BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2309 50623 50216 -136 !not a gene!
         (136 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71223 hypothetical protein PH0049 - Pyrococcus horikoshii ...    90  9e-18

>pir||F71223 hypothetical protein PH0049 - Pyrococcus horikoshii
           >gi|3256434|dbj|BAA29117.1| (AP000001) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score = 90.1 bits (220), Expect = 9e-18
 Identities = 48/97 (49%), Positives = 56/97 (57%)

Query: 40  MYGKALPVPFLYAMNXXXXXXXXXXXXXXXXXPTKTIFPSAFSQSSSLNIGKTSPSASPL 99
           MYGKA PVPFLYA+                  PT+TIFPSAFSQSSSL +G TSP ASP 
Sbjct: 1   MYGKASPVPFLYAIKAFAPCSLAFLYASLQSSPTRTIFPSAFSQSSSLKMGITSPFASPE 60

Query: 100 GECAMTKSGESLVVRTXXXXXXXXXXXXHAIGEGKVR 136
           GE A+T+ GE  VV +            H IG+G+VR
Sbjct: 61  GEWAITRRGEFDVVNSFSLNFKLPSTISHPIGDGRVR 97


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36188483
Number of Sequences: 2977
Number of extensions: 999210
Number of successful extensions: 1979
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1978
Number of HSP's gapped (non-prelim): 1
length of query: 136
length of database: 189,106,746
effective HSP length: 56
effective length of query: 80
effective length of database: 155,591,474
effective search space: 12447317920
effective search space used: 12447317920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)