BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2311 (PAB2311) DE:Hypothetical protein
         (113 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75191 hypothetical protein PAB2311 - Pyrococcus abyssi (st...   222  1e-57
pir||C71223 hypothetical protein PH0046 - Pyrococcus horikoshii ...   185  1e-46
gi|11499590 conserved hypothetical protein [Archaeoglobus fulgid...    84  4e-16

>pir||D75191 hypothetical protein PAB2311 - Pyrococcus abyssi (strain Orsay)
           >gi|5457488|emb|CAB48979.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 113
           
 Score =  222 bits (559), Expect = 1e-57
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNL 60
           MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNL
Sbjct: 1   MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNL 60

Query: 61  YRRGLLKRELVQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS 113
           YRRGLLKRELVQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS
Sbjct: 61  YRRGLLKRELVQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS 113


>pir||C71223 hypothetical protein PH0046 - Pyrococcus horikoshii
           >gi|3256431|dbj|BAA29114.1| (AP000001) 113aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 113
           
 Score =  185 bits (465), Expect = 1e-46
 Identities = 91/113 (80%), Positives = 103/113 (90%)

Query: 1   MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNL 60
           MKQEE L+KLE LL+ +GLKKNEI IY LLVEK+RGMRIREIQRELGISERSVR HVL+L
Sbjct: 1   MKQEEKLRKLESLLRTMGLKKNEIMIYNLLVEKKRGMRIREIQRELGISERSVRAHVLSL 60

Query: 61  YRRGLLKRELVQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS 113
           YR+GLLKRELVQ GWLGYIYT VSPLEILQ+I+EH+MKSIEELE++ KNQ+ S
Sbjct: 61  YRKGLLKRELVQKGWLGYIYTAVSPLEILQRIREHIMKSIEELEKEFKNQSGS 113


>gi|11499590 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483192|pir||G69500 conserved hypothetical protein
           AF2008 - Archaeoglobus fulgidus
           >gi|2648529|gb|AAB89246.1| (AE000964) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 106
           
 Score = 84.3 bits (205), Expect = 4e-16
 Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 7   LKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRRGLL 66
           L +L   L+ +  K +++RIY LL+E R GMR+ EI REL +S R VR  +  L +RG +
Sbjct: 5   LGELVKALEKLSFKPSDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKRGFV 63

Query: 67  KRELVQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELER 105
           +RE+V+ GW+GYIY+   P ++L++ K  ++  IE +E+
Sbjct: 64  RREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEIERIEK 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37160090
Number of Sequences: 2977
Number of extensions: 1354687
Number of successful extensions: 6654
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6651
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 189,106,746
effective HSP length: 56
effective length of query: 57
effective length of database: 155,591,474
effective search space: 8868714018
effective search space used: 8868714018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)