BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2321 (PAB2321) DE:Hypothetical protein
(249 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75189 hypothetical protein PAB2321 - Pyrococcus abyssi (st... 501 e-141
gi|10803614 ORF H0745 [Halobacterium sp. NRC-1] >gi|10803689|ref... 163 2e-39
pir||G71144 hypothetical protein PH0370 - Pyrococcus horikoshii ... 91 1e-17
>pir||G75189 hypothetical protein PAB2321 - Pyrococcus abyssi (strain Orsay)
>gi|5457475|emb|CAB48966.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 249
Score = 501 bits (1275), Expect = e-141
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE 60
MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE
Sbjct: 1 MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE 60
Query: 61 RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY 120
RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY
Sbjct: 61 RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY 120
Query: 121 KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL 180
KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL
Sbjct: 121 KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL 180
Query: 181 EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI 240
EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI
Sbjct: 181 EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI 240
Query: 241 VNIELEELE 249
VNIELEELE
Sbjct: 241 VNIELEELE 249
>gi|10803614 ORF H0745 [Halobacterium sp. NRC-1] >gi|10803689|ref|NP_046087.1|
ORF H1617 [Halobacterium sp. NRC-1]
>gi|7484052|pir||T08284 conserved hypothetical protein
H0745 - Halobacterium sp. (strain NRC-1) plasmid
pNRC100 >gi|2822345|gb|AAC82851.1| (AF016485) ORF H0745
[Halobacterium sp. NRC-1] >gi|2822420|gb|AAC82926.1|
(AF016485) ORF H1617 [Halobacterium sp. NRC-1]
>gi|10584150|gb|AAG20775.1| (AE005146) Vng6088c
[Halobacterium sp. NRC-1]
Length = 276
Score = 163 bits (408), Expect = 2e-39
Identities = 92/249 (36%), Positives = 143/249 (56%), Gaps = 11/249 (4%)
Query: 5 LLKKLARK--KIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEA-ER 61
LL LA + +I +I++V V ++ R + SRL ++G ++R+ G+Y++IPL A E
Sbjct: 21 LLSHLAAEGHQIISIDDVEATLEVAPNTAREIASRLTEKGWLDRLLPGRYLIIPLAAGEE 80
Query: 62 SEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKYK 121
+ YT HE++I S + +P I Y+SAL+++G TEQ+P TV++ T R + RE I GV Y+
Sbjct: 81 AVYTTHEYLIASHVAEPMYIGYYSALSHHGLTEQVPRTVYVVTPTRAQSRE--IHGVPYR 138
Query: 122 IVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAF--KNKNEFD 179
+ + KFFG + T IE V + D KT+VDC D P YCGGI E+A A +
Sbjct: 139 VATVTERKFFGYEPTSIEGTVVNVADLAKTLVDCADHPEYCGGIRELATAMVAADDQACS 198
Query: 180 LEKLRRYALRMGNSAVIRRLGYLCDYFDIPI----DLQKPKTRNYILLDPTMPRRGCVDG 235
+ Y R+ N A +R+ YL D I + L + T Y LLDPT +G D
Sbjct: 199 WATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRETLVESFTSGYSLLDPTQSEQGSYDS 258
Query: 236 KWKVIVNIE 244
++++ +N++
Sbjct: 259 EYRLRINVD 267
>pir||G71144 hypothetical protein PH0370 - Pyrococcus horikoshii
>gi|3256761|dbj|BAA29444.1| (AP000002) 266aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 266
Score = 90.9 bits (222), Expect = 1e-17
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 20/247 (8%)
Query: 13 KIFTIEEVAEI-SGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAERSEYTLHEFII 71
KI T+ EVAE+ + ++ + LS LEK+G + RI+ G Y++ + S + I
Sbjct: 22 KIITVREVAELFPELSRNMICKALSSLEKKGYLYRIKNGLYLIQQAPTKGSIIIEDPYRI 81
Query: 72 GSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKYKIVRIKPEKFF 131
+ IA+ SAL Y E P TVF+ T + KK E+ + ++ +
Sbjct: 82 ALAMFS-GYIAFSSALRLYNLIEYEPFTVFVATPRKSKKVEIDNYIIQAVAL-------- 132
Query: 132 GIKRTWIEEFQVPITDR-EKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDLEKLRRYALRM 190
G K T I + T KT DC KP+YCGG + KA D ++ Y R
Sbjct: 133 GEKATGITLYNGVYTSTLAKTFFDCFYKPQYCGGYETITKALYEAESIDWKEFLDYFKRF 192
Query: 191 GNSAVIRRLGYLCDY------FDIP---IDLQKPKTRNYILLDPTMPRRGCVDGKWKVIV 241
+ ++ +R GY+ + F IP ++ + K L PT P RG +WK++
Sbjct: 193 ASPSLFQRTGYILELMNKELNFKIPKEVLEFFRSKVETKTKLVPTSPSRGKFIKEWKLLD 252
Query: 242 NIELEEL 248
N+ +++
Sbjct: 253 NLGKDKI 259
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90628152
Number of Sequences: 2977
Number of extensions: 3743015
Number of successful extensions: 8210
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8202
Number of HSP's gapped (non-prelim): 3
length of query: 249
length of database: 189,106,746
effective HSP length: 54
effective length of query: 195
effective length of database: 156,788,448
effective search space: 30573747360
effective search space used: 30573747360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)