BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2310 (PAB2310) DE:Hypothetical protein
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75191 hypothetical protein PAB2310 - Pyrococcus abyssi (st...   337  3e-92
pir||D71223 hypothetical protein PH0047 - Pyrococcus horikoshii ...   254  3e-67
emb|CAC11282.1| (AL445063) conserved hypothetical protein [Therm...    87  1e-16
pir||D72251 conserved hypothetical protein - Thermotoga maritima...    81  9e-15

>pir||E75191 hypothetical protein PAB2310 - Pyrococcus abyssi (strain Orsay)
           >gi|5457489|emb|CAB48980.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 158
           
 Score =  337 bits (856), Expect = 3e-92
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MKPSTSLRNDIILFTILISQEAFKYFLAQRLDGGTKMYIGHIDDTPEKEVPNAKETTIRW 60
           MKPSTSLRNDIILFTILISQEAFKYFLAQRLDGGTKMYIGHIDDTPEKEVPNAKETTIRW
Sbjct: 1   MKPSTSLRNDIILFTILISQEAFKYFLAQRLDGGTKMYIGHIDDTPEKEVPNAKETTIRW 60

Query: 61  LISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIFVVKGEGYLTKDGKNWFKVVPGSYI 120
           LISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIFVVKGEGYLTKDGKNWFKVVPGSYI
Sbjct: 61  LISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIFVVKGEGYLTKDGKNWFKVVPGSYI 120

Query: 121 YIPPNEPHGYKNEDSESFEFICIIPAKKEAIPEDEWAE 158
           YIPPNEPHGYKNEDSESFEFICIIPAKKEAIPEDEWAE
Sbjct: 121 YIPPNEPHGYKNEDSESFEFICIIPAKKEAIPEDEWAE 158


>pir||D71223 hypothetical protein PH0047 - Pyrococcus horikoshii
           >gi|3256432|dbj|BAA29115.1| (AP000001) 122aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 122
           
 Score =  254 bits (643), Expect = 3e-67
 Identities = 112/122 (91%), Positives = 119/122 (96%)

Query: 37  MYIGHIDDTPEKEVPNAKETTIRWLISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIF 96
           MYIGH+ DTPEK+VPNAK TTIRWLISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIF
Sbjct: 1   MYIGHVKDTPEKDVPNAKGTTIRWLISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIF 60

Query: 97  VVKGEGYLTKDGKNWFKVVPGSYIYIPPNEPHGYKNEDSESFEFICIIPAKKEAIPEDEW 156
           VVKGEGYLTKDGKNWFKVVPGSYIYIPPNEPHGYKNEDSE+FEF+C+IPAK+EAIP+DEW
Sbjct: 61  VVKGEGYLTKDGKNWFKVVPGSYIYIPPNEPHGYKNEDSETFEFVCLIPAKREAIPDDEW 120

Query: 157 AE 158
            E
Sbjct: 121 QE 122


>emb|CAC11282.1| (AL445063) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 128
           
 Score = 87.0 bits (212), Expect = 1e-16
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 5/110 (4%)

Query: 38  YIGHIDDTPEKEVPNAKETTIRWLISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIFV 97
           ++ H +D   +++P     TIRWLI+ + GA+N++MR   +KKG   P H HD+EHEIF+
Sbjct: 16  FVHHSNDA--EDMPMDGGATIRWLITHRDGAENYSMRLITVKKGKSTPHHHHDYEHEIFI 73

Query: 98  VKGEGYLTKDGKNWFKVVPGSYIYIPPNEPHGYKNEDSESFEFICIIPAK 147
           + G   +  DGK  +      +I+IPPN  HG   E  E    IC++P K
Sbjct: 74  ISGRVRVQLDGK-MYVAKADDFIFIPPNVEHGMDAE--EDTRMICVVPIK 120


>pir||D72251 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4982024|gb|AAD36527.1|AE001797_7 (AE001797)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 114
           
 Score = 80.8 bits (196), Expect = 9e-15
 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 43  DDTPEK-EVPNAKETTIRWLISPKVGAKNFAMRYFVIKKGGEIPIHQHDWEHEIFVVKGE 101
           D TP+K      +    R LI  K  A NF MR F ++ GG I  H H WEHEIFV+KG+
Sbjct: 8   DVTPQKISTDKVRGVRKRVLIGLK-DAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGK 66

Query: 102 GYLTKDGKNWFKVVPGSYIYIPPNEPHGYKNEDSESFEFICIIP 145
             + K+ +    V  G YI++ PNE HG++N+     EF+C+IP
Sbjct: 67  LTVLKE-QGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIP 109


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.434 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70881713
Number of Sequences: 2977
Number of extensions: 3217615
Number of successful extensions: 5168
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5164
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 189,106,746
effective HSP length: 49
effective length of query: 109
effective length of database: 159,780,883
effective search space: 17416116247
effective search space used: 17416116247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)