BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2315 (PAB2315) DE:Hypothetical protein
         (219 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75190 hypothetical protein PAB2315 - Pyrococcus abyssi (st...   430  e-120
pir||G71222 hypothetical protein PH0042 - Pyrococcus horikoshii ...   367  e-101

>pir||H75190 hypothetical protein PAB2315 - Pyrococcus abyssi (strain Orsay)
           >gi|5457484|emb|CAB48975.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 219
           
 Score =  430 bits (1095), Expect = e-120
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MRAKKVIVLHVRDDVEKEEFMKEVQRLNLSAFVYIHGKLNSLKVNVQGTKDEIREAIRAI 60
           MRAKKVIVLHVRDDVEKEEFMKEVQRLNLSAFVYIHGKLNSLKVNVQGTKDEIREAIRAI
Sbjct: 1   MRAKKVIVLHVRDDVEKEEFMKEVQRLNLSAFVYIHGKLNSLKVNVQGTKDEIREAIRAI 60

Query: 61  REAHKRVRGRLYPDRQGLYTYYPDDIFREASANVSLQILLRTLELLGERVELKDEYLKTS 120
           REAHKRVRGRLYPDRQGLYTYYPDDIFREASANVSLQILLRTLELLGERVELKDEYLKTS
Sbjct: 61  REAHKRVRGRLYPDRQGLYTYYPDDIFREASANVSLQILLRTLELLGERVELKDEYLKTS 120

Query: 121 MPWKEIVELVKRLSDVIAEISLQTTRQIREVVAPVSIVYNLDPEEVLEMLVDLGLAEYKE 180
           MPWKEIVELVKRLSDVIAEISLQTTRQIREVVAPVSIVYNLDPEEVLEMLVDLGLAEYKE
Sbjct: 121 MPWKEIVELVKRLSDVIAEISLQTTRQIREVVAPVSIVYNLDPEEVLEMLVDLGLAEYKE 180

Query: 181 DKFKYELIKNKEQALELLLKHLEGEGDEDRGDQEGAGPA 219
           DKFKYELIKNKEQALELLLKHLEGEGDEDRGDQEGAGPA
Sbjct: 181 DKFKYELIKNKEQALELLLKHLEGEGDEDRGDQEGAGPA 219


>pir||G71222 hypothetical protein PH0042 - Pyrococcus horikoshii
           >gi|3256427|dbj|BAA29110.1| (AP000001) 209aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 209
           
 Score =  367 bits (931), Expect = e-101
 Identities = 176/209 (84%), Positives = 202/209 (96%)

Query: 1   MRAKKVIVLHVRDDVEKEEFMKEVQRLNLSAFVYIHGKLNSLKVNVQGTKDEIREAIRAI 60
           MRAKKVIVLHV+DDVEKEEFMKE+QR+NLSAFVYIHGKLNSLKVN+QGTKDEIREAIRAI
Sbjct: 1   MRAKKVIVLHVKDDVEKEEFMKEIQRMNLSAFVYIHGKLNSLKVNIQGTKDEIREAIRAI 60

Query: 61  REAHKRVRGRLYPDRQGLYTYYPDDIFREASANVSLQILLRTLELLGERVELKDEYLKTS 120
           REAHKRVRGRLYPDRQGLYTYYP+DIF+EASANVS+ IL++ LEL+GERVE+K++Y++TS
Sbjct: 61  REAHKRVRGRLYPDRQGLYTYYPEDIFKEASANVSVPILIKALELMGERVEVKEDYIRTS 120

Query: 121 MPWKEIVELVKRLSDVIAEISLQTTRQIREVVAPVSIVYNLDPEEVLEMLVDLGLAEYKE 180
           MPWKE+VELV+RLS+V AEI+LQTTRQIREVV PVS+VY+LDPE++L +LVDLG+AEYKE
Sbjct: 121 MPWKEMVELVRRLSEVTAEIALQTTRQIREVVVPVSVVYDLDPEDLLNILVDLGVAEYKE 180

Query: 181 DKFKYELIKNKEQALELLLKHLEGEGDED 209
           DKFKYELIKNKEQALE LL HL+GEGDED
Sbjct: 181 DKFKYELIKNKEQALETLLNHLKGEGDED 209


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.372 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74791754
Number of Sequences: 2977
Number of extensions: 2935061
Number of successful extensions: 11773
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11771
Number of HSP's gapped (non-prelim): 2
length of query: 219
length of database: 189,106,746
effective HSP length: 59
effective length of query: 160
effective length of database: 153,796,013
effective search space: 24607362080
effective search space used: 24607362080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)