BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2308 51547 51167 -127 !not a gene!
         (127 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71223 hypothetical protein PH0050 - Pyrococcus horikoshii ...   108  4e-23

>pir||G71223 hypothetical protein PH0050 - Pyrococcus horikoshii
           >gi|3256435|dbj|BAA29118.1| (AP000001) 110aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 110
           
 Score =  108 bits (266), Expect = 4e-23
 Identities = 54/98 (55%), Positives = 61/98 (62%)

Query: 30  IIPFSTHLMLPSSSISCPTFNPRNFESLLRPFITRDSATSIFLSKFSSPRYFMANPXXXX 89
           IIPFS H   P  S SCPTFNPRN ESLLRPF+T+DSATSIFL   +SPRYFMA P    
Sbjct: 13  IIPFSFHFTHPLLSSSCPTFNPRNPESLLRPFMTKDSATSIFLCMLNSPRYFMAKPLATL 72

Query: 90  XXXXXXXXXXXXXXXXXXFPIISKLSRLSFSGVSAEVW 127
                              PI+ ++ RLSFSGVSA+VW
Sbjct: 73  STSSFSAFAMNNPVATTALPIMLRVLRLSFSGVSADVW 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27275143
Number of Sequences: 2977
Number of extensions: 695869
Number of successful extensions: 1903
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 1
length of query: 127
length of database: 189,106,746
effective HSP length: 50
effective length of query: 77
effective length of database: 159,182,396
effective search space: 12257044492
effective search space used: 12257044492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)