BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2321 (PAB2321) DE:Hypothetical protein
         (249 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75189 hypothetical protein PAB2321 - Pyrococcus abyssi (st...   501  e-141
gi|10803614 ORF H0745 [Halobacterium sp. NRC-1] >gi|10803689|ref...   163  2e-39
pir||G71144 hypothetical protein PH0370 - Pyrococcus horikoshii ...    91  1e-17

>pir||G75189 hypothetical protein PAB2321 - Pyrococcus abyssi (strain Orsay)
           >gi|5457475|emb|CAB48966.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 249
           
 Score =  501 bits (1275), Expect = e-141
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE 60
           MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE
Sbjct: 1   MRIELLKKLARKKIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAE 60

Query: 61  RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY 120
           RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY
Sbjct: 61  RSEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKY 120

Query: 121 KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL 180
           KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL
Sbjct: 121 KIVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDL 180

Query: 181 EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI 240
           EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI
Sbjct: 181 EKLRRYALRMGNSAVIRRLGYLCDYFDIPIDLQKPKTRNYILLDPTMPRRGCVDGKWKVI 240

Query: 241 VNIELEELE 249
           VNIELEELE
Sbjct: 241 VNIELEELE 249


>gi|10803614 ORF H0745 [Halobacterium sp. NRC-1] >gi|10803689|ref|NP_046087.1|
           ORF H1617 [Halobacterium sp. NRC-1]
           >gi|7484052|pir||T08284 conserved hypothetical protein
           H0745 - Halobacterium sp.  (strain NRC-1) plasmid
           pNRC100 >gi|2822345|gb|AAC82851.1| (AF016485) ORF H0745
           [Halobacterium sp. NRC-1] >gi|2822420|gb|AAC82926.1|
           (AF016485) ORF H1617 [Halobacterium sp. NRC-1]
           >gi|10584150|gb|AAG20775.1| (AE005146) Vng6088c
           [Halobacterium sp. NRC-1]
           Length = 276
           
 Score =  163 bits (408), Expect = 2e-39
 Identities = 92/249 (36%), Positives = 143/249 (56%), Gaps = 11/249 (4%)

Query: 5   LLKKLARK--KIFTIEEVAEISGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEA-ER 61
           LL  LA +  +I +I++V     V  ++ R + SRL ++G ++R+  G+Y++IPL A E 
Sbjct: 21  LLSHLAAEGHQIISIDDVEATLEVAPNTAREIASRLTEKGWLDRLLPGRYLIIPLAAGEE 80

Query: 62  SEYTLHEFIIGSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKYK 121
           + YT HE++I S + +P  I Y+SAL+++G TEQ+P TV++ T  R + RE  I GV Y+
Sbjct: 81  AVYTTHEYLIASHVAEPMYIGYYSALSHHGLTEQVPRTVYVVTPTRAQSRE--IHGVPYR 138

Query: 122 IVRIKPEKFFGIKRTWIEEFQVPITDREKTIVDCLDKPRYCGGIVEVAKAF--KNKNEFD 179
           +  +   KFFG + T IE   V + D  KT+VDC D P YCGGI E+A A    +     
Sbjct: 139 VATVTERKFFGYEPTSIEGTVVNVADLAKTLVDCADHPEYCGGIRELATAMVAADDQACS 198

Query: 180 LEKLRRYALRMGNSAVIRRLGYLCDYFDIPI----DLQKPKTRNYILLDPTMPRRGCVDG 235
              +  Y  R+ N A  +R+ YL D   I +     L +  T  Y LLDPT   +G  D 
Sbjct: 199 WATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRETLVESFTSGYSLLDPTQSEQGSYDS 258

Query: 236 KWKVIVNIE 244
           ++++ +N++
Sbjct: 259 EYRLRINVD 267


>pir||G71144 hypothetical protein PH0370 - Pyrococcus horikoshii
           >gi|3256761|dbj|BAA29444.1| (AP000002) 266aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 266
           
 Score = 90.9 bits (222), Expect = 1e-17
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 20/247 (8%)

Query: 13  KIFTIEEVAEI-SGVKKSSLRVLLSRLEKRGLIERIERGKYVVIPLEAERSEYTLHEFII 71
           KI T+ EVAE+   + ++ +   LS LEK+G + RI+ G Y++     + S      + I
Sbjct: 22  KIITVREVAELFPELSRNMICKALSSLEKKGYLYRIKNGLYLIQQAPTKGSIIIEDPYRI 81

Query: 72  GSQLVQPSAIAYWSALNYYGFTEQIPSTVFIQTTARKKKRELTIFGVKYKIVRIKPEKFF 131
              +     IA+ SAL  Y   E  P TVF+ T  + KK E+  + ++   +        
Sbjct: 82  ALAMFS-GYIAFSSALRLYNLIEYEPFTVFVATPRKSKKVEIDNYIIQAVAL-------- 132

Query: 132 GIKRTWIEEFQVPITDR-EKTIVDCLDKPRYCGGIVEVAKAFKNKNEFDLEKLRRYALRM 190
           G K T I  +    T    KT  DC  KP+YCGG   + KA       D ++   Y  R 
Sbjct: 133 GEKATGITLYNGVYTSTLAKTFFDCFYKPQYCGGYETITKALYEAESIDWKEFLDYFKRF 192

Query: 191 GNSAVIRRLGYLCDY------FDIP---IDLQKPKTRNYILLDPTMPRRGCVDGKWKVIV 241
            + ++ +R GY+ +       F IP   ++  + K      L PT P RG    +WK++ 
Sbjct: 193 ASPSLFQRTGYILELMNKELNFKIPKEVLEFFRSKVETKTKLVPTSPSRGKFIKEWKLLD 252

Query: 242 NIELEEL 248
           N+  +++
Sbjct: 253 NLGKDKI 259


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.142    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90628152
Number of Sequences: 2977
Number of extensions: 3743015
Number of successful extensions: 8210
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8202
Number of HSP's gapped (non-prelim): 3
length of query: 249
length of database: 189,106,746
effective HSP length: 54
effective length of query: 195
effective length of database: 156,788,448
effective search space: 30573747360
effective search space used: 30573747360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)