNMTELVGAKVAAKLLERAGSMERLVRL 170
Query: 282 PSSTIQVLGAEKAL---FRHLRTG--AKPPKHGVIYQYPAINRSPWWQRGKIARALAGKL 336
P+S IQV+GAEK+L F ++ G AK PKHG+I+ +P I P +RGK+AR LA KL
Sbjct: 171 PASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFLAAKL 230
Query: 337 AIAARVDYFSGEYIAEELKKELEARIREIKEK 368
AIAA++DYF GE I E L + + R E++ K
Sbjct: 231 AIAAKIDYFRGE-IDESLYESIRRRYEELRRK 261
>gb|AAF60425.1| (AC006708) contains simlarity to Saccharomyces cerevisiae pre-mRNA
splicing protein PRP31 (GB:Z72876) [Caenorhabditis
elegans]
Length = 504
Score = 116 bits (289), Expect = 3e-25
Identities = 77/276 (27%), Positives = 134/276 (47%), Gaps = 2/276 (0%)
Query: 129 KMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEE 188
K++++ D+D IN++ +R+ Y FPE++ ++P Y++ V+ +G+ N +
Sbjct: 100 KLIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLLGNEINSKV 159
Query: 189 EKLRELGLSEEKIKKILEAK-EKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDK 247
K + G+ + ++ T G ++ ++ V D +L+ R E+ ++
Sbjct: 160 VKEQLGGILDASTCMVVSVTVSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEW 219
Query: 248 AMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPK 307
M +APNL AL+G+ A L+S AGGL LA +PS +QVLG K T + P
Sbjct: 220 RMALIAPNLVALLGSTTTAHLVSQAGGLSPLATMPSCNVQVLGKTKKNLIGFSTVSTNPH 279
Query: 308 HGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKE 367
HG IY + + + P + K A+ LA K+ + AR+D E E E A + E
Sbjct: 280 HGFIYFHQLVQKMPPDLKNKAAKILAAKVTLVARID-AQHESSNGEKGAEFLALVESKFE 338
Query: 368 KYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKR 403
K +PP K + +K KK+ +R ++ +R
Sbjct: 339 KMLEPPPVKANKALPKPLDKASKKRGGRRTRKMKER 374
>gi|7661654 DKFZP566J153 protein [Homo sapiens] >gi|4914604|emb|CAB43677.1|
(AL050369) hypothetical protein [Homo sapiens]
Length = 499
Score = 115 bits (284), Expect = 1e-24
Identities = 72/302 (23%), Positives = 149/302 (48%), Gaps = 8/302 (2%)
Query: 106 EDYYKVGVELTRLRIQEQSGARDKMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDE 165
E+Y + + + ++ ++++ A +++ +N++ +R+ YS FPE++
Sbjct: 68 EEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELES 127
Query: 166 ILPRHPQYVSFVKTIGHR-DNVEEEKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVV 224
++P Y+ VK +G+ D + + + L+ I + T G + E ++ +
Sbjct: 128 LVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERL 187
Query: 225 QDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSS 284
++ + L + + +Y++ M +APNL ++GA AA+++ +AGGL L+ +P+
Sbjct: 188 EEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKVPAC 247
Query: 285 TIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDY 344
I +LGA++ + + P G IY + P R K AR +A K +AARVD
Sbjct: 248 NIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDS 307
Query: 345 F---SGEYIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKG 401
F + + ELK E+E + +K+ +PP K+ + + ++KK+ +R ++
Sbjct: 308 FHESTEGKVGYELKDEIERKF----DKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMK 363
Query: 402 KR 403
+R
Sbjct: 364 ER 365
>gb|AAF49655.1| (AE003532) CG6876 gene product [Drosophila melanogaster]
Length = 501
Score = 113 bits (279), Expect = 5e-24
Identities = 76/276 (27%), Positives = 136/276 (48%), Gaps = 9/276 (3%)
Query: 130 MVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHR-DNVEE 188
+++ A D+D I+++ +E Y FPE+D ++ +Y+ VK +G+ D V+
Sbjct: 100 LIVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKELGNDLDQVKN 159
Query: 189 EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKA 248
+ + L++ I + T G + + + + E L + ++ +Y++
Sbjct: 160 NEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACEMAIELNNFKSKIYEYVESR 219
Query: 249 MDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKH 308
M +APNL +VGA AA+L+ +AGGL +L+ +P+ +QVLGA+K P
Sbjct: 220 MTFIAPNLSMIVGASTAAKLLGIAGGLSKLSKMPACNVQVLGAQKKTLSGFSQTQMLPHT 279
Query: 309 GVIYQYPAINRSPWWQRGKIARALAGKLAIAARVD----YFSGEYIAEELKKELEARIRE 364
G +Y + + R K AR +A K +AARVD GE I K+++E ++ +
Sbjct: 280 GYVYYSQIVQDTAPDLRRKAARLVAAKSVLAARVDACHESVHGE-IGLRFKEDVEKKLDK 338
Query: 365 IKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEK 400
++E PP + + KP + KKK+ K+ K K
Sbjct: 339 LQE---PPPVKFIKPLPKPIEGSKKKRGGKRVRKMK 371
>emb|CAC12367.1| (AL445067) nucleolar protein Nop56 related protein [Thermoplasma
acidophilum]
Length = 260
Score = 109 bits (271), Expect = 4e-23
Identities = 54/130 (41%), Positives = 87/130 (66%)
Query: 238 RKELEDYIDKAMDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFR 297
R +++D I + ++ PN LVG KLA L+ + GLR LA++P+S+IQ+LGAEKALF+
Sbjct: 131 RSQMDDAIRTRIKEIMPNTADLVGPKLAMDLLERSRGLRRLALMPASSIQMLGAEKALFQ 190
Query: 298 HLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKE 357
L G K PK+GVI+++P ++ RG+IAR +A K+AI AR D + ++++
Sbjct: 191 SLGQGKKNPKYGVIFKFPGLSALNPKARGRIARIIANKVAITARADLLGTHVDSRSMRED 250
Query: 358 LEARIREIKE 367
+E +IR++K+
Sbjct: 251 IEEKIRKVKK 260
>pir||T02269 hypothetical protein T13D8.6 - Arabidopsis thaliana
>gi|3249066|gb|AAC24050.1| (AC004473) Similar to S.
cerevisiae SIK1P protein gb|984964. ESTs gb|F15433 and
gb|AA395158 come from this gene. [Arabidopsis thaliana]
Length = 511
Score = 104 bits (258), Expect = 1e-21
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 3/276 (1%)
Query: 129 KMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEE 188
K+++ + D++ I ++ + +++ Y L F E++ ++ Y VK IG+ ++
Sbjct: 120 KLIVDCNQLSVDIENEIVIVHNFIKDKYKLKFQELESLVHHPIDYACVVKKIGNETDLAL 179
Query: 189 EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKA 248
L +L L I + T G+ + E ++ V + + L RK++ ++++
Sbjct: 180 VDLADL-LPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESK 238
Query: 249 MDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKH 308
M +APNL A+VG+ +AA+L+ AGGL LA +P+ +QVLG ++ + +
Sbjct: 239 MGSIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLAGFSSATSQSRV 298
Query: 309 GVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEK 368
G + Q +P + + R +A K +AARVD G+ + K IR+ EK
Sbjct: 299 GYLEQTEIYQSTPPGLQARAGRLVAAKSTLAARVDATRGDPLGIS-GKAFREEIRKKIEK 357
Query: 369 YPKPPKRKREERRKPWKEKKKKKKKKKREKEKGKRR 404
+ +PP R+ + P + + KK++ R K K R
Sbjct: 358 WQEPPP-ARQPKPLPVPDSEPKKRRGGRRLRKMKER 392
>pir||T39311 probable pre-mrna splicing factor - fission yeast
(Schizosaccharomyces pombe) >gi|2959374|emb|CAA17928.1|
(AL022117) splicing factor required for vegetative and
meiotic growth [Schizosaccharomyces pombe]
Length = 518
Score = 96.7 bits (237), Expect = 4e-19
Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 21/278 (7%)
Query: 130 MVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEE 189
+++ + ++D I L ++EWY FPE+ ++ Y V ++ ++++
Sbjct: 119 LIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSL--LNDLDNS 176
Query: 190 KLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAM 249
K + L + I T+G + + I+ V++ E I +L + ++++ +Y+ +
Sbjct: 177 KTKLSFLPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRI 236
Query: 250 DDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHG 309
VAPNL A+VG+ AA LI +AGGL L P+ + LG + + A +G
Sbjct: 237 SVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDYG 296
Query: 310 VIYQYPAINRSPWWQRGKIARALAGKLAIAARVD----YFSGEYIAEELKKELEARIREI 365
+Y + ++P R + R A K+A+AAR+D Y G + +KE+E +I
Sbjct: 297 FLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSF-GISARKEVERKI--- 352
Query: 366 KEKYPKPPKRK----------REERRKPWKEKKKKKKK 393
EK +PP +K R +RR+ + +K K++
Sbjct: 353 -EKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQ 389
>gi|6321528 pre-mRNA splicing protein; Prp31p [Saccharomyces cerevisiae]
>gi|2132400|pir||S64386 pre-mRNA splicing protein PRP31
- yeast (Saccharomyces cerevisiae)
>gi|1323135|emb|CAA97094.1| (Z72876) ORF YGR091w
[Saccharomyces cerevisiae]
Length = 494
Score = 93.6 bits (229), Expect = 4e-18
Identities = 100/383 (26%), Positives = 168/383 (43%), Gaps = 39/383 (10%)
Query: 55 KEKGYDEFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVE 114
+E +DE ++ ++ + KE K N E+ NP E L E+ +
Sbjct: 4 EEDYFDELEYDLADEVNEEKEDIQTKKLTTVNCQTEKF--NPFEILPESIELFRTLALIS 61
Query: 115 LTRLRIQEQSGARDKMV----------IQAIEALDDLDKVINLLVSRLR-------EWYS 157
RL + E + K+V I I+ L +++I L+ S ++ YS
Sbjct: 62 PDRLSLSETAQILPKIVDLKRILQQQEIDFIKLLPFFNEIIPLIKSNIKLMHNFLISLYS 121
Query: 158 LHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKK-------ILEAKEK 210
FPE+ ++P QY S V +I +N + + EL E K +L K
Sbjct: 122 RRFPELSSLIPSPLQY-SKVISILENENYSKNESDELFFHLENKAKLTREQILVLTMSMK 180
Query: 211 TMGAWMDETDIRVVQDFAEE---IDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAAR 267
T + DI+ E ++ L+KL++++ YI + +APN+ LVG ++AA+
Sbjct: 181 TSFKNKEPLDIKTRTQILEANSILENLWKLQEDIGQYIASKISIIAPNVCFLVGPEIAAQ 240
Query: 268 LISLAGGLRELAMLPSSTIQVLGAEKALFRHLRT-GAKPPKHGVIYQYPAINRSPWWQRG 326
LI+ AGG+ E + +PS I +G K L L T + + G ++ I + P
Sbjct: 241 LIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTLESGVRQEGYLFASDMIQKFPVSVHK 300
Query: 327 KIARALAGKLAIAARVDYFS-----GEYIAEELKKELEARIREIKEKYPKPPKRKREERR 381
++ R L K+++AARVD +A + K EL + R++ E P + +
Sbjct: 301 QMLRMLCAKVSLAARVDAGQKNGDRNTVLAHKWKAELSKKARKLSE---APSISETKALP 357
Query: 382 KPWKEKKKKKKKKKREKEKGKRR 404
P + KKK+ +K K K K R
Sbjct: 358 IPEDQPKKKRAGRKFRKYKEKFR 380
>emb|CAB62868.2| (AL035475) conserved hypothetical protein, MAL4P2.27 [Plasmodium
falciparum]
Length = 566
Score = 93.2 bits (228), Expect = 5e-18
Identities = 91/386 (23%), Positives = 175/386 (44%), Gaps = 37/386 (9%)
Query: 29 DKPEKVLDKLLKGEFVK---DLEVFLGELKEKGY-----DEFVFEHSELTRKAKELGYNA 80
+K K+ + L EF+ D++ ++ E +EK DE V E+ KE N
Sbjct: 97 NKERKISELLYDEEFLNMMNDIKTYMFEEEEKKKEKEKDDENVDGDEEIEVLLKEKDSN- 155
Query: 81 KTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVELTRLRIQEQSGARDKMVIQAIEALDD 140
+ NI ++ +N + +++Y D M+ + +E +
Sbjct: 156 --KINNIDNDKFNNNNNNNNSSSDEDNFYD-----------------DVMIEKCMETILK 196
Query: 141 LDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEK 200
+D I + +++ YS FPE+D I+ +Y+S V I + +++ ++ L
Sbjct: 197 IDTEILNIHKYVKDIYSTKFPELDSIVYSPVEYISVVNKIRNEVDLKNIDFSDI-LPNTT 255
Query: 201 IKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKAMDDVAPNLKALV 260
+ I A T G + + ++ F E +L + R + Y++ M +APN+ L+
Sbjct: 256 VMAITVASSMTTGICLPDNLLKNCISFCNEGIQLNEYRNIILLYLESKMFYLAPNVTMLL 315
Query: 261 GAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRS 320
G+ L ARLIS G L+ L+++ S + V+ + K L K G++ +
Sbjct: 316 GSSLTARLISAVGSLKNLSIISSQNLIVIASTKKSLFGLSNVHKTLGIGILCCSEIVQSV 375
Query: 321 PWWQRGKIARALAGKLAIAARVDYF----SGEYIAEELKKELEARIREIKEKYPKPPKRK 376
P + K LA K ++AAR+DYF G+Y L++ + + + +++E PP ++
Sbjct: 376 PDAYKKKAISLLASKCSLAARIDYFKKYKEGQY-GLLLRQYIISHLIKLQE---PPPLKQ 431
Query: 377 REERRKPWKEKKKKKKKKKREKEKGK 402
++ P +++K+K+ K+ K K K
Sbjct: 432 KKILPMPDEKRKRKRGGKRYRKLKEK 457
>sp|P49704|PR31_YEAST PRE-MRNA SPLICING FACTOR PRP31 >gi|969101|gb|AAA74984.1| (U31970)
Prp31p [Saccharomyces cerevisiae]
Length = 494
Score = 87.8 bits (214), Expect = 2e-16
Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 36/346 (10%)
Query: 55 KEKGYDEFVFEHSELTRKAKELGYNAKTEFPNIAGERLRSNPEEFLGENWYEDYYKVGVE 114
+E +DE ++ ++ + KE K N E+ NP E L E+ +
Sbjct: 4 EEDYFDELEYDLADEVNEEKEDIQTKKLTTVNCQTEKF--NPFEILPESIELFRTLALIS 61
Query: 115 LTRLRIQEQSGARDKMV----------IQAIEALDDLDKVINLLVSRLR-------EWYS 157
RL + E + K+V I I+ L +++I L+ S ++ YS
Sbjct: 62 PDRLSLSETAQILPKIVDLKRILQQQEIDFIKLLPFFNEIIPLIKSNIKLMHNFLISLYS 121
Query: 158 LHFPEIDEILPRHPQYVSFVKTIGHRDNVEEEKLRELGLSEEKIKK-------ILEAKEK 210
FPE+ ++P QY S V +I +N + + EL E K +L K
Sbjct: 122 RRFPELSSLIPSPLQY-SKVISILENENYSKNESDELFFHLENKAKLTREQILVLTMSMK 180
Query: 211 TMGAWMDETDIRVVQDFAEE---IDRLYKLRKELEDYIDKAMDDVAPNLKALVGAKLAAR 267
T + DI+ E ++ L+KL++++ YI + +APN+ LVG ++AA+
Sbjct: 181 TSFKNKEPLDIKTRTQILEANSILENLWKLQEDIGQYIASKISIIAPNVCFLVGPEIAAQ 240
Query: 268 LISLAGGLRELAMLPSSTIQVLGAEKALFRHLRT-GAKPPKHGVIYQYPAINRSPWWQRG 326
LI+ AGG+ E + +PS I +G K L L T + + G ++ I + P
Sbjct: 241 LIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTLESGVRQEGYLFASDMIQKFPVSVHK 300
Query: 327 KIARALAGKLAIAARVDYFS-----GEYIAEELKKELEARIREIKE 367
++ R L K+++AARVD +A + K EL + R++ E
Sbjct: 301 QMLRMLCAKVSLAARVDAGQKNGDRNTVLAHKWKAELSKKARKLSE 346
>pir||T47872 hypothetical protein T4C21.20 - Arabidopsis thaliana
>gi|7329671|emb|CAB82665.1| (AL162295) putative protein
[Arabidopsis thaliana]
Length = 442
Score = 85.0 bits (207), Expect = 1e-15
Identities = 69/281 (24%), Positives = 122/281 (42%), Gaps = 43/281 (15%)
Query: 129 KMVIQAIEALDDLDKVINLLVSRLREWYSLHFPEIDEILPRHPQYVSFVKTIGHRDNVEE 188
K+++ + D++ I ++ + ++E Y L F E++ ++ Y VK IG+ ++
Sbjct: 84 KLIVDCNKLSVDIEDEIVIVHNFIKEKYKLRFQELESLVHHPIDYACVVKKIGNETDLTL 143
Query: 189 EKLRELGLSEEKIKKILEAKEKTMGAWMDETDIRVVQDFAEEIDRLYKLRKELEDYIDKA 248
L L+ I I T G+ + E
Sbjct: 144 VDFAGLDLTPAIIMAISVTASTTKGSALPED----------------------------- 174
Query: 249 MDDVAPNLKALVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKH 308
M +APNL A+VG+ +AA+L+ AGGL LA +P+ +QVLG ++ + +
Sbjct: 175 MGSIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLVGFSSATSQSRV 234
Query: 309 GVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDY-------FSGEYIAEELKKELEAR 361
G + Q +P + R +A K +AARVD SG+ EE++K+++
Sbjct: 235 GYLEQTEIFQSTPPGLEARAGRLVAAKSTLAARVDATREDPLGISGKAFREEIRKKID-- 292
Query: 362 IREIKEKYPKPPKRKREERRKPWKEKKKKKKKKKREKEKGK 402
K + P PP R+ + P E KK++ ++ K K +
Sbjct: 293 ----KWQEP-PPARQPKPLPIPHSEPKKRRGGRRLRKLKAR 328
>emb|CAC00186.1| (AL160371) probable sar DNA-binding protein-1 [Leishmania major]
Length = 214
Score = 80.4 bits (195), Expect = 3e-14
Identities = 43/111 (38%), Positives = 68/111 (60%), Gaps = 2/111 (1%)
Query: 259 LVGAKLAARLISLAGGLRELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAIN 318
+VG ++ ARLI AG LA PSST+Q+LGAEKALFR L+ PK+G++Y +
Sbjct: 41 MVGEQIGARLIQKAGSXXXLAKYPSSTVQILGAEKALFRALKQRQATPKYGILYNASVVA 100
Query: 319 RSPWWQRGKIARALAGKLAIAARVDYF--SGEYIAEELKKELEARIREIKE 367
++ Q+ ++R LA K +++AR+D F A E + ++E R++ +E
Sbjct: 101 KAAPAQKSTMSRVLAAKASLSARIDSFGEGDNTPALEYRGKVENRLKAFEE 151
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152243778
Number of Sequences: 2977
Number of extensions: 6871264
Number of successful extensions: 93352
Number of sequences better than 1.0e-10: 50
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 92724
Number of HSP's gapped (non-prelim): 224
length of query: 404
length of database: 189,106,746
effective HSP length: 58
effective length of query: 346
effective length of database: 154,394,500
effective search space: 53420497000
effective search space used: 53420497000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)