BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2306 (flpa) DE:FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
(227 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75191 fibrillarin-like pre-rRNA processing protein PAB2306... 459 e-128
sp|O57811|FLPA_PYRHO FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 448 e-125
pir||G72527 probable fibrillarin APE2196 - Aeropyrum pernix (str... 259 2e-68
sp|P35553|FLPA_METVO FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 258 3e-68
sp|Q58108|FLPA_METJA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 252 2e-66
sp|P35552|FLPA_METVA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 252 3e-66
pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue... 247 9e-65
gb|AAF69254.1| (AF201093) fibrillarin homolog [Sulfolobus acidoc... 241 5e-63
gb|AAK41216.1| Fibrillarin-like pre-rRNA processing protein [Sul... 234 6e-61
sp|O27283|FLPA_METTH FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 221 5e-57
sp|Q22053|FBRL_CAEEL FIBRILLARIN >gi|7506840|pir||T24279 hypothe... 219 2e-56
gb|AAB62872.1| (AF007112) fibrillarin [Plasmodium falciparum] 216 2e-55
pir||T09555 fibrillarin - Arabidopsis thaliana >gi|4914455|emb|C... 214 8e-55
gb|AAG10103.1|AF233443_1 (AF233443) fibrillarin 1 [Arabidopsis t... 213 1e-54
sp|P22232|FBRL_XENLA FIBRILLARIN >gi|2134062|pir||I51417 fibrill... 212 3e-54
gb|AAF46950.1| (AE003459) Fib gene product [Drosophila melanogas... 210 1e-53
gb|AAF00542.1| (AF187871) fibrillarin homolog [Arabidopsis thali... 210 2e-53
gi|11425985 fibrillarin [Homo sapiens] >gi|105987|pir||A38712 fi... 209 3e-53
gi|4503661 fibrillarin [Homo sapiens] >gi|119853|sp|P22087|FBRL_... 209 3e-53
gb|AAC28913.1| (AC005393) FBRL_HUMAN; 34 KD NUCLEOLAR SCLERODERM... 209 3e-53
gi|6679755 fibrillarin [Mus musculus] >gi|544284|sp|P35550|FBRL_... 208 5e-53
emb|CAC18188.1| (AL451014) probable fibrillarin (NOP1) [Neurospo... 208 6e-53
gi|6320190 nucleolar protein, homologous to mammalian fibrillari... 207 1e-52
sp|Q27200|FBRL_TETTH FIBRILLARIN >gi|2654298|emb|CAA54924.1| (X7... 205 3e-52
gb|AAD13616.1| (AF110181) fibrillarin [Euglena gracilis] 205 5e-52
gb|AAC32120.1| (AF051216) probable fibrillarin [Picea mariana] 203 2e-51
sp|Q24957|FBRL_GIALA FIBRILLARIN >gi|11280294|pir||T47231 fibril... 201 6e-51
gb|AAF71690.1|AF168719_1 (AF168719) fibrillarin [Trypanosoma bru... 199 3e-50
sp|P35551|FBRL_SCHPO FIBRILLARIN >gi|422056|pir||S33690 fibrilla... 196 2e-49
sp|P35549|FBRL_LEIMA FIBRILLARIN >gi|425152|gb|AAA67420.1| (L262... 189 3e-47
sp|O53133|FLPA_METMA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEI... 187 1e-46
dbj|BAB10546.1| (AB019226) fibrillarin-like [Arabidopsis thaliana] 184 9e-46
gi|11499669 fibrillarin (fib) [Archaeoglobus fulgidus] >gi|60160... 162 2e-39
emb|CAC12078.1| (AL445066) fibrillarin-like pre-rRNA processing ... 152 5e-36
emb|CAA98571.1| (Z74061) ORF YDL014w [Saccharomyces cerevisiae] 139 2e-32
gb|AAD15623.1| (AC006950) FBRL_HUMAN [AA 1- 227]; 34 KD NUCLEOLA... 138 4e-32
gb|AAG19552.1| (AE005045) fibrillarin; Fib [Halobacterium sp. NR... 127 1e-28
gb|AAF54870.1| (AE003697) CG10909 gene product [Drosophila melan... 121 6e-27
gb|AAG21982.1| (AF263383) SKP1 interacting partner 7 [Arabidopsi... 81 1e-14
>pir||H75191 fibrillarin-like pre-rRNA processing protein PAB2306 - Pyrococcus
abyssi (strain Orsay) >gi|5457492|emb|CAB48983.1|
(AJ248283) FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
[Pyrococcus abyssi]
Length = 227
Score = 459 bits (1169), Expect = e-128
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MVEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGA 60
MVEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGA
Sbjct: 1 MVEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGA 60
Query: 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVED 120
AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVED
Sbjct: 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVED 120
Query: 121 RKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKS 180
RKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKS
Sbjct: 121 RKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKS 180
Query: 181 RSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPYEKDHALFVVRKT 227
RSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPYEKDHALFVVRKT
Sbjct: 181 RSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPYEKDHALFVVRKT 227
>sp|O57811|FLPA_PYRHO FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
>gi|7450786|pir||A71224 probable fibrillarin-like
pre-rRNA processing protein - Pyrococcus horikoshii
>gi|3256437|dbj|BAA29120.1| (AP000001) 227aa long
hypothetical fibrillarin-like pre-rRNA processing
protein [Pyrococcus horikoshii]
Length = 227
Score = 448 bits (1139), Expect = e-125
Identities = 218/227 (96%), Positives = 226/227 (99%)
Query: 1 MVEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGA 60
MVEVKKHKFPGVY VIDDDGSE+IATKNLVPGQRVYGERVIKWEGEEYRIWNP+RSKLGA
Sbjct: 1 MVEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGEEYRIWNPNRSKLGA 60
Query: 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVED 120
AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSD++GWEGKIFGIEFSPRVLRELVPIVE+
Sbjct: 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE 120
Query: 121 RKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKS 180
R+NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLK+GGYGMIAVKS
Sbjct: 121 RRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180
Query: 181 RSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPYEKDHALFVVRKT 227
RSIDVTKEPEQVFREVE+ELSEYFEVIERLNLEPYEKDHALFVVRKT
Sbjct: 181 RSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVRKT 227
>pir||G72527 probable fibrillarin APE2196 - Aeropyrum pernix (strain K1)
>gi|5105895|dbj|BAA81207.1| (AP000063) 233aa long
hypothetical fibrillarin [Aeropyrum pernix]
Length = 233
Score = 259 bits (655), Expect = 2e-68
Identities = 123/223 (55%), Positives = 175/223 (78%), Gaps = 2/223 (0%)
Query: 1 MVEVKKH-KFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLG 59
+V V++H ++ GVY+V +DGS +IATKNLVPGQRVYGER+ ++ GEEYR WN +RSKL
Sbjct: 4 VVSVREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGEEYREWNAYRSKLA 63
Query: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVE 119
AA++ GL P+K G +LYLGIASGTTASH+SD+IG G+I+G+EF+PRV+R+L+ +V
Sbjct: 64 AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123
Query: 120 DRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVK 179
DR+NI PILGDA PE+YR LV VD ++ DVAQP QA I++ NA +L+ GGY ++A+K
Sbjct: 124 DRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIK 183
Query: 180 SRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHAL 221
+RSIDVT EP +V+ RE++ + E+ + ++L+P+++DHA+
Sbjct: 184 ARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAM 226
>sp|P35553|FLPA_METVO FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN >gi|421710|pir||S34646
fibrillarin-like protein - Methanococcus voltae
>gi|394800|emb|CAA52166.1| (X73988) pre-rRNA processing
protein [Methanococcus voltae]
Length = 228
Score = 258 bits (653), Expect = 3e-68
Identities = 123/220 (55%), Positives = 169/220 (75%), Gaps = 4/220 (1%)
Query: 6 KHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNG 65
K KF V+ + DG ++I TK+LVP +RVYGE+++ + EYR+WNP++SKLGA+I+NG
Sbjct: 5 KEKFDNVFELDLGDGIKRIGTKSLVPNKRVYGEKLVNVKNTEYRVWNPNKSKLGASIING 64
Query: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIV 125
LK PIK G VLYLG ++GTT SHV+DV + ++ +EF+PR++RE + E RKN+
Sbjct: 65 LKEMPIKKGSKVLYLGASAGTTPSHVADVAE-DSPVYAVEFAPRIMREFIESCEGRKNLF 123
Query: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDV 185
PILGDA KPEEY +V KVDVIFEDVAQP QA+ILI NA+ +LKKGGYGMI++K+RS+DV
Sbjct: 124 PILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDV 183
Query: 186 TKEPEQVFREVEKELSEY--FEVIERLNLEPYEKDHALFV 223
T+ P +F E +KE+ E F++++ +N+EP+EKDH LFV
Sbjct: 184 TENPRVIF-EAQKEIMEQNGFKIVDAINIEPFEKDHMLFV 222
>sp|Q58108|FLPA_METJA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
>gi|2127901|pir||A64387 fibrillarin-like pre-rRNA
processing protein homolog - Methanococcus jannaschii
>gi|1591412|gb|AAB98690.1| (U67516) fibrillarin (fib)
[Methanococcus jannaschii]
Length = 230
Score = 252 bits (638), Expect = 2e-66
Identities = 123/226 (54%), Positives = 177/226 (77%), Gaps = 5/226 (2%)
Query: 1 MVEVK-KHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLG 59
M ++K K F +Y V DG ++IATK++V G++VY E++IK EEYRIWNP++SKL
Sbjct: 1 MEDIKIKEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDEEYRIWNPNKSKLA 60
Query: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVE 119
AAI+ GLK PIK +LYLG ++GTT SHV+D+ +G ++ IE++PR++REL+
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA 119
Query: 120 DRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVK 179
+R+NI+PILGDA KP+EY +V KVDVI+EDVAQP QA+ILI NA+ +LKKGGYGMIA+K
Sbjct: 120 ERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179
Query: 180 SRSIDVTKEPEQVFREVEKELSEY--FEVIERLNLEPYEKDHALFV 223
+RSIDVTK+P+++F+E +KE+ E F++++ +++EP+EKDH +FV
Sbjct: 180 ARSIDVTKDPKEIFKE-QKEILEAGGFKIVDEVDIEPFEKDHVMFV 224
>sp|P35552|FLPA_METVA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN >gi|421708|pir||S34645
fibrillarin-like protein - Methanococcus vannielii
>gi|394798|emb|CAA52165.1| (X73987) pre-rRNA processing
protein [Methanococcus vannielii]
Length = 230
Score = 252 bits (636), Expect = 3e-66
Identities = 123/219 (56%), Positives = 167/219 (76%), Gaps = 2/219 (0%)
Query: 6 KHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNG 65
K F VY V DG ++IATK+L PG+RVYGE++I E +EYRIWNP++SKLGAAI+NG
Sbjct: 7 KEIFSNVYGVDLGDGLKRIATKSLAPGKRVYGEKLIYSENKEYRIWNPNKSKLGAAIING 66
Query: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIV 125
LK PIK G VLYLG ++GTT SHVSD I + ++ +EF+PR++RE + +R N++
Sbjct: 67 LKKMPIKKGTKVLYLGASAGTTPSHVSD-ISEDTIVYAVEFAPRIMREFIDSCNERINLI 125
Query: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDV 185
PILGDA +P EY +V KVDVIFEDVAQP QA+IL+ NA+ +L K GY MI++K+RSIDV
Sbjct: 126 PILGDANRPFEYSNIVGKVDVIFEDVAQPNQAEILVKNAKWFLNKDGYAMISIKARSIDV 185
Query: 186 TKEPEQVFREVEKELSE-YFEVIERLNLEPYEKDHALFV 223
TK P+++F E +K L E F++++ +N+EP+EKDH +FV
Sbjct: 186 TKNPKEIFLEQKKILIEGGFDIVDEINIEPFEKDHIMFV 224
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 247 bits (624), Expect = 9e-65
Identities = 120/220 (54%), Positives = 170/220 (76%), Gaps = 4/220 (1%)
Query: 6 KHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNG 65
K F +Y V DG ++IATK++V G++VY E++IK EEYRIWNP++SKL AAI+ G
Sbjct: 7 KEIFENIYEVDLGDGLKRIATKSIVKGKKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKG 66
Query: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIV 125
LK PIK +LYLG ++GTT SHV+D+ +G ++ IE++PR+ REL+ +R+NI+
Sbjct: 67 LKVXPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIXRELLDACAERENII 125
Query: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDV 185
PILGDA KP+EY +V KVDVI+EDVAQP QA+ILI NA+ +LKKGGYG IA+K+RSIDV
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGXIAIKARSIDV 185
Query: 186 TKEPEQVFREVEKELSEY--FEVIERLNLEPYEKDHALFV 223
TK+P+++F+E +KE+ E F++++ +++EP+EKDH FV
Sbjct: 186 TKDPKEIFKE-QKEILEAGGFKIVDEVDIEPFEKDHVXFV 224
>gb|AAF69254.1| (AF201093) fibrillarin homolog [Sulfolobus acidocaldarius]
Length = 231
Score = 241 bits (609), Expect = 5e-63
Identities = 115/224 (51%), Positives = 161/224 (71%), Gaps = 1/224 (0%)
Query: 3 EVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAI 62
+V K +F VY I +DG+ ++ TKNL PG VYGER+IK+ G EYR WN RSKL AI
Sbjct: 6 KVTKTQFDNVYECIFNDGTTRLCTKNLSPGHNVYGERLIKYGGVEYREWNAFRSKLAGAI 65
Query: 63 MNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRK 122
+ GLK PI G +LYLG ASGTT SH+SD++ +GK++ +EFSPRV+REL+ + + R
Sbjct: 66 VKGLKYNPIVKGSKILYLGAASGTTPSHISDIVELQGKVYSVEFSPRVIRELLLVAQYRP 125
Query: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRS 182
N+ PIL DA P+ Y++LV VD+++ D+AQP + +I + NA +LKK GY MIA+KSRS
Sbjct: 126 NMFPILADARFPQYYKSLVENVDIVYVDIAQPNETEIAMYNARFFLKKNGYMMIAIKSRS 185
Query: 183 IDVTKEPEQVFREVEKELSEY-FEVIERLNLEPYEKDHALFVVR 225
IDVTK+P +++ K+L + F++ E L L+PY+KDHA+ VV+
Sbjct: 186 IDVTKDPREIYNAEAKKLEDAGFDIREVLELDPYDKDHAMIVVK 229
>gb|AAK41216.1| Fibrillarin-like pre-rRNA processing protein [Sulfolobus
solfataricus]
Length = 232
Score = 234 bits (591), Expect = 6e-61
Identities = 114/222 (51%), Positives = 159/222 (71%), Gaps = 1/222 (0%)
Query: 1 MVEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGA 60
++ VK+ +Y +DGS ++ T+NLVP VYGER+IK+EG EYR WN RSKL
Sbjct: 4 VITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAG 63
Query: 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVED 120
AI+ GLK PI+ G VLYLG ASGTT SHVSD+I GK +G+EFSPRV+REL+ + +
Sbjct: 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR 123
Query: 121 RKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKS 180
R NI P+L DA P+ Y+++V VDV++ D+AQP Q I I NA+ +LK G ++ +K+
Sbjct: 124 RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA 183
Query: 181 RSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHAL 221
RSIDVTK+P+++++ EVEK + FE I+ +NL+PY+KDHA+
Sbjct: 184 RSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAI 225
>sp|O27283|FLPA_METTH FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
>gi|7450787|pir||C69029 fibrillarin-like pre-rRNA
processing protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622325|gb|AAB85704.1| (AE000889) fibrillarin-like
pre-rRNA processing protein [Methanobacterium
thermoautotrophicum]
Length = 224
Score = 221 bits (558), Expect = 5e-57
Identities = 108/228 (47%), Positives = 160/228 (69%), Gaps = 8/228 (3%)
Query: 1 MVEVKKHK-FPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLG 59
M VK+ K GV+I+ + + T N PG +VYGER+I W G EYR+W+P RSKL
Sbjct: 1 MYAVKEVKGMDGVFIM-----NNSLLTINPNPGVKVYGERIIDWGGREYRVWDPRRSKLA 55
Query: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVE 119
AAI+NGL+ F + VLYLG ++GTTASH+SD++ +G+++ IEFSPR++REL+ + E
Sbjct: 56 AAILNGLRGFSLNSDSRVLYLGASAGTTASHISDIVT-DGRVYCIEFSPRMMRELLGVCE 114
Query: 120 DRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVK 179
RKN+ P+L DA++P Y +V D+++ DVAQP Q ++ I+N + +LK+ GYG+I +K
Sbjct: 115 SRKNMAPLLEDASRPLSYLRMVEAADLVYCDVAQPDQTRLFIENMDCFLKRDGYGLIMIK 174
Query: 180 SRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFVVRK 226
+RSIDVT+ P ++FR EV K S F +I+++ L PYEKDH +V++
Sbjct: 175 ARSIDVTRSPRKIFREEVGKLESSGFRIIDQVGLNPYEKDHMAVLVKR 222
>sp|Q22053|FBRL_CAEEL FIBRILLARIN >gi|7506840|pir||T24279 hypothetical protein T01C3.7 -
Caenorhabditis elegans >gi|3879244|emb|CAB01657.1|
(Z78413) predicted using Genefinder~Similarity to
Xenopus fibrillarin protein (SW:FBRL_XENLA), contains
similarity to Pfam domain: PF01269 (Fibrillarin),
Score=608.3, E-value=1.4e-179, N=1~cDNA EST yk51g11.5
comes from this gene; cDNA EST EMBL:M89444 c>
Length = 352
Score = 219 bits (552), Expect = 2e-56
Identities = 115/227 (50%), Positives = 157/227 (68%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE----EYRIWNPHRSK 57
V V+ H+ GV+IV + + +ATKN+V G+ VYGE+ + + EYR+WNP RSK
Sbjct: 117 VVVEPHRLGGVFIVKGKE--DALATKNMVVGESVYGEKRVSVDDGAGSIEYRVWNPFRSK 174
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L A+IM GL+N IKPG +LYLG ASGTT SH SDV+G EG ++ +EFS R R+L+ +
Sbjct: 175 LAASIMGGLENTHIKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYAVEFSHRSGRDLLGV 234
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R N+VPI+ DA P +YR LV VDVIF DVAQP QA+I+ NA+ +L+ GG+ +I+
Sbjct: 235 AKKRPNVVPIVEDARHPHKYRMLVGMVDVIFSDVAQPDQARIVALNAQNFLRNGGHAVIS 294
Query: 178 VKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T EPE VF EV K E F+ +E++ LEPYE+DHA+ V
Sbjct: 295 IKANCIDSTAEPEAVFAGEVNKLKEEKFKPLEQVTLEPYERDHAVVV 341
>gb|AAB62872.1| (AF007112) fibrillarin [Plasmodium falciparum]
Length = 301
Score = 216 bits (544), Expect = 2e-55
Identities = 112/225 (49%), Positives = 156/225 (68%), Gaps = 7/225 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGER----VIKWEGEEYRIWNPHRSK 57
V V H+FPGVY++ S+ + TKNLVPG+ VYGE+ + + E EYR+WNP RSK
Sbjct: 73 VIVVPHRFPGVYLL--KGKSDILVTKNLVPGESVYGEKRYEVMTEDEKIEYRVWNPFRSK 130
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
LGA +M G+ N PI+PG VLYLG A+GT+ SHVSD++G EG ++ +EFS R R+L +
Sbjct: 131 LGACLMGGVGNMPIRPGSKVLYLGAANGTSVSHVSDMVGDEGVVYAVEFSHRSGRDLTNM 190
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NIVPI+ DA +P +YR LV VDV+F DVAQP QA+I+ NA ++LK GG+ +I+
Sbjct: 191 SKKRSNIVPIVEDARQPTKYRMLVDMVDVVFADVAQPDQARIVAMNAHMFLKTGGWFIIS 250
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHAL 221
+K+ +D T +PE VF E+EK E + E+L LEP+ + HA+
Sbjct: 251 IKANCVDSTAKPEVVFASEMEKLKKENCKPKEKLTLEPFHRHHAI 295
>pir||T09555 fibrillarin - Arabidopsis thaliana >gi|4914455|emb|CAB43694.1|
(AL050400) fibrillarin-like protein [Arabidopsis
thaliana] >gi|7269413|emb|CAB81373.1| (AL161563)
fibrillarin-like protein [Arabidopsis thaliana]
>gi|9965655|gb|AAG10104.1|AF233444_1 (AF233444)
fibrillarin 2 [Arabidopsis thaliana]
>gi|9965796|gb|AAG10153.1| (AF267171) fibrillarin 2
[Arabidopsis thaliana]
Length = 320
Score = 214 bits (539), Expect = 8e-55
Identities = 115/228 (50%), Positives = 153/228 (66%), Gaps = 8/228 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V V+ H+ GV+I + + + TKNLVPG+ VY E+ I + E EYR+WNP RS
Sbjct: 80 VIVEPHRHAGVFIAKGKE--DALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRS 137
Query: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVP 116
KL AAI+ G+ N IKPG VLYLG ASGTT SHVSD++G EG ++ +EFS R R+LV
Sbjct: 138 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 197
Query: 117 IVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI 176
+ + R N++PI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 198 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVI 257
Query: 177 AVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223
++K+ ID T E VF+ EV+K E F+ E++ LEP+E+DHA V
Sbjct: 258 SIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVV 305
>gb|AAG10103.1|AF233443_1 (AF233443) fibrillarin 1 [Arabidopsis thaliana]
>gi|9965751|gb|AAG10152.1| (AF265547) fibrillarin 1
[Arabidopsis thaliana] >gi|10177413|dbj|BAB10544.1|
(AB019226) fibrillarin-like [Arabidopsis thaliana]
Length = 308
Score = 213 bits (538), Expect = 1e-54
Identities = 115/228 (50%), Positives = 153/228 (66%), Gaps = 8/228 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V V+ H+ GV+I + + + TKNLVPG+ VY E+ I + E EYR+WNP RS
Sbjct: 69 VIVEPHRHAGVFIAKGKE--DALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRS 126
Query: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVP 116
KL AAI+ G+ N IKPG VLYLG ASGTT SHVSD++G EG ++ +EFS R R+LV
Sbjct: 127 KLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVN 186
Query: 117 IVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI 176
+ + R N++PI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+ +I
Sbjct: 187 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVI 246
Query: 177 AVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223
++K+ ID T E VF+ EV+K E F+ E++ LEP+E+DHA V
Sbjct: 247 SIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVV 294
>sp|P22232|FBRL_XENLA FIBRILLARIN >gi|2134062|pir||I51417 fibrillarin - African clawed
frog >gi|214144|gb|AAA49710.1| (M28874) fibrillarin
[Xenopus laevis]
Length = 323
Score = 212 bits (534), Expect = 3e-54
Identities = 114/227 (50%), Positives = 152/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWE-GE---EYRIWNPHRSK 57
V V+ H+ G++I + + + TKNLVPG+ VYGE+ I E GE EYR WNP RSK
Sbjct: 88 VIVEPHRHEGIFICRGKE--DALVTKNLVPGESVYGEKRISVEDGEVKTEYRAWNPFRSK 145
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
+ AAI+ G+ IKPG VLYLG ASGTT SHVSDV+G EG ++ +EFS R R+L+ +
Sbjct: 146 IAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 205
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+P++ DA P +YR LV VDV+F DVAQP Q +I+ NA +LK GG+ +I+
Sbjct: 206 AKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGHFVIS 265
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T PE VF EV+K E + E+L LEPYE+DHA+ V
Sbjct: 266 IKANCIDSTAAPEAVFAAEVKKMQQENMKPQEQLTLEPYERDHAVVV 312
>gb|AAF46950.1| (AE003459) Fib gene product [Drosophila melanogaster]
Length = 344
Score = 210 bits (529), Expect = 1e-53
Identities = 110/227 (48%), Positives = 153/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWE--GE--EYRIWNPHRSK 57
V ++ H+ GV+I + + + T+N VPG VYGE+ I E GE EYR+WNP RSK
Sbjct: 111 VTIEPHRHEGVFIARGKE--DALVTRNFVPGSEVYGEKRISVETNGEKIEYRVWNPFRSK 168
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AA++ G++ + PG VLYLG ASGTT SHVSDV+G EG ++ +EFS R R+L+ +
Sbjct: 169 LAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 228
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+PI+ DA P +YR LV VD IF DVAQP Q +I+ NA+ +LK GG+ +I+
Sbjct: 229 AKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVIS 288
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T +PE VF EV+K ++ + E+L LEPYE+DHA+ V
Sbjct: 289 IKASCIDSTAQPEAVFAAEVKKMQADKLKPQEQLTLEPYERDHAVVV 335
>gb|AAF00542.1| (AF187871) fibrillarin homolog [Arabidopsis thaliana]
Length = 310
Score = 210 bits (528), Expect = 2e-53
Identities = 116/230 (50%), Positives = 153/230 (66%), Gaps = 10/230 (4%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V V+ H+ GV+I + + + TKNLVPG+ VY E+ I + E EYR+WNP RS
Sbjct: 69 VIVEPHRHAGVFIAKGKE--DALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRS 126
Query: 57 KLGAAIMNG--LKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLREL 114
KL AAI+ G L N IKPG VLYLG ASGTT SHVSD++G EG ++ +EFS R R+L
Sbjct: 127 KLAAAILGGVDLDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDL 186
Query: 115 VPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYG 174
V + + R N++PI+ DA P +YR LV VDVIF DVAQP QA+IL NA +LK GG+
Sbjct: 187 VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHF 246
Query: 175 MIAVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223
+I++K+ ID T E VF+ EV+K E F+ E++ LEP+E+DHA V
Sbjct: 247 VISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVV 296
>gi|11425985 fibrillarin [Homo sapiens] >gi|105987|pir||A38712 fibrillarin
[validated] - human >gi|31395|emb|CAA39935.1| (X56597)
fibrillarin [Homo sapiens]
Length = 321
Score = 209 bits (526), Expect = 3e-53
Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGE-RVIKWEGE---EYRIWNPHRSK 57
V V+ H+ GV+I + + + TKNLVPG+ VYGE RV EG+ EYR WNP RSK
Sbjct: 86 VMVEPHRHEGVFICRGKE--DALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSK 143
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AAI+ G+ IKPG VLYLG ASGTT SHVSD++G +G ++ +EFS R R+L+ +
Sbjct: 144 LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 203
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+P++ DA P +YR L+ VDVIF DVAQP Q +I+ NA +L+ GG+ +I+
Sbjct: 204 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS 263
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T E VF EV+K E + E+L LEPYE+DHA+ V
Sbjct: 264 IKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVV 310
>gi|4503661 fibrillarin [Homo sapiens] >gi|119853|sp|P22087|FBRL_HUMAN
FIBRILLARIN (34 KD NUCLEOLAR SCLERODERMA ANTIGEN)
>gi|182592|gb|AAA52453.1| (M59849) fibrillarin [Homo
sapiens]
Length = 321
Score = 209 bits (526), Expect = 3e-53
Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGE-RVIKWEGE---EYRIWNPHRSK 57
V V+ H+ GV+I + + + TKNLVPG+ VYGE RV EG+ EYR WNP RSK
Sbjct: 86 VMVEPHRHEGVFICRGKE--DALVTKNLVPGESVYGEKRVSISEGDDKFEYRAWNPFRSK 143
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AAI+ G+ IKPG VLYLG ASGTT SHVSD++G +G ++ +EFS R R+L+ +
Sbjct: 144 LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 203
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+P++ DA P +YR L+ VDVIF DVAQP Q +I+ NA +L+ GG+ +I+
Sbjct: 204 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS 263
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T E VF EV+K E + E+L LEPYE+DHA+ V
Sbjct: 264 IKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVV 310
>gb|AAC28913.1| (AC005393) FBRL_HUMAN; 34 KD NUCLEOLAR SCLERODERMA ANTIGEN [Homo
sapiens]
Length = 318
Score = 209 bits (526), Expect = 3e-53
Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGE-RVIKWEGE---EYRIWNPHRSK 57
V V+ H+ GV+I + + + TKNLVPG+ VYGE RV EG+ EYR WNP RSK
Sbjct: 83 VMVEPHRHEGVFICRGKE--DALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSK 140
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AAI+ G+ IKPG VLYLG ASGTT SHVSD++G +G ++ +EFS R R+L+ +
Sbjct: 141 LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 200
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+P++ DA P +YR L+ VDVIF DVAQP Q +I+ NA +L+ GG+ +I+
Sbjct: 201 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS 260
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T E VF EV+K E + E+L LEPYE+DHA+ V
Sbjct: 261 IKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVV 307
>gi|6679755 fibrillarin [Mus musculus] >gi|544284|sp|P35550|FBRL_MOUSE
FIBRILLARIN (NUCLEOLAR PROTEIN 1) >gi|481220|pir||S38342
fibrillarin - mouse >gi|296548|emb|CAA80307.1| (Z22593)
fibrillarin [Mus musculus]
Length = 327
Score = 208 bits (524), Expect = 5e-53
Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 7/227 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGE-RVIKWEGE---EYRIWNPHRSK 57
V V+ H+ GV+I + + + TKNLVPG+ VYGE RV EG+ EYR WNP RSK
Sbjct: 92 VMVEPHRHEGVFICRGKE--DALFTKNLVPGESVYGEKRVSISEGDDTIEYRAWNPFRSK 149
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AAI+ G+ IKPG VLYLG ASGTT SHVSD++G +G ++ +EFS R R+L+ +
Sbjct: 150 LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 209
Query: 118 VEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIA 177
+ R NI+P++ DA P +YR L+ VDVIF DVAQP Q +I+ NA +L+ GG+ +I+
Sbjct: 210 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS 269
Query: 178 VKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+K+ ID T E VF EV+K E + E+L LEPYE+DHA+ V
Sbjct: 270 IKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVV 316
>emb|CAC18188.1| (AL451014) probable fibrillarin (NOP1) [Neurospora crassa]
Length = 342
Score = 208 bits (523), Expect = 6e-53
Identities = 112/232 (48%), Positives = 152/232 (65%), Gaps = 13/232 (5%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----------EYRI 50
V V+ H+ GV++ + +AT NLVPG+ VYGE+ I E EYRI
Sbjct: 99 VIVEPHRHKGVFVARGGK-EDLLATVNLVPGESVYGEKRISVENASKEEGGASTKTEYRI 157
Query: 51 WNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRV 110
WNP RSKL A I+ GL+ +KPG VLYLG ASGT+ SHV+D++G G ++ +EFS R
Sbjct: 158 WNPFRSKLAAGILGGLETIYMKPGSKVLYLGAASGTSVSHVADIVGPTGSVYAVEFSHRS 217
Query: 111 LRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKK 170
R+L+ + R N++PI+ DA KP YR L+P VDVIF DVAQP QA+I+ NA+++LK+
Sbjct: 218 GRDLINMATRRTNVIPIVEDARKPMAYRMLLPMVDVIFADVAQPDQARIVGINAKLFLKQ 277
Query: 171 GGYGMIAVKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHAL 221
GG +I++K+ ID T PEQVF EV+K + F E+L LEPYE+DHA+
Sbjct: 278 GGGLLISIKASCIDSTAPPEQVFASEVQKLREDKFFPKEQLTLEPYERDHAM 329
>gi|6320190 nucleolar protein, homologous to mammalian fibrillarin; Nop1p
[Saccharomyces cerevisiae]
>gi|119857|sp|P15646|FBRL_YEAST FIBRILLARIN (NUCLEOLAR
PROTEIN 1) >gi|101461|pir||S25421 nucleolar protein NOP1
- yeast (Saccharomyces cerevisiae)
>gi|172048|gb|AAA34816.1| (J05230) fibrillarin
[Saccharomyces cerevisiae] >gi|683683|emb|CAA88345.1|
(Z48432) nucleolar protein NOP1 (J05230) [Saccharomyces
cerevisiae] >gi|1430979|emb|CAA98572.1| (Z74062) ORF
YDL014w [Saccharomyces cerevisiae]
Length = 327
Score = 207 bits (521), Expect = 1e-52
Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 14/236 (5%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----------EYRI 50
V ++ H+ GVYI + + + TKN+ PG+ VYGE+ I E EYR+
Sbjct: 86 VVIEPHRHAGVYIARGKE--DLLVTKNMAPGESVYGEKRISVEEPSKEDGVPPTKVEYRV 143
Query: 51 WNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRV 110
WNP RSKL A IM GL I PGK VLYLG ASGT+ SHVSDV+G EG ++ +EFS R
Sbjct: 144 WNPFRSKLAAGIMGGLDELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRP 203
Query: 111 LRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKK 170
REL+ + + R NI+PI+ DA P++YR L+ VD +F DVAQP QA+I+ N+ ++LK
Sbjct: 204 GRELISMAKKRPNIIPIIEDARHPQKYRMLIGMVDCVFADVAQPDQARIIALNSHMFLKD 263
Query: 171 GGYGMIAVKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFVVR 225
G +I++K+ ID T + E VF REV+K E + +E+L LEPYE+DH + V R
Sbjct: 264 QGGVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGR 319
>sp|Q27200|FBRL_TETTH FIBRILLARIN >gi|2654298|emb|CAA54924.1| (X77962) fibrillarin
[Tetrahymena thermophila]
Length = 294
Score = 205 bits (517), Expect = 3e-52
Identities = 110/223 (49%), Positives = 149/223 (66%), Gaps = 7/223 (3%)
Query: 4 VKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWE--GE--EYRIWNPHRSKLG 59
+ KH+ GV+I E + TKN PG+ VY E+ + E GE EYR+WNP+RSK+
Sbjct: 67 IVKHRLEGVFICKGQ--LEALVTKNFFPGESVYNEKRMSVEENGEKIEYRVWNPYRSKIA 124
Query: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVE 119
AA++ G+ + IKPG VLYLG ASGTT SHV+D++G G ++ +EFS R R+LV + +
Sbjct: 125 AAVVGGISDIHIKPGSKVLYLGGASGTTVSHVADIVGPTGVVYAVEFSHRSGRDLVNMAK 184
Query: 120 DRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVK 179
R N+VPI+GDA KP+EYR LV VDV+F DVAQP QA+I+ N +LK GG+ +I++K
Sbjct: 185 KRTNVVPIIGDARKPQEYRFLVGMVDVVFADVAQPDQARIMGMNCLYFLKNGGHFLISIK 244
Query: 180 SRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHAL 221
+ ID T EP VF EV+K E + L LEPYE+DHA+
Sbjct: 245 ACCIDSTNEPAVVFAAEVQKLKEEGLKPELLLTLEPYERDHAM 287
>gb|AAD13616.1| (AF110181) fibrillarin [Euglena gracilis]
Length = 281
Score = 205 bits (515), Expect = 5e-52
Identities = 112/232 (48%), Positives = 148/232 (63%), Gaps = 10/232 (4%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEG---------EEYRIWN 52
V V+ HK V + +AT NLVPG VYGE+ ++ E +EYR+WN
Sbjct: 40 VVVEPHKVHAGIFVSRGKSEDSLATLNLVPGVSVYGEKRVQTETTDANGAPEKKEYRVWN 99
Query: 53 PHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLR 112
P+RSKL AA++ G+ N + PG VLYLG ASGTT SHVSD++G G ++ +EFS R R
Sbjct: 100 PYRSKLAAAVVGGIDNCKVAPGAKVLYLGAASGTTVSHVSDIVGPTGIVYAVEFSHRSGR 159
Query: 113 ELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGG 172
+LV + + R NIVPI+ DA P+ YR LV VD IF DVAQP QA+IL NA+ +LK G
Sbjct: 160 DLVEMSKRRPNIVPIVADARNPKAYRMLVGMVDCIFMDVAQPDQARILAINAKQFLKADG 219
Query: 173 YGMIAVKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+ MI++K+ ID T EP VF EVEK +E E++ LEP+E+DHA+ V
Sbjct: 220 WFMISIKAPCIDSTIEPAVVFAAEVEKMKAEQLRPKEQITLEPFERDHAVVV 271
>gb|AAC32120.1| (AF051216) probable fibrillarin [Picea mariana]
Length = 249
Score = 203 bits (511), Expect = 2e-51
Identities = 108/228 (47%), Positives = 149/228 (64%), Gaps = 8/228 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V ++ H+ GV+I + + + TKN+ G+ VYGE+ I + E EYR+WNP RS
Sbjct: 8 VVIEPHRHEGVFIAKAKE--DALVTKNMAAGESVYGEKRISVQNEDSTKTEYRVWNPFRS 65
Query: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVP 116
KL AAI+ G+ N IKPG VLYLG ASGTT SHVSD++G G ++ +E S R R+LV
Sbjct: 66 KLAAAILGGVDNIWIKPGTHVLYLGAASGTTVSHVSDIVGPTGIVYAVEMSHRSGRDLVN 125
Query: 117 IVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI 176
+ + R N++PI+ DA P YR LV VDVIF DVAQP QA+I+ NA +LK GG+ ++
Sbjct: 126 MAKKRTNVIPIIEDARYPVRYRMLVGMVDVIFADVAQPDQARIVALNAHYFLKNGGHFVL 185
Query: 177 AVKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
++K+ ID T E VF +EV+K E F+ E++ LEP+E+DHA V
Sbjct: 186 SIKANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVV 233
>sp|Q24957|FBRL_GIALA FIBRILLARIN >gi|11280294|pir||T47231 fibrillarin [imported] -
Giardia intestinalis >gi|520825|gb|AAA21687.1| (L28115)
fibrillarin [Giardia intestinalis]
Length = 327
Score = 201 bits (506), Expect = 6e-51
Identities = 107/228 (46%), Positives = 149/228 (64%), Gaps = 8/228 (3%)
Query: 4 VKKH-KFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE----YRIWNPHRSKL 58
VK H K+ G++I + + TK+L PG VYGE+ I EG E YR WNP RSKL
Sbjct: 96 VKPHPKYDGIFI--SHGRGDVLVTKSLAPGVAVYGEKRISVEGTESKIEYREWNPFRSKL 153
Query: 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIV 118
GAA+ + + PIKPG VLYLG ASGTT SHVSD++G G ++ +EFS R R+L+ +
Sbjct: 154 GAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVA 213
Query: 119 EDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAV 178
+ R N+ PI+ DA P +YR +VP+VD IF DVAQP QA+I+ +NA YLK G +I++
Sbjct: 214 KARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISI 273
Query: 179 KSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFVVR 225
K+ S+D T +PE VF RE+E F+ E+L++ + ++HA+ V R
Sbjct: 274 KASSVDSTLKPEAVFAREIETLREHDFKCKEQLDIGEFHRNHAIVVGR 321
>gb|AAF71690.1|AF168719_1 (AF168719) fibrillarin [Trypanosoma brucei rhodesiense]
Length = 300
Score = 199 bits (500), Expect = 3e-50
Identities = 105/222 (47%), Positives = 150/222 (67%), Gaps = 10/222 (4%)
Query: 10 PGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKW-------EGEEYRIWNPHRSKLGAAI 62
PGV+I ++ + T N+VPG VYGE+ ++ E +EYR+WNP+RSKL AAI
Sbjct: 69 PGVFI--SKGKADSLCTLNMVPGVSVYGEKRVEVGATQSGDEKKEYRLWNPYRSKLAAAI 126
Query: 63 MNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRK 122
G+ + +KPG VLYLG ASGTT SHVSD++G EG ++ +EFS R R+LV + + R
Sbjct: 127 YAGIGSIHMKPGSKVLYLGAASGTTVSHVSDLVGPEGMVYAVEFSNRSGRDLVDMSKRRP 186
Query: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRS 182
NIVPI+ DA P +YR L+P VD IF DVAQP QA+IL NA+ +LK GG+ +I++K+
Sbjct: 187 NIVPIIEDARYPMKYRMLMPMVDCIFMDVAQPDQARILALNAQAFLKNGGHYVISIKANC 246
Query: 183 IDVTKE-PEQVFREVEKELSEYFEVIERLNLEPYEKDHALFV 223
ID T + P + E++K + + +E+ +LEP+E+DHA+ V
Sbjct: 247 IDSTLDAPVVIAAELDKLRKDRLKPLEQASLEPFERDHAVVV 288
>sp|P35551|FBRL_SCHPO FIBRILLARIN >gi|422056|pir||S33690 fibrillarin - fission yeast
(Schizosaccharomyces pombe) >gi|296704|emb|CAA49550.1|
(X69930) fibrillarin [Schizosaccharomyces pombe]
>gi|3687500|emb|CAA21168.1| (AL031788) fibrillarin.
[Schizosaccharomyces pombe]
Length = 305
Score = 196 bits (493), Expect = 2e-49
Identities = 106/228 (46%), Positives = 148/228 (64%), Gaps = 8/228 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V ++ H+ GV+I + + + T+NLVPG+ VY E+ I + EYR+WNP RS
Sbjct: 73 VIIEPHRHAGVFIARGKE--DLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRS 130
Query: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVP 116
KL A I+ GL N IKPG VLYLG A+GT+ SHV+DV+G EG ++ +EFS R R+L+
Sbjct: 131 KLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLN 190
Query: 117 IVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI 176
+ + R N++PI+ DA ++YR LV VDV+F DVAQP QA+I+ NA +LK G +I
Sbjct: 191 MAKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVALNAAAFLKNEGGVVI 250
Query: 177 AVKSRSIDVTKEPEQVF-REVEKELSEYFEVIERLNLEPYEKDHALFV 223
+VK+ ID T + VF REV+K E + E+L LEPYE+DH + V
Sbjct: 251 SVKASCIDSTADAAVVFAREVKKMQEEKIKPQEQLTLEPYERDHCIIV 298
>sp|P35549|FBRL_LEIMA FIBRILLARIN >gi|425152|gb|AAA67420.1| (L26252) fibrillarin
[Leishmania major]
Length = 297
Score = 189 bits (474), Expect = 3e-47
Identities = 103/222 (46%), Positives = 149/222 (66%), Gaps = 11/222 (4%)
Query: 10 PGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKW-------EGEEYRIWNPHRSKLGAAI 62
PGV+I ++ + T N+VPG VYGE+ I+ + +EYR+WNP+RSKL +AI
Sbjct: 68 PGVFI--SKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAI 125
Query: 63 MNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRK 122
G+ + + PG VLYLG A+GTT SHVSD++G EG ++ +EFS RV R+LV + R+
Sbjct: 126 YAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVE-MSKRR 184
Query: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRS 182
IVPI+ DA P +YR LVP VD IF DVAQP QA+IL NA+ +L+ GG+ +I++K+
Sbjct: 185 PIVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANC 244
Query: 183 IDVTKE-PEQVFREVEKELSEYFEVIERLNLEPYEKDHALFV 223
ID T E P + E+ K + + +E+++LEP+E+DHA+ V
Sbjct: 245 IDSTLEAPVVIASELNKLKKDKLKPLEQVSLEPFERDHAVVV 286
>sp|O53133|FLPA_METMA FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
>gi|11357085|pir||T47220 fibrillarin [imported] -
Methanosarcina mazei (fragment)
>gi|2791993|emb|CAA76128.1| (Y16231) fibrillarin
[Methanosarcina mazei]
Length = 193
Score = 187 bits (469), Expect = 1e-46
Identities = 92/188 (48%), Positives = 131/188 (68%), Gaps = 4/188 (2%)
Query: 11 GVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNGLKNFP 70
G++ V D ++++T NL PG+ VYGE++I EG+EYR W+P RSKLGA ++ + P
Sbjct: 10 GIFEVTKD--KKQLSTLNLDPGKVVYGEKLISVEGDEYRTWDPRRSKLGAMVLKKF-DIP 66
Query: 71 IKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGD 130
+K VLYLG ASGTT SHVSD++ EG ++ +EF+PR +R+ + + RKNI PIL D
Sbjct: 67 LKRNSKVLYLGAASGTTVSHVSDIVS-EGAVYSVEFAPRSMRDFIGLASRRKNIFPILAD 125
Query: 131 ATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPE 190
A KP+ Y +V VDVIF+DVAQP QA+I NA +LKK GY ++++K+RSID P+
Sbjct: 126 AGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNAVRFLKKDGYLLLSIKARSIDTAASPK 185
Query: 191 QVFREVEK 198
++F+E K
Sbjct: 186 EIFKEEVK 193
>dbj|BAB10546.1| (AB019226) fibrillarin-like [Arabidopsis thaliana]
Length = 292
Score = 184 bits (462), Expect = 9e-46
Identities = 103/225 (45%), Positives = 139/225 (61%), Gaps = 8/225 (3%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRS 56
V V H+ GV++ ++ + TKNLVPG+ +Y E+ I + E EYR+WNPHRS
Sbjct: 59 VLVTPHRHAGVFVA--KSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRS 116
Query: 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVP 116
KL AI G+ N IKPG VLYLG +SG T SHVSD++G EG ++ +E S + L+
Sbjct: 117 KLADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLMN 176
Query: 117 IVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI 176
+ E R N++PI+ DA P +YR LV VD+IF DV P QA IL NA +LK GG+ MI
Sbjct: 177 MAEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMI 236
Query: 177 AVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHA 220
++K+ SID T E V++ EVEK E E L+L+ E+ HA
Sbjct: 237 SIKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHA 281
>gi|11499669 fibrillarin (fib) [Archaeoglobus fulgidus]
>gi|6016032|sp|O28192|FLPA_ARCFU FIBRILLARIN-LIKE
PRE-RRNA PROCESSING PROTEIN >gi|7450788|pir||F69510
fibrillarin (fib) homolog - Archaeoglobus fulgidus
>gi|2648447|gb|AAB89169.1| (AE000960) fibrillarin (fib)
[Archaeoglobus fulgidus]
Length = 210
Score = 162 bits (407), Expect = 2e-39
Identities = 84/184 (45%), Positives = 125/184 (67%), Gaps = 6/184 (3%)
Query: 36 YGERVIKWEGEEYRIWNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVI 95
YGE+V + YR W P RSKL A I+ G ++ + VLYLG ASGTT SH++D++
Sbjct: 25 YGEKVF----DGYREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIV 79
Query: 96 GWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPT 155
EG I+ +E+S + +L+ +V +R NI+P+L DA+KP +Y +V KVD+I++D+AQ
Sbjct: 80 D-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKN 138
Query: 156 QAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPY 215
Q +IL NAE +LK+ G +I VK+RSID T EPE+VF+ V KE+ F++++ +L PY
Sbjct: 139 QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPY 198
Query: 216 EKDH 219
+DH
Sbjct: 199 HRDH 202
>emb|CAC12078.1| (AL445066) fibrillarin-like pre-rRNA processing protein related
protein [Thermoplasma acidophilum]
Length = 230
Score = 152 bits (379), Expect = 5e-36
Identities = 80/192 (41%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Query: 33 QRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVS 92
++VYGE +I++E YR W P RSKL AAI+ GL N PI S+LYLG ++GTT SHVS
Sbjct: 36 KKVYGEDIIRFEHANYREWRPDRSKLAAAILKGLHNMPIGESSSILYLGASTGTTVSHVS 95
Query: 93 DVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVA 152
D I G+I+ +E + +L+ + E R NI PIL DA PE YR V VDVI++D++
Sbjct: 96 D-IAPSGRIYAVEVAYEPFSKLLDLAEQRDNIYPILEDANLPERYRFFVDHVDVIYQDIS 154
Query: 153 QPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFREVEKELSEYFEVIERLNL 212
Q Q I N + + + + + +K+RSI T++ + + R+ ++LS Y + E ++L
Sbjct: 155 QRNQIAIFKRNMDEFQPRSAF--LVLKTRSIASTEDAKTILRKTIEQLSSY-NIREVIDL 211
Query: 213 EPYEKDHALFVV 224
PY+ DH L +V
Sbjct: 212 SPYDTDHYLILV 223
>emb|CAA98571.1| (Z74061) ORF YDL014w [Saccharomyces cerevisiae]
Length = 154
Score = 139 bits (348), Expect = 2e-32
Identities = 71/146 (48%), Positives = 101/146 (68%), Gaps = 1/146 (0%)
Query: 81 GIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRAL 140
G ASGT+ SHVSDV+G EG ++ +EFS R REL+ + + R NI+PI+ DA P++YR L
Sbjct: 1 GAASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRPNIIPIIEDARHPQKYRML 60
Query: 141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVF-REVEKE 199
+ VD +F DVAQP QA+I+ N+ ++LK G +I++K+ ID T + E VF REV+K
Sbjct: 61 IGMVDCVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVDAETVFAREVQKL 120
Query: 200 LSEYFEVIERLNLEPYEKDHALFVVR 225
E + +E+L LEPYE+DH + V R
Sbjct: 121 REERIKPLEQLTLEPYERDHCIVVGR 146
>gb|AAD15623.1| (AC006950) FBRL_HUMAN [AA 1- 227]; 34 KD NUCLEOLAR SCLERODERMA
ANTIGEN [Homo sapiens]
Length = 227
Score = 138 bits (345), Expect = 4e-32
Identities = 72/144 (50%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGE-RVIKWEGE---EYRIWNPHRSK 57
V V+ H+ GV+I + + + TKNLVPG+ VYGE RV EG+ EYR WNP RSK
Sbjct: 86 VMVEPHRHEGVFICRGKE--DALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSK 143
Query: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPI 117
L AAI+ G+ IKPG VLYLG ASGTT SHVSD++G +G ++ +EFS R R+L+ +
Sbjct: 144 LAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL 203
Query: 118 VEDRKNIVPILGDATKPEEYRALV 141
+ R NI+P++ DA P +YR L+
Sbjct: 204 AKKRTNIIPVIEDARHPHKYRMLI 227
>gb|AAG19552.1| (AE005045) fibrillarin; Fib [Halobacterium sp. NRC-1]
Length = 210
Score = 127 bits (316), Expect = 1e-28
Identities = 79/208 (37%), Positives = 120/208 (56%), Gaps = 16/208 (7%)
Query: 17 DDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIMNGLKNFPIKPGKS 76
D+DG +AT+ G+ YGE V+ + +R W+ HRSKLGA GL + G +
Sbjct: 14 DEDGV--LATR----GEPAYGEPVV----DGWRRWDAHRSKLGATFELGLDT-GLSGGDA 62
Query: 77 VLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEE 136
VLYLG A+GTT SHV+D + G + +EF+PR + +L+ + + R+ + P+L DA PE
Sbjct: 63 VLYLGAANGTTVSHVAD---FAGPTYAVEFAPRPVTDLLAVADSRERLFPLLKDARAPET 119
Query: 137 YRALVPK-VDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFRE 195
Y +V VD I +DVA QA + + N + +L G + A+K+RS DVT +P VF +
Sbjct: 120 YAHVVESGVDAIVQDVATRGQADVALSNRQ-FLADDGRLVAALKARSEDVTADPAAVFED 178
Query: 196 VEKELSEYFEVIERLNLEPYEKDHALFV 223
+ L + +EV +EP+ +DH V
Sbjct: 179 LLGRLRDGYEVRATARMEPFHEDHLAVV 206
>gb|AAF54870.1| (AE003697) CG10909 gene product [Drosophila melanogaster]
Length = 349
Score = 121 bits (301), Expect = 6e-27
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)
Query: 4 VKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE----YRIWNPHRSKLG 59
++ H+ GVY++ + + ++ T+N YGER + E E +R+W+P +SKL
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSKLA 173
Query: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVE 119
A IM G+ + ++ G VLYLG G + SH+SD++G G ++ +E P R+L +
Sbjct: 174 AGIMGGVSDLHLQIGSKVLYLGAGFGRSVSHISDIVGDSGMVYAVEQIPWAGRQLTIMAN 233
Query: 120 DRKNIVPILGDATKPEEYRALVPK-VDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMI-- 176
R NIVPI+ DAT P +YR VP +D+IF D+ + L+ NA +L GG+ +
Sbjct: 234 RRSNIVPIVEDATMPYKYRYEVPACIDIIFADLPPSVLIRALMLNARHFLNPGGHFVAYL 293
Query: 177 -AVKSRSIDVTKEPEQVFREVEKELSEYFEVIERLNLEPYEKDHALFV 223
+ S+ + K+ R + KE + E E + LEP++ +A V
Sbjct: 294 HSPTSQGVVFNKDSFAAERRLLKE--KQLEPKEMVLLEPFKAGYAFVV 339
>gb|AAG21982.1| (AF263383) SKP1 interacting partner 7 [Arabidopsis thaliana]
Length = 100
Score = 80.8 bits (196), Expect = 1e-14
Identities = 44/85 (51%), Positives = 58/85 (67%), Gaps = 1/85 (1%)
Query: 140 LVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFR-EVEK 198
LV VDVIF DVAQP QA+IL NA +LK GG+ +I++K+ ID T E VF+ EV+K
Sbjct: 2 LVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVISIKANCIDSTVAAEAVFQSEVKK 61
Query: 199 ELSEYFEVIERLNLEPYEKDHALFV 223
E F+ E++ LEP+E+DHA V
Sbjct: 62 LQQEQFKPAEQVTLEPFERDHACVV 86
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88239464
Number of Sequences: 2977
Number of extensions: 3715400
Number of successful extensions: 10746
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10636
Number of HSP's gapped (non-prelim): 40
length of query: 227
length of database: 189,106,746
effective HSP length: 54
effective length of query: 173
effective length of database: 156,788,448
effective search space: 27124401504
effective search space used: 27124401504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)