BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2312 (PAB2312) DE:TRANSCRIPTIONAL REGULATORY PROTEIN or
LEUCINE-RESPONSIVE-REGULATORY PROTEIN
(155 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75191 transcription regulatory protein or leucine-responsi... 296 6e-80
pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii ... 264 4e-70
gi|11498748 transcriptional regulatory protein, AsnC family [Arc... 89 2e-17
pir||D70981 hypothetical protein Rv3291c - Mycobacterium tubercu... 80 1e-14
pir||T45215 transcription regulator lrp [validated] - Sulfolobus... 75 3e-13
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ... 75 3e-13
gi|11498192 transcriptional regulatory protein, AsnC family [Arc... 73 1e-12
pir||A75106 transcription regulatory protein, asnc family PAB193... 73 2e-12
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 72 4e-12
sp|P96653|LRPB_BACSU TRANSCRIPTIONAL REGULATOR LRPB >gi|7475917|... 71 5e-12
dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus h... 71 5e-12
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 71 6e-12
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s... 71 8e-12
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat... 71 8e-12
emb|CAB92114.1| (AL356334) putative asnC-family transcriptional ... 70 1e-11
emb|CAB60002.1| (AJ238118) leucine-responsive regulator [Rhizobi... 70 1e-11
pir||E71028 probable transcription regulator - Pyrococcus horiko... 70 1e-11
pir||B69026 transcription regulator - Methanobacterium thermoaut... 69 2e-11
pir||A81059 leucine-responsive regulatory protein NMB1650 [impor... 69 3e-11
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h... 68 4e-11
pir||D82983 leucine-responsive regulatory protein PA5308 [import... 68 5e-11
>pir||C75191 transcription regulatory protein or leucine-responsive-regulatory
protein PAB2312 - Pyrococcus abyssi (strain Orsay)
>gi|5457487|emb|CAB48978.1| (AJ248283) TRANSCRIPTIONAL
REGULATORY PROTEIN or LEUCINE-RESPONSIVE-REGULATORY
PROTEIN [Pyrococcus abyssi]
Length = 155
Score = 296 bits (751), Expect = 6e-80
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS
Sbjct: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
Query: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN
Sbjct: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
Query: 121 SFLKDLRKVYLKNLARRMRVSIVLENFKEAGVILK 155
SFLKDLRKVYLKNLARRMRVSIVLENFKEAGVILK
Sbjct: 121 SFLKDLRKVYLKNLARRMRVSIVLENFKEAGVILK 155
>pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii
>gi|3256430|dbj|BAA29113.1| (AP000001) 155aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 155
Score = 264 bits (667), Expect = 4e-70
Identities = 130/155 (83%), Positives = 147/155 (93%)
Query: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
MAGIDEIDE+IVRELRKNSRITLTELG+KVGLTASAVKNRIEKLEKLGVIKGYSAVVD S
Sbjct: 1 MAGIDEIDEVIVRELRKNSRITLTELGRKVGLTASAVKNRIEKLEKLGVIKGYSAVVDPS 60
Query: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
FFGEFLTA+IE+EL+DP++PDL ++L PIL+MRNISDVYKK+GEF L IRGTFRDV+SLN
Sbjct: 61 FFGEFLTAVIEIELIDPDSPDLPRILTPILKMRNISDVYKKTGEFHLVIRGTFRDVESLN 120
Query: 121 SFLKDLRKVYLKNLARRMRVSIVLENFKEAGVILK 155
+FLKDL++ YL+NLARR R+SIVLENFKEAGV LK
Sbjct: 121 TFLKDLKRNYLRNLARRTRISIVLENFKEAGVTLK 155
>gi|11498748 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444108|pir||C69393 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2649438|gb|AAB90095.1| (AE001024) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 149
Score = 89.3 bits (218), Expect = 2e-17
Identities = 49/124 (39%), Positives = 77/124 (61%), Gaps = 3/124 (2%)
Query: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
M IDE+D I+REL+ ++R +L E+ +KVG+ V NRI K+ K+G+IK + VVD S
Sbjct: 1 MVKIDEVDIKILRELQDDARKSLKEISEKVGVAEGTVYNRINKMRKIGLIKKFIPVVDYS 60
Query: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
G L AII + E L ++ + I + RN++ VY +G++ + + F+D DSLN
Sbjct: 61 MLGYDLIAIIG---ITAEGGYLTEIEKEIAKERNVTAVYDVTGDYDIIVVAKFKDRDSLN 117
Query: 121 SFLK 124
+F+K
Sbjct: 118 AFVK 121
>pir||D70981 hypothetical protein Rv3291c - Mycobacterium tuberculosis (strain
H37RV) >gi|1877346|emb|CAB07073.1| (Z92771) hypothetical
protein Rv3291c [Mycobacterium tuberculosis]
Length = 150
Score = 80.0 bits (194), Expect = 1e-14
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+D+ID I+VREL + R TL+EL + GL+ SAV++R+ +LE GV++GYSA ++ G
Sbjct: 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVG 64
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDV---YKKSGEFQLAIRGTFRDVDSLN 120
L+A + + +DP PD A R+ +I +V Y +GE + +L
Sbjct: 65 HLLSAFVAITPLDPSQPDDAPA-----RLEHIEEVESCYSVAGEESYVLLVRVASARALE 119
Query: 121 SFLKDLRKVYLKNLARRMRVSIVLENF 147
L+ +R N+ R R +I+L F
Sbjct: 120 DLLQRIRTT--ANV--RTRSTIILNTF 142
>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
>gi|2760520|emb|CAA73351.1| (Y12821)
leucine-responsive-regulatory protein [Sulfolobus
acidocaldarius]
Length = 155
Score = 75.3 bits (182), Expect = 3e-13
Identities = 46/147 (31%), Positives = 87/147 (58%), Gaps = 8/147 (5%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
ID ID+ ++ EL K+SRI+L L +++ ++ + + NR+ +L + GV+KG++A++D S G
Sbjct: 9 IDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDYSKLG 68
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
+T+I+ +++ + + + + + + N+ VY GE+ + + FR ++ L++F+
Sbjct: 69 YPVTSILMIKV---DGKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTFI 125
Query: 124 KDLRKVYLKN-LARRMRVSIVLENFKE 149
K L LKN R SIVL KE
Sbjct: 126 KSL----LKNPKIERTYTSIVLNVVKE 148
>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory
protein. [Streptomyces coelicolor A3(2)]
Length = 165
Score = 75.3 bits (182), Expect = 3e-13
Identities = 38/78 (48%), Positives = 54/78 (68%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
++E+D IV+ L K+ R++ T+LGK GL+ SAV R+ +LE+ GVI+GY+AVVD G
Sbjct: 20 MEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG 79
Query: 64 EFLTAIIEVELVDPEAPD 81
+TA I V+ DP APD
Sbjct: 80 LPMTAFISVKPFDPSAPD 97
>gi|11498192 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444088|pir||H69322 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650037|gb|AAB90654.1| (AE001064) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 145
Score = 73.4 bits (177), Expect = 1e-12
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+DE D +I+ EL K+SR TL+EL + + ++ S++ R++KLEK GVI+ Y+AV++ F
Sbjct: 1 MDEKDMLILSELVKDSRKTLSELAEMLDMSVSSIHKRVKKLEKEGVIERYTAVINPDVF- 59
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSL 119
+ +TA + + +PE KV I M N+ +VYK G F + + D+D +
Sbjct: 60 DTVTAFLLISAENPE-----KVFNNIKAMDNVVEVYKALGNFNMIAKVRSSDLDKI 110
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 73.0 bits (176), Expect = 2e-12
Identities = 38/120 (31%), Positives = 71/120 (58%), Gaps = 3/120 (2%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+DEID I++ L+K+ + L E+ K GL S + RI+KL + GVI+ ++A+V+ G
Sbjct: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
+ A I L+ +A A+V +++ I +VY+ +G++ + ++ ++ + LNSFL
Sbjct: 65 YSMLAFI---LIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 71.8 bits (173), Expect = 4e-12
Identities = 40/146 (27%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+DE+D+ I+ L K+SRI+ E+ K++ + + NRI+KLE+ GVI+G++ ++ G
Sbjct: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
LTAI+ ++ + ++ ++ I + + + VY +GE+ + + F++ + +N F+
Sbjct: 62 YDLTAIMGIKAQGKKIREIERI---IAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFV 118
Query: 124 KDLRKVYLKNLARRMRVSIVLENFKE 149
K + + + + +VLE KE
Sbjct: 119 KGVLSI---DGVEKTNTHVVLEVVKE 141
>sp|P96653|LRPB_BACSU TRANSCRIPTIONAL REGULATOR LRPB >gi|7475917|pir||E69653
transcription regulator of glyA trans lrpB - Bacillus
subtilis >gi|1881315|dbj|BAA19342.1| (AB001488) PROBABLE
TRANSCRIPTIONAL REGULATOR, SIMILAR TO REGULATORY PROTEIN
ASNC AND LRP. [Bacillus subtilis]
>gi|2632806|emb|CAB12313.1| (Z99106) transcriptional
regulator (Lrp/AsnC family) [Bacillus subtilis]
Length = 149
Score = 71.4 bits (172), Expect = 5e-12
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
ID ID I++ L KN+RI E+G+K+ +T AV NRI+K+E G+IK YS VVD G
Sbjct: 3 IDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMG 62
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
TA + + DL K I IS+ ++ SG+ ++ T + LN L
Sbjct: 63 FSFTAFVFFFMNAYMHDDLLKF---IATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLL 119
Query: 124 KDLRK 128
DL K
Sbjct: 120 NDLLK 124
>dbj|BAB04142.1| (AP001508) transcriptional regulator [Bacillus halodurans]
Length = 144
Score = 71.4 bits (172), Expect = 5e-12
Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
IDEID+ I+ EL K+ RI++ ELG K+ +++ AV+ R++++E G+IK Y+ +D + G
Sbjct: 3 IDEIDKQILNELMKDGRISMKELGTKINMSSPAVRERVKQMESYGIIKNYTVAIDLTKVG 62
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
++ +IE + E ++ Q + M N+ ++ +G I+ D+ + +F+
Sbjct: 63 YPVSCLIEATVKHGE---YSRFKQVVEGMNNVEFCHRIAGRACFMIKAYMEDLSKVEAFI 119
Query: 124 KDL 126
+ L
Sbjct: 120 EQL 122
>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
>gi|2129315|pir||H64318 transcription regulator homolog
- Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
(U67472) transcriptional regulator, putative
[Methanococcus jannaschii]
Length = 148
Score = 71.0 bits (171), Expect = 6e-12
Identities = 39/146 (26%), Positives = 81/146 (54%), Gaps = 5/146 (3%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+D ID I+R L N+R + E+G+++G++ V+NR+++L + G+I G+ A ++ G
Sbjct: 2 LDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNLG 61
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
+ AI+ + + + + + L + + I ++Y+ +GE+ +D++SL FL
Sbjct: 62 FEVVAILGLYI---KPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFL 118
Query: 124 KDLRKVYLKNLARRMRVSIVLENFKE 149
+ K+Y +V++VL FK+
Sbjct: 119 AE--KIYPLVNVNGCKVTLVLRTFKD 142
>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
Length = 157
Score = 70.6 bits (170), Expect = 8e-12
Identities = 48/147 (32%), Positives = 81/147 (54%), Gaps = 8/147 (5%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+D ID ++ EL +++R +L L +++ ++ + + NR+ ++ + G+IK + A++D S G
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
LT II ++ + L + + I N++ VY GE+ + I FR V+ L+SFL
Sbjct: 71 FALTGIIMAKV---DGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFL 127
Query: 124 KDLRKVYLKN-LARRMRVSIVLENFKE 149
K L LKN R SIVL KE
Sbjct: 128 KQL----LKNPKIERTYTSIVLNVVKE 150
>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
[Sulfolobus solfataricus]
Length = 157
Score = 70.6 bits (170), Expect = 8e-12
Identities = 48/147 (32%), Positives = 81/147 (54%), Gaps = 8/147 (5%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+D ID ++ EL +++R +L L +++ ++ + + NR+ ++ + G+IK + A++D S G
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
LT II ++ + L + + I N++ VY GE+ + I FR V+ L+SFL
Sbjct: 71 FALTGIIMAKV---DGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFL 127
Query: 124 KDLRKVYLKN-LARRMRVSIVLENFKE 149
K L LKN R SIVL KE
Sbjct: 128 KQL----LKNPKIERTYTSIVLNVVKE 150
>emb|CAB92114.1| (AL356334) putative asnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 167
Score = 70.2 bits (169), Expect = 1e-11
Identities = 48/128 (37%), Positives = 71/128 (54%), Gaps = 5/128 (3%)
Query: 17 KNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFGEFLTAIIEVELVD 76
+N R + ELG+ VGL+ +V +RI +LE GVI GY A VD++ G +TA+I V L D
Sbjct: 29 ENGRASYAELGRLVGLSGPSVTDRINRLEAAGVITGYRATVDSASLGLGVTALIGVSLSD 88
Query: 77 PEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFLKDLRKVYLKNLAR 136
A D V Q + +R I D + +G+ ++ DVD L S ++ L K ++
Sbjct: 89 --AADHEDVAQRLKELREIEDCWFIAGDDSYMLKVRAADVDGLESIIRRLSGT--KGVS- 143
Query: 137 RMRVSIVL 144
R R +IVL
Sbjct: 144 RTRTTIVL 151
>emb|CAB60002.1| (AJ238118) leucine-responsive regulator [Rhizobium leguminosarum]
Length = 153
Score = 70.2 bits (169), Expect = 1e-11
Identities = 42/125 (33%), Positives = 65/125 (51%)
Query: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
MA +D ID I+R L+ N+RIT EL +++GL+ SA R++ LE+ GVI GY A +
Sbjct: 1 MADLDTIDLAILRVLQANARITNAELAERIGLSPSACSRRLDILERSGVIGGYHARLSHK 60
Query: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
+ AI+ + L A LA+ + N+ Y SGE+ +R RD++
Sbjct: 61 ALDYKMIAIVHISLSGQFAKTLAEFEAAVKLCPNVLVCYLMSGEYDYILRVAARDLEDYE 120
Query: 121 SFLKD 125
+D
Sbjct: 121 RIHRD 125
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 69.9 bits (168), Expect = 1e-11
Identities = 37/120 (30%), Positives = 69/120 (56%), Gaps = 3/120 (2%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+DEID+ I++ L+ + + L E+ K GL S + RI KL + GVIK ++A++D G
Sbjct: 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
+ A I LV +A ++V + + I +VY+ +G++ + ++ ++ + LN+FL
Sbjct: 65 YSMLAFI---LVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFL 121
>pir||B69026 transcription regulator - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622301|gb|AAB85682.1| (AE000887)
transcriptional regulator [Methanobacterium
thermoautotrophicum]
Length = 161
Score = 69.5 bits (167), Expect = 2e-11
Identities = 43/123 (34%), Positives = 67/123 (53%), Gaps = 3/123 (2%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
ID+ID I+ L ++ R++ + + + ++ V NR+EKL K GVIK + ++D S G
Sbjct: 12 IDDIDRKIIDLLNEDGRMSYRNISRILDVSVGTVHNRVEKLVKKGVIKKFVPIIDHSKLG 71
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
LTAII V++ + L +N+ VY +GEF + G FRD L+SF+
Sbjct: 72 YKLTAIIGVKV---KGGVLRNWETRTAYHKNVLAVYDVTGEFDAILIGKFRDTGELDSFI 128
Query: 124 KDL 126
K L
Sbjct: 129 KGL 131
>pir||A81059 leucine-responsive regulatory protein NMB1650 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226901|gb|AAF41999.1| (AE002515) leucine-responsive
regulatory protein [Neisseria meningitidis MC58]
Length = 154
Score = 68.7 bits (165), Expect = 3e-11
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 1 MAGIDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTS 60
M +D+ID I++ L++N+RI +TEL +KVGL+ + V R+ +LE+ I GY A ++
Sbjct: 1 MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPH 60
Query: 61 FFGEFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLN 120
G+ L +E++L + +L++ I + + SGE+ I+ D+ +
Sbjct: 61 LLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRLPDMSAYR 120
Query: 121 SFLKDLRKVYLKNLARRMRVSIVLENFKEAGVI 153
L ++ + A R +V+E KE V+
Sbjct: 121 DMLGNI--LLQLPAASESRSYVVMEEVKENPVL 151
>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
Length = 149
Score = 68.3 bits (164), Expect = 4e-11
Identities = 41/145 (28%), Positives = 77/145 (52%), Gaps = 5/145 (3%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
ID D+ I+ L +N R++ ++ K++GL+ A++ RI +L++ GVI+ +S V+++ G
Sbjct: 3 IDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDKVG 62
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
+ ++A E VD E L KV + + ++ Y+ +G L + D D L F+
Sbjct: 63 KKVSAFFE---VDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFI 119
Query: 124 KDLRKVYLKNLARRMRVSIVLENFK 148
+ ++Y R+ I+L FK
Sbjct: 120 NE--ELYALQGITRVESHILLRRFK 142
>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
leucine-responsive regulatory protein [Pseudomonas
aeruginosa]
Length = 162
Score = 67.9 bits (163), Expect = 5e-11
Identities = 39/147 (26%), Positives = 75/147 (50%), Gaps = 2/147 (1%)
Query: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
+D+ID I+R L++ RI+ TELG++VGL+ + R+ +LE+ G+I GY A ++
Sbjct: 11 LDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLK 70
Query: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
L +E+ L + + +L++ ++ + + SG F ++ ++ S L
Sbjct: 71 ASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLL 130
Query: 124 KDLRKVYLKNLARRMRVSIVLENFKEA 150
D+ + R + IV+E KE+
Sbjct: 131 GDI--LLKLPHVRESKSYIVMEEVKES 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.368
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48543085
Number of Sequences: 2977
Number of extensions: 1805058
Number of successful extensions: 6105
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6090
Number of HSP's gapped (non-prelim): 21
length of query: 155
length of database: 189,106,746
effective HSP length: 58
effective length of query: 97
effective length of database: 154,394,500
effective search space: 14976266500
effective search space used: 14976266500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)