BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2314 (PAB2314) DE:Hypothetical protein
(199 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75191 hypothetical protein PAB2314 - Pyrococcus abyssi (st... 400 e-111
pir||H71222 hypothetical protein PH0043 - Pyrococcus horikoshii ... 373 e-103
gi|11497822 A. fulgidus predicted coding region AF0206 [Archaeog... 140 1e-32
pir||B69042 conserved hypothetical protein MTH1318 - Methanobact... 129 2e-29
gb|AAK40632.1| Conserved hypothetical protein [Sulfolobus solfat... 100 1e-20
pir||C72739 hypothetical protein APE0445 - Aeropyrum pernix (str... 98 1e-19
emb|CAC12058.1| (AL445065) conserved hypothetical protein [Therm... 77 1e-13
>pir||A75191 hypothetical protein PAB2314 - Pyrococcus abyssi (strain Orsay)
>gi|5457485|emb|CAB48976.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 199
Score = 400 bits (1016), Expect = e-111
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MEEGEERKKTIKNGDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEIS 60
MEEGEERKKTIKNGDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEIS
Sbjct: 1 MEEGEERKKTIKNGDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEIS 60
Query: 61 LEPASSVPPIPKKGDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDG 120
LEPASSVPPIPKKGDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDG
Sbjct: 61 LEPASSVPPIPKKGDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDG 120
Query: 121 FVEDLRNEFKIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCP 180
FVEDLRNEFKIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCP
Sbjct: 121 FVEDLRNEFKIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCP 180
Query: 181 RCGNVETRKISTLYRKVKL 199
RCGNVETRKISTLYRKVKL
Sbjct: 181 RCGNVETRKISTLYRKVKL 199
>pir||H71222 hypothetical protein PH0043 - Pyrococcus horikoshii
>gi|3256428|dbj|BAA29111.1| (AP000001) 200aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 200
Score = 373 bits (948), Expect = e-103
Identities = 182/200 (91%), Positives = 193/200 (96%), Gaps = 1/200 (0%)
Query: 1 MEEGEERKKTIKNGDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEIS 60
MEE ERKKTIK+GDFVLPGDYLGVIEEYLPG+GVI EDGNLYS RAGWV+INKDK+EIS
Sbjct: 1 MEENSERKKTIKDGDFVLPGDYLGVIEEYLPGDGVIAEDGNLYSTRAGWVRINKDKIEIS 60
Query: 61 LEPASSVPPIPKKGDIVYARVIDVKQQAVLLRMIKIEGQE-NREIATSKLAGIHISQVKD 119
LEPAS VPP+PKKGDIVYARV++VKQQAVLL+MIKIEGQE NREIATSKLAGIHISQVKD
Sbjct: 61 LEPASKVPPVPKKGDIVYARVLEVKQQAVLLKMIKIEGQEGNREIATSKLAGIHISQVKD 120
Query: 120 GFVEDLRNEFKIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVC 179
GFVEDLRNEFK+GDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVC
Sbjct: 121 GFVEDLRNEFKVGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVC 180
Query: 180 PRCGNVETRKISTLYRKVKL 199
P+CGNVETRKIS LYRKVK+
Sbjct: 181 PKCGNVETRKISNLYRKVKI 200
>gi|11497822 A. fulgidus predicted coding region AF0206 [Archaeoglobus fulgidus]
>gi|7429751|pir||F69275 hypothetical protein AF0206 -
Archaeoglobus fulgidus >gi|2650447|gb|AAB91036.1|
(AE001092) A. fulgidus predicted coding region AF0206
[Archaeoglobus fulgidus]
Length = 179
Score = 140 bits (350), Expect = 1e-32
Identities = 79/183 (43%), Positives = 117/183 (63%), Gaps = 11/183 (6%)
Query: 16 FVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEISLEPASSVPPIPK--K 73
FV+PGD +G EEY+ GEGV E G L++A AG + I KD+V S+ PIP+ K
Sbjct: 3 FVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAGKLII-KDRVA----KVESISPIPEIVK 57
Query: 74 GDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDGFVEDLRNEFKIGD 133
GD+V RV+D++ L+ + +G ENR + + +H+S V +G+V+++ D
Sbjct: 58 GDVVLGRVVDLRNSIALIEVSSKKG-ENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLD 116
Query: 134 IVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCPRCGNVETRKISTL 193
I++ARVI D ++L+TK+ ++GV+ ALCS C+T +VR+G+ L CP CG VE RKIST
Sbjct: 117 ILKARVIGDN---LRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPECGRVEKRKISTD 173
Query: 194 YRK 196
Y K
Sbjct: 174 YGK 176
>pir||B69042 conserved hypothetical protein MTH1318 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622423|gb|AAB85796.1| (AE000895) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 189
Score = 129 bits (321), Expect = 2e-29
Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
Query: 11 IKNGDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEISLEPASSVPPI 70
+K+GD V PGD+L V EE LP EG EDG + S G V + I + + PP
Sbjct: 3 VKSGDMVFPGDFLAVSEEVLPSEGTYDEDGKIKSLVVGEVSRDDRNKSIKVISKLNTPPT 62
Query: 71 PKKGDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDGFVEDLRNEFK 130
K+G V VIDV+ Q L+R+ I+G R +AT + G+H+SQ + G++ L + F+
Sbjct: 63 LKRGSRVIGEVIDVRGQRALVRIHSIKG-NRRALATYFVGGVHVSQARKGYLSKLTDAFR 121
Query: 131 IGDIVRARVI-ADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKG-NQLVCPRCGNVETR 188
IGDIV ARV I L T DLGV+ A+C++CR + G +++ CP C N E R
Sbjct: 122 IGDIVEARVTKIMGLDGIDLQTSGRDLGVIKAMCTRCRHFMEVNGRDEVRCPNCENREKR 181
Query: 189 KISTLY 194
K+S Y
Sbjct: 182 KLSVNY 187
>gb|AAK40632.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 189
Score = 100 bits (247), Expect = 1e-20
Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 10/183 (5%)
Query: 14 GDFVLPGDYLGVIEEYLPGEGVIVEDGNLYSARAGWV---KINKDKVEISLEPASSVPPI 70
G+ LPG+ L VIEE++ G+G ++G + +A G + +N+ + + +
Sbjct: 5 GELTLPGEELAVIEEFMTGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKI--IFQH 62
Query: 71 PKKGDIVYARVIDVKQQAVLLRMIKIEGQENREIATSKLAGIHISQVKDGFVEDLRNEFK 130
KK V V +K+ + L + I G E R +A+ A +HISQ+ + + ++ + K
Sbjct: 63 LKKAKYVIGIVNSIKEDSAL---VSIVGIEERGLASPISAYLHISQISNKKINNVTDAIK 119
Query: 131 IGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKG-NQLVCPRCGNVETRK 189
IGD+++A++++ P+ LT K DLGV+YA CS+C L+++ N L C RCGN+E RK
Sbjct: 120 IGDVIKAKLLS-YTFPLALTIKMKDLGVIYARCSRCGYLLIKQDENNLKCQRCGNIEQRK 178
Query: 190 IST 192
I +
Sbjct: 179 IGS 181
>pir||C72739 hypothetical protein APE0445 - Aeropyrum pernix (strain K1)
>gi|5104091|dbj|BAA79407.1| (AP000059) 215aa long
hypothetical protein [Aeropyrum pernix]
Length = 215
Score = 97.5 bits (239), Expect = 1e-19
Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 17 VLPGDYLGVIEEYLPGEGVIVE--DGNLYSARAGWVKINKDKVEISLEPASSVPPIPKKG 74
V+PGD L IEE+LPGEGV V+ G + +A G ++ + ++P P P G
Sbjct: 14 VMPGDVLATIEEFLPGEGVYVDPVKGFIRAAAPGVAYLDMSRRIAYVKPHKK-PQTPGPG 72
Query: 75 DIVYARVIDVKQQAVLLRMIKIEGQENR-----EIATSKLAGIHISQVKDGFVEDLRNEF 129
V A V V+ V+ + + + E+ + A I ISQ+ D +++++ + +
Sbjct: 73 SEVAALVTGVRGDLVVAEVYGVVRLSPKPAWLYELPSPYSAAIPISQIADEYIKNIEDYY 132
Query: 130 KIGDIVRARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPL-VRKGNQLVCPRCGNVETR 188
++GD + A++++ P L+T +P GVVYA+CS+C + + + CP+CGNVE R
Sbjct: 133 RMGDWILAKIVS-RTPPFTLSTVEPRYGVVYAICSRCGAVMEFQSERSMKCPKCGNVEKR 191
Query: 189 KIS 191
K+S
Sbjct: 192 KVS 194
>emb|CAC12058.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 204
Score = 77.3 bits (187), Expect = 1e-13
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 19 PGDYLGVIEEYLPGEGVIVEDGNLYSARAGWVKINKDKVEISLEPASSVPPIPKKGDIVY 78
PGD + EEYLPG ++G + + + G + + + IS++ + +KGD+VY
Sbjct: 10 PGDIIATTEEYLPGRNTEEKNGEIVATKFGNIVRDDINLMISVDTGKKEFFL-RKGDVVY 68
Query: 79 ARVIDVKQQAVLLRMIKI--EGQENREIATSKLAGIHISQVKDGFVEDLRNEF-KIGDIV 135
+VI ++R++ + G +E+ Q+ G +++F +GD++
Sbjct: 69 GQVIKNDAHRYIVRVVGVFQRGTGLKEVDEEM-------QLSFGMSRRPQSDFVAVGDLI 121
Query: 136 RARVIADEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCPRCGNVETRKISTLYR 195
R V+ P +++ GV+ A+CS+CR PLV+K L C C E RKI+ Y
Sbjct: 122 RGYVVRTGDMP-EISINGNHYGVISAVCSRCRQPLVKKNITLYCENCQRTEIRKIADDYG 180
Query: 196 KVKL 199
V +
Sbjct: 181 SVDI 184
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75203655
Number of Sequences: 2977
Number of extensions: 3073618
Number of successful extensions: 7858
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7841
Number of HSP's gapped (non-prelim): 7
length of query: 199
length of database: 189,106,746
effective HSP length: 55
effective length of query: 144
effective length of database: 156,189,961
effective search space: 22491354384
effective search space used: 22491354384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)