BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2323 (PAB2323) DE:Hypothetical protein
         (179 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75189 hypothetical protein PAB2323 - Pyrococcus abyssi (st...   356  9e-98
pir||A71145 hypothetical protein PH0372 - Pyrococcus horikoshii ...   280  5e-75
pir||D64439 hypothetical protein MJ1117 - Methanococcus jannasch...    72  5e-12

>pir||E75189 hypothetical protein PAB2323 - Pyrococcus abyssi (strain Orsay)
           >gi|5457473|emb|CAB48964.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 179
           
 Score =  356 bits (904), Expect = 9e-98
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MIIIMAGGRSSRMGKEKPVLKVGDKPMILRVYEEAEKVGETVVALSKNTPKTRELCLKEG 60
           MIIIMAGGRSSRMGKEKPVLKVGDKPMILRVYEEAEKVGETVVALSKNTPKTRELCLKEG
Sbjct: 1   MIIIMAGGRSSRMGKEKPVLKVGDKPMILRVYEEAEKVGETVVALSKNTPKTRELCLKEG 60

Query: 61  IPFIETPGEGYVKDTQWLLSELGPFISVSADLPFVKSSDIYSILRAFSGEESLTGVLPLK 120
           IPFIETPGEGYVKDTQWLLSELGPFISVSADLPFVKSSDIYSILRAFSGEESLTGVLPLK
Sbjct: 61  IPFIETPGEGYVKDTQWLLSELGPFISVSADLPFVKSSDIYSILRAFSGEESLTGVLPLK 120

Query: 121 LVPKDLHPVVYRGYAIVGLNGVGIEGEKFFEFRNPLLALNVNTPEELKLARRIAELVER 179
           LVPKDLHPVVYRGYAIVGLNGVGIEGEKFFEFRNPLLALNVNTPEELKLARRIAELVER
Sbjct: 121 LVPKDLHPVVYRGYAIVGLNGVGIEGEKFFEFRNPLLALNVNTPEELKLARRIAELVER 179


>pir||A71145 hypothetical protein PH0372 - Pyrococcus horikoshii
           >gi|3256763|dbj|BAA29446.1| (AP000002) 181aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 181
           
 Score =  280 bits (710), Expect = 5e-75
 Identities = 136/177 (76%), Positives = 154/177 (86%)

Query: 1   MIIIMAGGRSSRMGKEKPVLKVGDKPMILRVYEEAEKVGETVVALSKNTPKTRELCLKEG 60
           MI+IMAGGRSSRMG EKP+LKV  KPMILRVYEE+ KVGET+VA+SKNTPKTRELC+KEG
Sbjct: 4   MIVIMAGGRSSRMGAEKPILKVNGKPMILRVYEESTKVGETLVAISKNTPKTRELCIKEG 63

Query: 61  IPFIETPGEGYVKDTQWLLSELGPFISVSADLPFVKSSDIYSILRAFSGEESLTGVLPLK 120
           IP IETPGEGYV+D ++LL ELG F+SVSADLPFVK+ DI  + +AF G+ SLTGVLPL 
Sbjct: 64  IPLIETPGEGYVEDVRYLLKELGSFVSVSADLPFVKACDIAEVKKAFDGKTSLTGVLPLS 123

Query: 121 LVPKDLHPVVYRGYAIVGLNGVGIEGEKFFEFRNPLLALNVNTPEELKLARRIAELV 177
            VP DL PVVY+GY IVGLNGVG EGEKF+E  NPLLALNVNTPEELKLA RIA+L+
Sbjct: 124 KVPTDLRPVVYKGYVIVGLNGVGFEGEKFYELSNPLLALNVNTPEELKLANRIAKLI 180


>pir||D64439 hypothetical protein MJ1117 - Methanococcus jannaschii
           >gi|1591756|gb|AAB99118.1| (U67554) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 196
           
 Score = 71.8 bits (173), Expect = 5e-12
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 20/189 (10%)

Query: 3   IIMAGGRSSRMGK-EKPVLKVGDKPMILRVYEEA--EKVGETVVALSKNTPKTRELCLK- 58
           +IMAGG+ +RMG  EKP++K+  + +I  V       KV    +A S NTPKT+E     
Sbjct: 4   LIMAGGKGTRMGGVEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSA 63

Query: 59  ----EGIPFIETPGEGYVKDTQWLLSELG-PFISVSADLPFVKSSDIYSILRAFSGEESL 113
               + I  I+T G+GY++D    +     PF+ VS+DL  +KS  I SI+  F   ++ 
Sbjct: 64  YKDYKNIVVIDTSGKGYIEDLNECIGYFSEPFLVVSSDLINLKSKIINSIVDYFYCIKAK 123

Query: 114 TGVLP--LKLVPKDLHP---VVYRGYAIVGLNGV----GIEGEKFFEFRNPLLALNVNTP 164
           T  +     ++PK+ +P   + + G    G+N V    G + E+        L  N+NT 
Sbjct: 124 TPDVEALAVMIPKEKYPNPSIDFNGLVPAGINVVSPKHGYQKEEIMVIDE--LIFNINTK 181

Query: 165 EELKLARRI 173
           ++LKLA  +
Sbjct: 182 DDLKLAEML 190


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67139286
Number of Sequences: 2977
Number of extensions: 2788585
Number of successful extensions: 6220
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6214
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 189,106,746
effective HSP length: 54
effective length of query: 125
effective length of database: 156,788,448
effective search space: 19598556000
effective search space used: 19598556000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)