BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2319 (PAB2319) DE:Hypothetical protein
(143 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75190 hypothetical protein PAB2319 - Pyrococcus abyssi (st... 287 3e-77
pir||C71145 hypothetical protein PH0374 - Pyrococcus horikoshii ... 203 8e-52
pir||H69014 conserved hypothetical protein MTH1111 - Methanobact... 111 3e-24
gb|AAB99339.1| (U67573) conserved hypothetical protein [Methanoc... 107 6e-23
pir||A64466 hypothetical protein MJ1330 - Methanococcus jannaschii 104 5e-22
>pir||B75190 hypothetical protein PAB2319 - Pyrococcus abyssi (strain Orsay)
>gi|5457478|emb|CAB48969.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 143
Score = 287 bits (728), Expect = 3e-77
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MNAEEIIGKLEGYGVTLESMLETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLS 60
MNAEEIIGKLEGYGVTLESMLETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLS
Sbjct: 1 MNAEEIIGKLEGYGVTLESMLETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLS 60
Query: 61 AALLLEERFEAEVEGDPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLPPF 120
AALLLEERFEAEVEGDPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLPPF
Sbjct: 61 AALLLEERFEAEVEGDPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLPPF 120
Query: 121 LDDAVGGFIAGCMTRLFEGDQSE 143
LDDAVGGFIAGCMTRLFEGDQSE
Sbjct: 121 LDDAVGGFIAGCMTRLFEGDQSE 143
>pir||C71145 hypothetical protein PH0374 - Pyrococcus horikoshii
>gi|3256765|dbj|BAA29448.1| (AP000002) 147aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 147
Score = 203 bits (511), Expect = 8e-52
Identities = 97/136 (71%), Positives = 121/136 (88%), Gaps = 4/136 (2%)
Query: 5 EIIGKLEGYGVTLESMLETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLSAALL 64
E++ KLE G+TLE ML+ A+ELY+G ++ R V+E+L+ IMLHYL DVNVQALL++A+L
Sbjct: 4 ELLKKLEAKGITLEKMLDAALELYIGGEKGR--VREKLREIMLHYLEDVNVQALLTSAIL 61
Query: 65 LEERFEAEVEGDPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLPPFLDDA 124
LEE F+ VEGDPVNL+ADELIGIDIAEYIGGK+GLFNFFYYDT+KPGIL++LPPFLDDA
Sbjct: 62 LEENFK--VEGDPVNLIADELIGIDIAEYIGGKLGLFNFFYYDTKKPGILSELPPFLDDA 119
Query: 125 VGGFIAGCMTRLFEGD 140
+GGFIAGCM+RLF+ +
Sbjct: 120 IGGFIAGCMSRLFQDE 135
>pir||H69014 conserved hypothetical protein MTH1111 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622213|gb|AAB85600.1| (AE000881) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 273
Score = 111 bits (276), Expect = 3e-24
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Query: 10 LEGYGVTLESMLETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLSAALLLEERF 69
LE GVT++ M++ M+L +G D E +++RL+ + L D+NV+ALL+AAL LE
Sbjct: 140 LEARGVTIDGMVDAGMDLVVGVDVTAE-LRDRLRSEIQRALGDLNVRALLAAALHLEGDI 198
Query: 70 E------AEVEGDPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLPPFLDD 123
E ++ DP L +DE++G+ +A + G +FNF YD KPGIL +L P +DD
Sbjct: 199 ENLRILGVDLRDDPAFLYSDEVLGMAVANQVAGTKAIFNFKRYDEEKPGILGELGPMVDD 258
Query: 124 AVGGFIAGCMTRLFE 138
AV G IAGCM+RLFE
Sbjct: 259 AVAGLIAGCMSRLFE 273
>gb|AAB99339.1| (U67573) conserved hypothetical protein [Methanococcus jannaschii]
Length = 127
Score = 107 bits (265), Expect = 6e-23
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 21 LETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLSAALLLEERFEA-----EVEG 75
++ M+LY+G +E+R+ VKE+LK I+L L++ NV LL AA+LL+ A
Sbjct: 1 MDAGMDLYIGSNEERDRVKEKLKEILLKQLSNPNVSTLLIAAILLDNEGRANNLPFNYNE 60
Query: 76 DPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLP----PFLDDAVGGFIAG 131
DP + DE+IG+ IA I G +FNF +YD +KPGI+ +L FLDDA+ G +AG
Sbjct: 61 DPNYVYVDEVIGLAIANEIAGTKAIFNFRFYDAKKPGIIGELDRKGFMFLDDAIAGLLAG 120
Query: 132 CMTRLFE 138
CM+++FE
Sbjct: 121 CMSKVFE 127
>pir||A64466 hypothetical protein MJ1330 - Methanococcus jannaschii
Length = 127
Score = 104 bits (257), Expect = 5e-22
Identities = 54/127 (42%), Positives = 79/127 (61%), Gaps = 9/127 (7%)
Query: 21 LETAMELYLGDDEKRENVKERLKRIMLHYLNDVNVQALLSAALLLEERFEA-----EVEG 75
++ M+LY+G +E+R+ VKE+LK I L L++ NV L AA+LL+ A
Sbjct: 1 MDAGMDLYIGSNEERDRVKEKLKEIXLKQLSNPNVSTXLIAAILLDNEGRANNLPFNYNE 60
Query: 76 DPVNLVADELIGIDIAEYIGGKMGLFNFFYYDTRKPGILAKLP----PFLDDAVGGFIAG 131
DP + DE+IG+ IA I G +FNF +YD +KPGI+ +L FLDDA+ G +AG
Sbjct: 61 DPNYVYVDEVIGLAIANEIAGTKAIFNFRFYDAKKPGIIGELDRKGFMFLDDAIAGLLAG 120
Query: 132 CMTRLFE 138
CM+++FE
Sbjct: 121 CMSKVFE 127
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.143 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52121765
Number of Sequences: 2977
Number of extensions: 2061565
Number of successful extensions: 5371
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5360
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 189,106,746
effective HSP length: 53
effective length of query: 90
effective length of database: 157,386,935
effective search space: 14164824150
effective search space used: 14164824150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)