BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2316 (rpoL) DE:DNA-directed RNA polymerase, subunit L (rpoL)
(95 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V2M4|RPOL_PYRAB DNA-DIRECTED RNA POLYMERASE SUBUNIT L >gi|7... 193 3e-49
sp|P57671|RPOL_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT L 178 2e-44
sp|P46217|RPOL_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT L >gi|7... 66 7e-11
>sp|Q9V2M4|RPOL_PYRAB DNA-DIRECTED RNA POLYMERASE SUBUNIT L >gi|7514798|pir||G75190
DNA-directed RNA polymerase, chain L (rpol) PAB2316 -
Pyrococcus abyssi (strain Orsay)
>gi|5457483|emb|CAB48974.1| (AJ248283) DNA-directed RNA
polymerase, subunit L (rpoL) [Pyrococcus abyssi]
Length = 95
Score = 193 bits (486), Expect = 3e-49
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MKIEVIKKEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVV 60
MKIEVIKKEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVV
Sbjct: 1 MKIEVIKKEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVV 60
Query: 61 TDGKITPEKALEEAAKKIFDRAKEVLDAWEKAIKG 95
TDGKITPEKALEEAAKKIFDRAKEVLDAWEKAIKG
Sbjct: 61 TDGKITPEKALEEAAKKIFDRAKEVLDAWEKAIKG 95
>sp|P57671|RPOL_PYRHO DNA-DIRECTED RNA POLYMERASE SUBUNIT L
Length = 95
Score = 178 bits (446), Expect = 2e-44
Identities = 84/94 (89%), Positives = 91/94 (96%)
Query: 1 MKIEVIKKEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVV 60
MKIEVIKKE+D+LEFYLEGEDHTFANLLTE LRE+PHVKFVAYTIEHPI MARKPRFRVV
Sbjct: 1 MKIEVIKKEEDMLEFYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVV 60
Query: 61 TDGKITPEKALEEAAKKIFDRAKEVLDAWEKAIK 94
TDGK+TPEKALEEAA+KIF+RAKEVLDAWEK +K
Sbjct: 61 TDGKVTPEKALEEAARKIFNRAKEVLDAWEKVVK 94
>sp|P46217|RPOL_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT L >gi|7447311|pir||S78047
DNA-directed RNA polymerase (EC 2.7.7.6) chain L -
Sulfolobus acidocaldarius >gi|912481|emb|CAA50072.1|
(X70805) RNA polymerase subunit L [Sulfolobus
acidocaldarius]
Length = 90
Score = 66.3 bits (159), Expect = 7e-11
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MKIEVIKKEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVV 60
M+I+VIK+EQ+ LE ++GE+HT NLL L + P VKF AY++ HP++ + +++
Sbjct: 1 MEIKVIKEEQNYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITS--ITIKIL 58
Query: 61 TDGKITPEKALEEAAKKIFDRAKEVLDAWEK 91
TDG I+ +AL +A + + A +D +K
Sbjct: 59 TDGSISAREALIKAIELAENYANLFIDEVKK 89
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32959515
Number of Sequences: 2977
Number of extensions: 1110745
Number of successful extensions: 3384
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3382
Number of HSP's gapped (non-prelim): 3
length of query: 95
length of database: 189,106,746
effective HSP length: 53
effective length of query: 42
effective length of database: 157,386,935
effective search space: 6610251270
effective search space used: 6610251270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)